Wall clock time and date at job start Mon Mar 30 2020 02:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86799 * 120.00092 * 2 1 4 4 H 1.48502 * 109.47068 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46942 * 300.00127 * 3 2 1 6 6 H 1.48494 * 109.47093 * 60.00126 * 3 2 1 7 7 C 1.40035 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.41339 * 119.99701 * 359.97438 * 7 2 1 10 10 C 1.40623 * 119.78426 * 180.23063 * 9 7 2 11 11 C 1.38300 * 119.12755 * 180.29350 * 10 9 7 12 12 C 1.38695 * 118.66871 * 359.48758 * 11 10 9 13 13 C 1.39632 * 119.49704 * 0.24835 * 12 11 10 14 14 N 1.39271 * 119.57509 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00325 * 174.73772 * 14 13 12 16 16 O 1.21275 * 119.99455 * 5.15867 * 15 14 13 17 17 C 1.50699 * 120.00365 * 185.16661 * 15 14 13 18 18 O 1.42903 * 110.01513 * 33.60680 * 17 15 14 19 19 C 1.54262 * 110.03179 * 272.16502 * 17 15 14 20 20 C 1.54892 * 104.19654 * 217.10523 * 19 17 15 21 21 C 1.54892 * 102.74769 * 37.93969 * 20 19 17 22 22 C 1.53874 * 110.03292 * 154.99652 * 17 15 14 23 23 N 1.31929 * 120.85220 * 0.02562 * 13 12 11 24 24 H 0.97003 * 120.00088 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.43291 * 0.05082 * 10 9 7 26 26 H 1.08001 * 120.66625 * 179.76108 * 11 10 9 27 27 H 1.08001 * 120.25253 * 180.23387 * 12 11 10 28 28 H 0.96999 * 120.00295 * 354.73040 * 14 13 12 29 29 H 0.96698 * 113.99679 * 300.69758 * 18 17 15 30 30 H 1.09005 * 110.48247 * 335.77881 * 19 17 15 31 31 H 1.08995 * 110.48756 * 98.42558 * 19 17 15 32 32 H 1.08995 * 110.75305 * 279.63098 * 20 19 17 33 33 H 1.08994 * 110.91737 * 156.32569 * 20 19 17 34 34 H 1.08995 * 110.48625 * 203.37984 * 21 20 19 35 35 H 1.09002 * 110.48925 * 80.73723 * 21 20 19 36 36 H 1.09004 * 110.03170 * 238.56965 * 22 17 15 37 37 H 1.09001 * 110.03329 * 359.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0084 -3.6519 0.0038 11 6 1.3032 -4.8416 -0.0024 12 6 -0.0829 -4.7934 -0.0019 13 6 -0.7278 -3.5550 -0.0005 14 7 -2.1196 -3.5047 0.0006 15 6 -2.7511 -2.3190 0.1090 16 8 -2.1108 -1.2890 0.1115 17 6 -4.2528 -2.2730 0.2274 18 8 -4.7213 -3.4116 0.9527 19 6 -4.8926 -2.2389 -1.1758 20 6 -6.1108 -1.2959 -1.0151 21 6 -5.5740 -0.2047 -0.0557 22 6 -4.6860 -0.9796 0.9396 23 7 -0.0358 -2.4318 0.0000 24 1 -0.4850 0.8401 0.0004 25 1 3.0884 -3.6561 0.0080 26 1 1.8214 -5.7892 -0.0031 27 1 -0.6591 -5.7069 -0.0029 28 1 -2.6346 -4.3231 -0.0769 29 1 -4.4890 -4.2586 0.5480 30 1 -4.1909 -1.8346 -1.9054 31 1 -5.2186 -3.2363 -1.4707 32 1 -6.9520 -1.8245 -0.5667 33 1 -6.3958 -0.8615 -1.9732 34 1 -6.3973 0.2824 0.4667 35 1 -4.9823 0.5281 -0.6043 36 1 -5.2544 -1.2204 1.8380 37 1 -3.8101 -0.3853 1.2000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882476369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:15 Heat of formation + Delta-G solvation = -56.930832 kcal Electronic energy + Delta-G solvation = -21890.027668 eV Core-core repulsion = 18631.826188 eV Total energy + Delta-G solvation = -3258.201480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56689 -39.96822 -38.26003 -36.41066 -35.66927 -34.76094 -32.25591 -31.08372 -29.77003 -29.07083 -27.46401 -24.46992 -23.28502 -22.22089 -21.80690 -20.47713 -19.87037 -18.77905 -18.05202 -17.02468 -16.65052 -16.32046 -16.22303 -15.90982 -15.64435 -15.36067 -14.73489 -14.53893 -14.07364 -13.98777 -13.81225 -13.41194 -12.94512 -12.77643 -12.73955 -12.57420 -12.40031 -12.33680 -12.06017 -12.01767 -11.76583 -11.63287 -11.47354 -11.39866 -10.89613 -10.39388 -9.92627 -9.09301 -8.86089 -8.07940 -6.44396 0.87414 1.22053 1.37967 1.49028 1.52693 1.99344 2.18118 2.24450 2.95557 3.22876 3.45579 3.56839 3.75737 4.03435 4.23124 4.35004 4.43997 4.45161 4.56715 4.72149 4.72852 4.82697 4.87751 4.93831 5.00872 5.03556 5.07640 5.16000 5.25971 5.28718 5.43523 5.65567 5.81035 5.90437 6.11617 6.33809 6.53796 6.75187 6.83240 7.05370 7.58935 8.31451 8.54192 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.006999 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.575238 B = 3999.607364 C = 5442.946681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.011 3.989 3 Si 0.975 3.025 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.465 4.465 8 H 0.086 0.914 9 C 0.236 3.764 10 C -0.329 4.329 11 C -0.034 4.034 12 C -0.346 4.346 13 C 0.347 3.653 14 N -0.652 5.652 15 C 0.442 3.558 16 O -0.450 6.450 17 C 0.130 3.870 18 O -0.549 6.549 19 C -0.139 4.139 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.110 4.110 23 N -0.509 5.509 24 H 0.270 0.730 25 H 0.104 0.896 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.417 0.583 29 H 0.389 0.611 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 -4.154 -1.801 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.214 4.214 3 Si 0.796 3.204 4 H -0.177 1.177 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.496 4.496 8 H 0.104 0.896 9 C 0.110 3.890 10 C -0.352 4.352 11 C -0.059 4.059 12 C -0.371 4.371 13 C 0.108 3.892 14 N -0.302 5.302 15 C 0.225 3.775 16 O -0.316 6.316 17 C 0.086 3.914 18 O -0.357 6.357 19 C -0.177 4.177 20 C -0.147 4.147 21 C -0.156 4.156 22 C -0.148 4.148 23 N -0.229 5.229 24 H 0.081 0.919 25 H 0.123 0.877 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.255 0.745 29 H 0.239 0.761 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.974 -1.945 -1.381 13.192 hybrid contribution 1.270 -0.980 -0.295 1.631 sum -11.704 -2.925 -1.676 12.180 Atomic orbital electron populations 1.70522 1.07315 1.27929 1.25343 1.27043 0.96025 1.04035 0.94337 0.85274 0.79641 0.77099 0.78416 1.17682 1.19457 1.19639 1.19936 0.94459 0.90456 1.44764 0.89613 1.18899 0.87952 0.93460 0.88684 1.21822 0.99242 0.93855 1.20247 1.21047 0.93580 0.97347 0.93880 1.20998 0.95242 0.95740 1.25096 1.19170 0.85162 0.91167 0.93695 1.43368 1.03695 1.10375 1.72754 1.22399 0.91956 0.84576 0.78525 1.91139 1.66301 1.32479 1.41638 1.22105 0.86295 0.88865 0.94133 1.86615 1.79452 1.16151 1.53520 1.22990 0.98156 1.02999 0.93536 1.22447 0.96627 0.95548 1.00061 1.22347 0.98679 0.97813 0.96780 1.22100 1.00382 0.92695 0.99633 1.68641 1.07396 1.25487 1.21368 0.91927 0.87738 0.84433 0.84839 0.74511 0.76064 0.92442 0.87750 0.89355 0.89774 0.89184 0.92523 0.89753 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.31 8.99 21.84 0.20 -40.11 16 2 C 0.01 0.60 5.50 85.29 0.47 1.07 16 3 Si 0.97 41.21 29.56 68.60 2.03 43.24 16 4 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.47 -26.87 9.14 23.47 0.21 -26.65 16 8 H 0.09 4.65 7.85 -2.91 -0.02 4.62 16 9 C 0.24 13.81 6.55 40.21 0.26 14.07 16 10 C -0.33 -16.80 9.83 22.87 0.22 -16.58 16 11 C -0.03 -1.50 10.15 22.39 0.23 -1.28 16 12 C -0.35 -14.78 9.95 22.72 0.23 -14.56 16 13 C 0.35 16.95 7.43 133.23 0.99 17.94 16 14 N -0.65 -25.15 5.27 -308.38 -1.62 -26.77 16 15 C 0.44 18.15 6.58 87.66 0.58 18.72 16 16 O -0.45 -23.52 11.34 -3.02 -0.03 -23.56 16 17 C 0.13 3.86 1.28 -10.82 -0.01 3.85 16 18 O -0.55 -13.62 12.80 -148.98 -1.91 -15.53 16 19 C -0.14 -3.28 6.08 31.67 0.19 -3.08 16 20 C -0.11 -2.14 6.91 31.89 0.22 -1.91 16 21 C -0.12 -2.82 6.83 31.67 0.22 -2.61 16 22 C -0.11 -3.35 6.14 31.32 0.19 -3.16 16 23 N -0.51 -29.69 5.74 -186.36 -1.07 -30.76 16 24 H 0.27 14.78 8.29 -92.71 -0.77 14.01 16 25 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 26 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 27 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 28 H 0.42 11.36 7.27 -92.71 -0.67 10.69 16 29 H 0.39 6.30 7.63 -74.06 -0.57 5.73 16 30 H 0.06 1.64 7.85 -2.38 -0.02 1.62 16 31 H 0.10 1.82 8.06 -2.39 -0.02 1.80 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 2.37 7.96 -2.38 -0.02 2.35 16 37 H 0.06 2.21 6.71 -2.39 -0.02 2.19 16 Total: -1.00 -76.20 305.73 1.46 -74.75 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.13 Total: 32.92 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 4.00 Total: -14.18 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -2.50 Total: -97.64 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.94 Total: -39.09 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -76.20 1.46 -74.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.816 kcal (2) G-P(sol) polarization free energy of solvation -76.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds