Wall clock time and date at job start Mon Mar 30 2020 01:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00121 * 2 1 4 4 H 1.48507 * 109.46710 * 269.99645 * 3 2 1 5 5 H 1.48496 * 109.47253 * 29.99195 * 3 2 1 6 6 H 1.48500 * 109.47201 * 149.99659 * 3 2 1 7 7 C 1.37880 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99826 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46695 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99664 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00222 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00216 * 179.97438 * 11 10 9 14 14 N 1.46899 * 109.47754 * 180.02562 * 13 11 10 15 15 C 1.46816 * 111.00218 * 175.00002 * 14 13 11 16 16 C 1.50706 * 110.03401 * 172.35340 * 15 14 13 17 17 C 1.38662 * 118.61358 * 162.64059 * 16 15 14 18 18 C 1.38050 * 120.31352 * 179.81438 * 17 16 15 19 19 C 1.38252 * 119.87414 * 359.97158 * 18 17 16 20 20 C 1.38050 * 119.86893 * 0.09222 * 19 18 17 21 21 C 1.37877 * 121.58020 * 342.59103 * 16 15 14 22 22 C 1.50710 * 121.54360 * 0.37789 * 21 16 15 23 23 O 1.42835 * 109.97820 * 344.21845 * 22 21 16 24 24 H 0.97004 * 119.99753 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47089 * 60.00101 * 9 7 2 26 26 H 1.09003 * 109.47034 * 299.99267 * 9 7 2 27 27 H 0.97004 * 120.00440 * 359.97438 * 10 9 7 28 28 H 1.09001 * 109.47256 * 59.99596 * 13 11 10 29 29 H 1.09006 * 109.47205 * 300.00429 * 13 11 10 30 30 H 1.08998 * 109.37293 * 292.52565 * 15 14 13 31 31 H 1.08995 * 109.37824 * 52.29077 * 15 14 13 32 32 H 1.07993 * 119.84414 * 359.81665 * 17 16 15 33 33 H 1.07998 * 120.05895 * 179.97438 * 18 17 16 34 34 H 1.08005 * 120.06682 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.84854 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.38355 * 104.37073 * 22 21 16 37 37 H 1.08997 * 109.39064 * 224.16288 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5613 -5.1049 0.0020 13 6 2.7329 -6.0289 0.0005 14 7 1.9984 -7.3011 0.0006 15 6 2.9178 -8.4394 -0.1194 16 6 2.1665 -9.7320 0.0702 17 6 2.7562 -10.9118 -0.3577 18 6 2.1010 -12.1163 -0.1978 19 6 0.8511 -12.1472 0.3922 20 6 0.2623 -10.9732 0.8174 21 6 0.9185 -9.7627 0.6555 22 6 0.2382 -8.5036 1.1280 23 8 1.1868 -7.4393 1.2145 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 3.1567 -3.4355 0.0002 28 1 3.3603 -5.9710 0.8899 29 1 3.3589 -5.9713 -0.8900 30 1 3.3778 -8.4301 -1.1075 31 1 3.6940 -8.3592 0.6415 32 1 3.7328 -10.8883 -0.8182 33 1 2.5639 -13.0326 -0.5330 34 1 0.3358 -13.0879 0.5192 35 1 -0.7139 -10.9979 1.2787 36 1 -0.5481 -8.2312 0.4240 37 1 -0.2002 -8.6762 2.1109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879515955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:51 Heat of formation + Delta-G solvation = -27.581069 kcal Electronic energy + Delta-G solvation = -20496.352222 eV Core-core repulsion = 17239.423443 eV Total energy + Delta-G solvation = -3256.928779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.95068 -40.27511 -38.02628 -36.07912 -35.27661 -34.30677 -32.86475 -32.21586 -29.94465 -28.20486 -26.53937 -25.38733 -24.08975 -23.16074 -21.38121 -21.02658 -19.16302 -18.31451 -17.58260 -17.41388 -16.98309 -16.59732 -16.49877 -16.04467 -15.75809 -15.68492 -15.09497 -14.79570 -14.58277 -14.26540 -14.11294 -14.06485 -13.85982 -13.39415 -13.09767 -12.89953 -12.79036 -12.65998 -12.39762 -12.21434 -11.92453 -11.47403 -11.16926 -10.78960 -10.70195 -9.93804 -9.77211 -9.57653 -9.48719 -8.27999 -6.44778 0.36593 0.42306 1.43448 1.46467 1.50178 1.57667 1.85859 2.30982 2.52057 2.78315 3.06789 3.50005 3.70130 3.79949 3.97804 4.01109 4.25105 4.26219 4.36129 4.38850 4.40492 4.50077 4.58225 4.67518 4.78064 5.00834 5.07970 5.12861 5.26175 5.37856 5.49938 5.51167 5.54719 5.59367 5.74623 5.86555 5.97096 6.07141 6.66877 6.97879 7.25035 7.57935 8.84463 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.055858 B = 0.003006 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.152679 B = 9311.628687 C = 9689.297086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.270 3.730 10 N -0.710 5.710 11 C 0.496 3.504 12 O -0.580 6.580 13 C 0.038 3.962 14 N -0.353 5.353 15 C 0.060 3.940 16 C -0.096 4.096 17 C -0.115 4.115 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.125 4.125 22 C 0.104 3.896 23 O -0.267 6.267 24 H 0.268 0.732 25 H -0.014 1.014 26 H -0.018 1.018 27 H 0.409 0.591 28 H 0.098 0.902 29 H 0.165 0.835 30 H 0.135 0.865 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.135 0.865 36 H 0.052 0.948 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 -23.962 -0.271 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.104 0.896 9 C 0.147 3.853 10 N -0.362 5.362 11 C 0.282 3.718 12 O -0.459 6.459 13 C -0.092 4.092 14 N -0.122 5.122 15 C -0.067 4.067 16 C -0.097 4.097 17 C -0.133 4.133 18 C -0.140 4.140 19 C -0.141 4.141 20 C -0.143 4.143 21 C -0.126 4.126 22 C 0.026 3.974 23 O -0.271 6.271 24 H 0.077 0.923 25 H 0.004 0.996 26 H 0.000 1.000 27 H 0.245 0.755 28 H 0.116 0.884 29 H 0.182 0.818 30 H 0.153 0.847 31 H 0.093 0.907 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.153 0.847 36 H 0.070 0.930 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.996 -23.864 -0.473 25.508 hybrid contribution 0.403 1.061 0.671 1.319 sum 9.400 -22.802 0.198 24.665 Atomic orbital electron populations 1.70156 1.08379 1.28534 1.50102 1.26112 0.95779 1.04042 0.93900 0.85131 0.78462 0.76818 0.78635 1.19486 1.21095 1.17804 1.21637 0.94376 0.90491 1.52706 0.89592 1.18479 0.88695 0.84387 0.93783 1.46121 1.11146 1.05260 1.73649 1.21083 0.89873 0.84650 0.76154 1.90649 1.19241 1.85228 1.50789 1.22316 0.94019 0.86071 1.06829 1.68291 1.22635 1.02438 1.18854 1.21760 0.93420 0.86868 1.04651 1.19609 0.94836 0.95454 0.99772 1.21290 1.01051 0.91191 0.99808 1.21482 0.95209 0.98592 0.98677 1.21450 0.96062 0.98437 0.98112 1.21229 1.00603 0.91673 1.00771 1.20241 0.95907 0.95825 1.00635 1.21431 0.90478 0.83490 1.01952 1.90918 1.50678 1.53938 1.31568 0.92296 0.99643 1.00012 0.75512 0.88386 0.81789 0.84740 0.90724 0.83208 0.83045 0.83455 0.84683 0.92986 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 2 C 0.00 0.05 5.46 84.66 0.46 0.52 16 3 Si 0.99 42.67 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.55 -30.52 9.28 25.60 0.24 -30.29 16 8 H 0.09 4.23 7.60 -2.91 -0.02 4.20 16 9 C 0.27 15.20 5.43 85.63 0.46 15.67 16 10 N -0.71 -30.53 5.55 -466.79 -2.59 -33.12 16 11 C 0.50 20.77 7.72 87.66 0.68 21.45 16 12 O -0.58 -30.81 15.62 13.12 0.20 -30.60 16 13 C 0.04 1.06 5.74 85.56 0.49 1.55 16 14 N -0.35 -10.72 4.90 -522.18 -2.56 -13.28 16 15 C 0.06 1.25 5.66 85.57 0.48 1.73 16 16 C -0.10 -2.14 5.83 -19.85 -0.12 -2.26 16 17 C -0.12 -1.87 9.66 22.33 0.22 -1.65 16 18 C -0.12 -1.74 10.05 22.23 0.22 -1.51 16 19 C -0.12 -1.91 10.05 22.23 0.22 -1.69 16 20 C -0.12 -2.48 9.67 22.32 0.22 -2.26 16 21 C -0.13 -3.13 5.84 -19.85 -0.12 -3.24 16 22 C 0.10 3.10 6.99 71.24 0.50 3.60 16 23 O -0.27 -9.63 10.04 -34.99 -0.35 -9.98 16 24 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 25 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 26 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 27 H 0.41 14.02 8.32 -92.70 -0.77 13.24 16 28 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.16 3.03 8.13 -2.38 -0.02 3.01 16 30 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 32 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 35 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -81.13 319.14 1.28 -79.85 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.31 Total: 17.92 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 3.96 Total: 1.61 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -4.86 Total: -103.49 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.15 Total: -40.58 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -81.13 1.28 -79.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879515955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.267 kcal (2) G-P(sol) polarization free energy of solvation -81.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds