Wall clock time and date at job start Mon Mar 30 2020 01:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00121 * 2 1 4 4 H 1.48507 * 109.46710 * 269.99645 * 3 2 1 5 5 H 1.48496 * 109.47253 * 29.99195 * 3 2 1 6 6 H 1.48500 * 109.47201 * 149.99659 * 3 2 1 7 7 C 1.37880 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99826 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46695 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99664 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00222 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00216 * 179.97438 * 11 10 9 14 14 N 1.46899 * 109.47754 * 180.02562 * 13 11 10 15 15 C 1.46816 * 111.00218 * 175.00002 * 14 13 11 16 16 C 1.50706 * 110.03401 * 172.35340 * 15 14 13 17 17 C 1.38662 * 118.61358 * 162.64059 * 16 15 14 18 18 C 1.38050 * 120.31352 * 179.81438 * 17 16 15 19 19 C 1.38252 * 119.87414 * 359.97158 * 18 17 16 20 20 C 1.38050 * 119.86893 * 0.09222 * 19 18 17 21 21 C 1.37877 * 121.58020 * 342.59103 * 16 15 14 22 22 C 1.50710 * 121.54360 * 0.37789 * 21 16 15 23 23 O 1.42835 * 109.97820 * 344.21845 * 22 21 16 24 24 H 0.97004 * 119.99753 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47089 * 60.00101 * 9 7 2 26 26 H 1.09003 * 109.47034 * 299.99267 * 9 7 2 27 27 H 0.97004 * 120.00440 * 359.97438 * 10 9 7 28 28 H 1.09001 * 109.47256 * 59.99596 * 13 11 10 29 29 H 1.09006 * 109.47205 * 300.00429 * 13 11 10 30 30 H 1.08998 * 109.37293 * 292.52565 * 15 14 13 31 31 H 1.08995 * 109.37824 * 52.29077 * 15 14 13 32 32 H 1.07993 * 119.84414 * 359.81665 * 17 16 15 33 33 H 1.07998 * 120.05895 * 179.97438 * 18 17 16 34 34 H 1.08005 * 120.06682 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.84854 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.38355 * 104.37073 * 22 21 16 37 37 H 1.08997 * 109.39064 * 224.16288 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5613 -5.1049 0.0020 13 6 2.7329 -6.0289 0.0005 14 7 1.9984 -7.3011 0.0006 15 6 2.9178 -8.4394 -0.1194 16 6 2.1665 -9.7320 0.0702 17 6 2.7562 -10.9118 -0.3577 18 6 2.1010 -12.1163 -0.1978 19 6 0.8511 -12.1472 0.3922 20 6 0.2623 -10.9732 0.8174 21 6 0.9185 -9.7627 0.6555 22 6 0.2382 -8.5036 1.1280 23 8 1.1868 -7.4393 1.2145 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 3.1567 -3.4355 0.0002 28 1 3.3603 -5.9710 0.8899 29 1 3.3589 -5.9713 -0.8900 30 1 3.3778 -8.4301 -1.1075 31 1 3.6940 -8.3592 0.6415 32 1 3.7328 -10.8883 -0.8182 33 1 2.5639 -13.0326 -0.5330 34 1 0.3358 -13.0879 0.5192 35 1 -0.7139 -10.9979 1.2787 36 1 -0.5481 -8.2312 0.4240 37 1 -0.2002 -8.6762 2.1109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879515955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:51 Heat of formation + Delta-G solvation = -2.857383 kcal Electronic energy + Delta-G solvation = -20495.280123 eV Core-core repulsion = 17239.423443 eV Total energy + Delta-G solvation = -3255.856679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.05513 -38.67896 -36.95599 -34.26983 -34.01193 -32.29239 -31.96826 -31.33968 -28.35158 -26.66833 -25.57836 -24.08234 -22.53289 -22.13593 -20.20419 -19.63183 -17.73786 -16.84368 -16.50597 -15.91702 -15.75316 -15.24697 -15.08982 -14.90112 -14.44677 -14.28437 -13.82572 -13.75567 -13.37612 -13.35207 -12.70176 -12.54736 -12.35454 -12.03748 -11.90812 -11.51391 -11.41040 -11.17864 -10.95251 -10.84494 -10.28767 -10.14580 -9.35911 -9.14881 -8.92959 -8.75690 -8.69532 -8.49384 -7.79631 -6.13536 -4.20230 1.12555 1.15130 2.60150 3.25873 3.31831 3.34305 3.48824 3.51475 3.91549 4.33928 4.46141 4.56697 4.71402 4.74800 4.93091 5.12709 5.15090 5.22359 5.24757 5.33646 5.37605 5.45932 5.58203 5.60912 5.69650 5.79315 5.84154 6.22843 6.24977 6.29873 6.51106 6.77015 7.00754 7.37132 7.51506 7.58001 7.71733 8.01200 8.69260 8.83896 9.20415 9.46639 10.96727 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.055858 B = 0.003006 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.152679 B = 9311.628687 C = 9689.297086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.253 3.747 10 N -0.718 5.718 11 C 0.503 3.497 12 O -0.526 6.526 13 C 0.025 3.975 14 N -0.332 5.332 15 C 0.059 3.941 16 C -0.074 4.074 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.098 4.098 22 C 0.105 3.895 23 O -0.229 6.229 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.388 0.612 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.969 -22.644 0.295 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.132 3.868 10 N -0.368 5.368 11 C 0.286 3.714 12 O -0.402 6.402 13 C -0.107 4.107 14 N -0.099 5.099 15 C -0.069 4.069 16 C -0.074 4.074 17 C -0.132 4.132 18 C -0.141 4.141 19 C -0.138 4.138 20 C -0.133 4.133 21 C -0.099 4.099 22 C 0.027 3.973 23 O -0.234 6.234 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.221 0.779 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.095 0.905 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.593 -22.506 0.083 23.191 hybrid contribution 1.494 0.776 0.511 1.759 sum 7.087 -21.730 0.594 22.864 Atomic orbital electron populations 1.69981 1.06103 1.27243 1.48970 1.24958 0.94910 0.99430 0.94779 0.86420 0.79606 0.82710 0.78187 1.20477 1.21030 1.19785 1.21236 0.93241 0.90504 1.53080 0.91937 1.19063 0.88259 0.81799 0.97685 1.46407 1.10967 1.05940 1.73468 1.19947 0.89391 0.83763 0.78319 1.90671 1.16320 1.84422 1.48790 1.22317 0.95810 0.88926 1.03609 1.68358 1.21129 1.01031 1.19420 1.21604 0.94013 0.88577 1.02737 1.19370 0.94717 0.94362 0.98997 1.20984 1.00025 0.91853 1.00388 1.21050 0.95486 0.97658 0.99893 1.21087 0.95722 0.98046 0.98980 1.21017 1.00007 0.91747 1.00528 1.20264 0.94796 0.96137 0.98723 1.21429 0.91169 0.82888 1.01820 1.90993 1.49724 1.52567 1.30121 0.92476 0.95587 0.95622 0.77939 0.90891 0.86265 0.87542 0.92115 0.85879 0.85983 0.85978 0.85735 0.90454 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.80 5.43 -5.19 -0.03 6.77 16 10 N -0.72 -15.27 5.55 -61.47 -0.34 -15.61 16 11 C 0.50 10.36 7.72 -10.99 -0.08 10.27 16 12 O -0.53 -13.23 15.62 -11.33 -0.18 -13.41 16 13 C 0.02 0.37 5.74 -4.98 -0.03 0.34 16 14 N -0.33 -5.15 4.90 -116.40 -0.57 -5.72 16 15 C 0.06 0.68 5.66 -5.02 -0.03 0.65 16 16 C -0.07 -0.88 5.83 -104.59 -0.61 -1.49 16 17 C -0.11 -1.10 9.66 -39.49 -0.38 -1.48 16 18 C -0.12 -1.08 10.05 -39.65 -0.40 -1.47 16 19 C -0.12 -1.08 10.05 -39.65 -0.40 -1.48 16 20 C -0.11 -1.18 9.67 -39.50 -0.38 -1.56 16 21 C -0.10 -1.22 5.84 -104.60 -0.61 -1.83 16 22 C 0.10 1.46 6.99 36.01 0.25 1.72 16 23 O -0.23 -3.98 10.04 -31.02 -0.31 -4.29 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.39 6.92 8.32 -40.82 -0.34 6.59 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.12 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -34.88 319.14 -8.93 -43.81 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.94 Total: 3.16 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -3.12 Total: -3.05 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.18 Total: -46.98 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.49 Total: -17.70 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.88 -8.93 -43.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879515955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.954 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds