Wall clock time and date at job start Mon Mar 30 2020 02:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48496 * 109.47371 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46601 * 120.00499 * 3 2 1 6 6 H 1.48497 * 109.47074 * 239.99732 * 3 2 1 7 7 C 1.40025 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00235 * 4.82881 * 7 2 1 9 9 C 1.41338 * 119.99590 * 184.81835 * 7 2 1 10 10 C 1.40616 * 119.78842 * 185.12799 * 9 7 2 11 11 C 1.38298 * 119.13127 * 179.97438 * 10 9 7 12 12 C 1.38699 * 118.66812 * 359.97438 * 11 10 9 13 13 C 1.39627 * 119.49484 * 0.02562 * 12 11 10 14 14 N 1.39272 * 119.57217 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00016 * 339.09682 * 14 13 12 16 16 O 1.21274 * 120.00337 * 3.71162 * 15 14 13 17 17 C 1.50707 * 119.99962 * 183.71330 * 15 14 13 18 18 C 1.53004 * 109.47129 * 179.97438 * 17 15 14 19 19 H 1.09006 * 110.32993 * 307.25203 * 18 17 15 20 20 C 1.54473 * 110.37143 * 185.00484 * 18 17 15 21 21 C 1.54513 * 104.05904 * 217.19083 * 20 18 17 22 22 C 1.54476 * 104.06413 * 359.97438 * 21 20 18 23 23 O 1.44420 * 104.80256 * 23.97807 * 22 21 20 24 24 N 1.31923 * 120.85450 * 359.73087 * 13 12 11 25 25 H 0.97001 * 120.00048 * 174.98528 * 1 2 3 26 26 H 1.08005 * 120.42929 * 0.02562 * 10 9 7 27 27 H 1.07999 * 120.66743 * 179.97438 * 11 10 9 28 28 H 1.08001 * 120.24968 * 179.97438 * 12 11 10 29 29 H 0.97004 * 120.00297 * 159.09214 * 14 13 12 30 30 H 1.08996 * 109.47169 * 300.00011 * 17 15 14 31 31 H 1.09007 * 109.46923 * 60.00129 * 17 15 14 32 32 H 1.09003 * 110.51334 * 335.82989 * 20 18 17 33 33 H 1.08997 * 110.51568 * 98.40955 * 20 18 17 34 34 H 1.09001 * 110.51238 * 118.64593 * 21 20 18 35 35 H 1.09002 * 110.50874 * 241.34836 * 21 20 18 36 36 H 1.08995 * 110.37585 * 142.81381 * 22 21 20 37 37 H 1.09006 * 110.36935 * 265.03596 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0952 1.6964 -1.2124 7 6 2.0075 -1.2127 -0.0005 8 1 1.4704 -2.1462 -0.0797 9 6 3.4172 -1.2149 0.1023 10 6 4.1237 -2.4257 -0.0072 11 6 5.5028 -2.4121 0.0950 12 6 6.1427 -1.1990 0.3021 13 6 5.3851 -0.0305 0.4023 14 7 6.0260 1.1884 0.6108 15 6 7.2710 1.2156 1.1262 16 8 7.8594 0.1781 1.3455 17 6 7.9321 2.5354 1.4299 18 6 9.3289 2.2864 2.0024 19 1 9.2755 1.5972 2.8453 20 6 9.9771 3.6192 2.4379 21 6 11.4677 3.4502 2.0680 22 6 11.5439 2.0350 1.4534 23 8 10.2061 1.7657 0.9804 24 7 4.0706 -0.0653 0.2971 25 1 -0.4850 -0.8368 -0.0734 26 1 3.5962 -3.3541 -0.1697 27 1 6.0702 -3.3275 0.0150 28 1 7.2187 -1.1589 0.3861 29 1 5.5763 2.0177 0.3851 30 1 8.0134 3.1204 0.5139 31 1 7.3334 3.0825 2.1584 32 1 9.5398 4.4537 1.8896 33 1 9.8623 3.7669 3.5117 34 1 11.7674 4.2011 1.3369 35 1 12.0919 3.5133 2.9593 36 1 12.2501 2.0192 0.6234 37 1 11.8340 1.3073 2.2113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882476163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:29 Heat of formation + Delta-G solvation = -78.561180 kcal Electronic energy + Delta-G solvation = -20990.310666 eV Core-core repulsion = 17731.171223 eV Total energy + Delta-G solvation = -3259.139442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73978 -40.41229 -39.54085 -36.24935 -35.36502 -33.44790 -32.99850 -32.66030 -31.21280 -27.89118 -27.08636 -24.29742 -23.61311 -22.83670 -21.81366 -21.36040 -20.30318 -18.94151 -18.08740 -17.31009 -17.02020 -16.82297 -16.56246 -16.30610 -15.87087 -15.47231 -15.24134 -14.72602 -14.63718 -14.45666 -14.23234 -13.74336 -13.32583 -13.13767 -12.89845 -12.70062 -12.56351 -12.25947 -12.12169 -12.02781 -11.70998 -11.64804 -11.43046 -11.12336 -10.67158 -10.62182 -10.39827 -9.70644 -9.36465 -9.17799 -6.83661 0.52094 0.72066 1.55862 1.59325 1.76339 1.87043 2.09851 2.47498 2.66391 2.98740 3.51814 3.60576 3.65539 3.89145 4.08430 4.08714 4.19321 4.28880 4.41065 4.52520 4.61739 4.63310 4.67442 4.72157 4.84595 4.89453 4.95220 5.02002 5.18088 5.25835 5.34366 5.38392 5.43138 5.72785 5.80826 5.92980 5.99415 6.31948 6.41154 6.64731 7.11366 7.48722 7.93833 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.004449 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.267779 B = 6291.731086 C = 7109.699526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.013 3.987 3 Si 1.187 2.813 4 H -0.328 1.328 5 H -0.273 1.273 6 H -0.292 1.292 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.257 3.743 10 C -0.294 4.294 11 C -0.029 4.029 12 C -0.314 4.314 13 C 0.375 3.625 14 N -0.655 5.655 15 C 0.512 3.488 16 O -0.539 6.539 17 C -0.125 4.125 18 C 0.083 3.917 19 H 0.060 0.940 20 C -0.144 4.144 21 C -0.149 4.149 22 C 0.033 3.967 23 O -0.395 6.395 24 N -0.610 5.610 25 H 0.280 0.720 26 H 0.114 0.886 27 H 0.141 0.859 28 H 0.152 0.848 29 H 0.419 0.581 30 H 0.129 0.871 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.952 11.165 4.370 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.203 4.203 3 Si 1.019 2.981 4 H -0.261 1.261 5 H -0.200 1.200 6 H -0.220 1.220 7 C -0.541 4.541 8 H 0.085 0.915 9 C 0.132 3.868 10 C -0.316 4.316 11 C -0.053 4.053 12 C -0.338 4.338 13 C 0.144 3.856 14 N -0.301 5.301 15 C 0.302 3.698 16 O -0.415 6.415 17 C -0.164 4.164 18 C 0.025 3.975 19 H 0.078 0.922 20 C -0.182 4.182 21 C -0.187 4.187 22 C -0.044 4.044 23 O -0.315 6.315 24 N -0.337 5.337 25 H 0.091 0.909 26 H 0.132 0.868 27 H 0.159 0.841 28 H 0.169 0.831 29 H 0.256 0.744 30 H 0.147 0.853 31 H 0.164 0.836 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 19.582 12.609 4.482 23.718 hybrid contribution -0.289 -2.931 -0.218 2.954 sum 19.293 9.678 4.264 22.002 Atomic orbital electron populations 1.70673 1.08461 1.32670 1.33374 1.28657 0.95601 1.08127 0.87949 0.81463 0.70100 0.67562 0.79011 1.26105 1.19999 1.22049 1.20723 0.91225 0.96070 1.46126 0.91454 1.18464 0.93435 0.87319 0.87574 1.21767 0.94967 0.98125 1.16738 1.21353 0.93602 0.97921 0.92472 1.22111 1.01932 0.91900 1.17875 1.18526 0.88077 0.86560 0.92427 1.43464 1.16696 1.07492 1.62463 1.21630 0.79528 0.93450 0.75233 1.90569 1.63387 1.35820 1.51724 1.21945 0.95309 0.92772 1.06403 1.22825 0.89107 0.95293 0.90278 0.92242 1.23008 0.95236 0.96527 1.03410 1.22933 0.96802 0.96716 1.02213 1.23576 0.84724 0.96411 0.99679 1.89200 1.16978 1.81937 1.43382 1.66008 1.07904 1.29484 1.30259 0.90908 0.86791 0.84091 0.83091 0.74364 0.85308 0.83632 0.88686 0.88700 0.89637 0.89059 0.88510 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.44 13.65 21.84 0.30 -46.14 16 2 C 0.01 0.72 5.52 85.29 0.47 1.19 16 3 Si 1.19 56.13 25.61 68.60 1.76 57.89 16 4 H -0.33 -15.05 7.11 99.48 0.71 -14.34 16 5 H -0.27 -12.42 6.61 99.48 0.66 -11.76 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.51 -28.88 9.57 23.47 0.22 -28.66 16 8 H 0.07 3.88 8.05 -2.91 -0.02 3.86 16 9 C 0.26 13.86 6.40 40.21 0.26 14.11 16 10 C -0.29 -14.26 9.83 22.86 0.22 -14.04 16 11 C -0.03 -1.28 10.15 22.39 0.23 -1.05 16 12 C -0.31 -14.19 8.90 22.72 0.20 -13.99 16 13 C 0.38 17.13 7.51 133.23 1.00 18.13 16 14 N -0.65 -23.24 5.41 -308.39 -1.67 -24.91 16 15 C 0.51 16.19 7.65 87.66 0.67 16.86 16 16 O -0.54 -21.13 12.27 3.31 0.04 -21.09 16 17 C -0.13 -2.38 5.33 29.85 0.16 -2.22 16 18 C 0.08 1.67 2.74 31.10 0.09 1.76 16 19 H 0.06 1.40 7.91 -2.38 -0.02 1.38 16 20 C -0.14 -1.69 6.63 31.61 0.21 -1.48 16 21 C -0.15 -1.68 7.09 31.61 0.22 -1.46 16 22 C 0.03 0.57 7.63 72.48 0.55 1.12 16 23 O -0.40 -10.12 10.92 -142.66 -1.56 -11.68 16 24 N -0.61 -30.99 4.54 -186.36 -0.85 -31.84 16 25 H 0.28 15.24 8.72 -92.71 -0.81 14.43 16 26 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 27 H 0.14 5.07 8.06 -2.91 -0.02 5.05 16 28 H 0.15 6.77 5.17 -9.80 -0.05 6.72 16 29 H 0.42 12.45 8.82 -92.71 -0.82 11.64 16 30 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.15 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.09 0.83 7.87 -2.39 -0.02 0.81 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -71.75 307.82 2.68 -69.07 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.15 Total: 18.43 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 4.51 Total: -9.73 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -2.22 Total: -102.89 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.52 Total: -32.76 kcal Atomic # 14 Polarization: 56.13 SS G_CDS: 1.76 Total: 57.89 kcal Total: -71.75 2.68 -69.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.495 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds