Wall clock time and date at job start Mon Mar 30 2020 02:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86795 * 120.00473 * 2 1 4 4 H 1.48500 * 109.46894 * 89.99891 * 3 2 1 5 5 H 1.48497 * 109.47401 * 210.00193 * 3 2 1 6 6 H 1.48511 * 109.46935 * 330.00303 * 3 2 1 7 7 C 1.40035 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99626 * 15.97005 * 7 2 1 9 9 C 1.41329 * 119.99939 * 195.96849 * 7 2 1 10 10 C 1.40610 * 119.79123 * 188.65711 * 9 7 2 11 11 C 1.38304 * 119.13150 * 179.77008 * 10 9 7 12 12 C 1.38697 * 118.66593 * 0.50001 * 11 10 9 13 13 C 1.39622 * 119.49760 * 359.74930 * 12 11 10 14 14 N 1.39277 * 119.57489 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99775 * 18.83855 * 14 13 12 16 16 O 1.21277 * 120.00259 * 5.59383 * 15 14 13 17 17 C 1.50699 * 120.00071 * 185.58130 * 15 14 13 18 18 C 1.53181 * 109.54683 * 299.56316 * 17 15 14 19 19 C 1.53085 * 109.16312 * 183.14833 * 18 17 15 20 20 O 1.42907 * 109.41705 * 57.60996 * 19 18 17 21 21 C 1.42899 * 114.09713 * 298.84235 * 20 19 18 22 22 C 1.53097 * 109.41593 * 61.15421 * 21 20 19 23 23 N 1.31924 * 120.85444 * 359.97438 * 13 12 11 24 24 H 0.96991 * 120.00068 * 174.93117 * 1 2 3 25 25 H 1.08000 * 120.43088 * 0.02929 * 10 9 7 26 26 H 1.08003 * 120.66432 * 180.22544 * 11 10 9 27 27 H 1.08005 * 120.24633 * 179.76650 * 12 11 10 28 28 H 0.96998 * 120.00019 * 198.84993 * 14 13 12 29 29 H 1.09007 * 109.54080 * 59.82637 * 17 15 14 30 30 H 1.08994 * 109.52011 * 303.05861 * 18 17 15 31 31 H 1.09003 * 109.51934 * 63.24382 * 18 17 15 32 32 H 1.09000 * 109.48678 * 297.62638 * 19 18 17 33 33 H 1.09008 * 109.48102 * 177.59034 * 19 18 17 34 34 H 1.09003 * 109.48022 * 301.17429 * 21 20 19 35 35 H 1.08991 * 109.49447 * 181.14489 * 21 20 19 36 36 H 1.09000 * 109.51884 * 182.48856 * 22 21 20 37 37 H 1.08995 * 109.52183 * 62.29924 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.4891 2.0462 1.4001 5 1 3.5391 1.4400 -0.7001 6 1 1.4390 2.6527 -0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 1.4987 -2.1298 -0.2583 9 6 3.3800 -1.2366 0.3362 10 6 4.1222 -2.4177 0.1596 11 6 5.4654 -2.4244 0.4890 12 6 6.0324 -1.2637 0.9939 13 6 5.2412 -0.1241 1.1512 14 7 5.8090 1.0425 1.6576 15 6 7.1469 1.2045 1.6375 16 8 7.8491 0.3823 1.0882 17 6 7.7702 2.4074 2.2974 18 6 7.2424 3.6850 1.6375 19 6 7.9394 4.8972 2.2605 20 8 9.3534 4.7672 2.0989 21 6 9.9099 3.6154 2.7358 22 6 9.2920 2.3515 2.1319 23 7 3.9629 -0.1378 0.8254 24 1 -0.4850 -0.8367 -0.0742 25 1 3.6505 -3.3068 -0.2322 26 1 6.0598 -3.3169 0.3599 27 1 7.0782 -1.2416 1.2631 28 1 5.2417 1.7382 2.0248 29 1 7.5187 2.4126 3.3580 30 1 7.4503 3.6551 0.5679 31 1 6.1670 3.7605 1.7985 32 1 7.6982 4.9495 3.3222 33 1 7.5991 5.8066 1.7650 34 1 9.6944 3.6508 3.8037 35 1 10.9890 3.6011 2.5831 36 1 9.6825 1.4736 2.6465 37 1 9.5413 2.2947 1.0723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882477397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:19 Heat of formation + Delta-G solvation = -65.218253 kcal Electronic energy + Delta-G solvation = -21296.735719 eV Core-core repulsion = 18038.174869 eV Total energy + Delta-G solvation = -3258.560850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.60693 -39.13874 -37.98366 -34.64022 -33.98343 -33.41624 -31.32887 -31.08155 -29.54586 -26.28599 -25.25069 -23.77603 -22.48948 -21.78500 -20.64434 -19.69773 -18.40916 -17.61302 -16.59441 -16.22549 -16.15680 -15.22314 -15.07675 -14.91427 -14.67180 -14.12648 -13.87428 -13.77014 -13.27616 -13.02733 -12.58898 -12.48833 -12.25470 -11.89785 -11.71915 -11.54214 -11.20072 -10.98803 -10.88314 -10.59703 -10.35578 -10.01950 -9.90585 -9.75060 -9.17074 -9.10952 -8.54515 -7.94598 -7.44434 -7.30550 -4.78834 2.17293 2.64278 2.99142 3.22623 3.43276 3.57412 3.66728 3.86695 4.29732 4.39120 4.51944 4.54747 4.60758 4.75860 4.96821 5.06440 5.21604 5.33436 5.38781 5.45258 5.51454 5.59481 5.78703 5.85193 5.90004 6.05260 6.10994 6.44718 6.50627 6.53844 6.95217 7.11645 7.17523 7.41157 7.55004 7.58784 7.75392 8.08966 8.26337 8.41847 8.63056 9.41159 9.94611 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023276 B = 0.005329 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.680825 B = 5252.602283 C = 6340.693508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.049 3.951 3 Si 1.142 2.858 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.326 1.326 7 C -0.482 4.482 8 H 0.084 0.916 9 C 0.274 3.726 10 C -0.277 4.277 11 C -0.037 4.037 12 C -0.312 4.312 13 C 0.382 3.618 14 N -0.654 5.654 15 C 0.520 3.480 16 O -0.511 6.511 17 C -0.107 4.107 18 C -0.153 4.153 19 C 0.064 3.936 20 O -0.383 6.383 21 C 0.061 3.939 22 C -0.136 4.136 23 N -0.595 5.595 24 H 0.285 0.715 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.406 0.594 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.393 8.246 6.289 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.173 4.173 3 Si 0.976 3.024 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.258 1.258 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.150 3.850 10 C -0.299 4.299 11 C -0.061 4.061 12 C -0.336 4.336 13 C 0.151 3.849 14 N -0.299 5.299 15 C 0.306 3.694 16 O -0.386 6.386 17 C -0.128 4.128 18 C -0.191 4.191 19 C -0.013 4.013 20 O -0.302 6.302 21 C -0.015 4.015 22 C -0.174 4.174 23 N -0.320 5.320 24 H 0.096 0.904 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.155 0.845 28 H 0.241 0.759 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.230 10.046 5.981 17.656 hybrid contribution -0.146 -2.636 0.172 2.646 sum 13.084 7.410 6.153 16.247 Atomic orbital electron populations 1.70611 1.08258 1.33065 1.30571 1.27649 0.95219 1.05929 0.88463 0.82150 0.72809 0.70132 0.77355 1.21515 1.20746 1.25826 1.20669 0.93162 0.97037 1.40483 0.89799 1.18184 0.92941 0.86055 0.87797 1.21618 0.94646 0.99843 1.13832 1.20919 0.94354 0.96316 0.94511 1.21508 1.01799 0.92950 1.17372 1.18105 0.89721 0.84577 0.92526 1.43328 1.07288 1.19415 1.59844 1.20504 0.81537 0.87411 0.79947 1.90626 1.61550 1.43730 1.42680 1.21390 0.97092 0.93171 1.01182 1.22268 1.01143 0.93730 1.01998 1.22573 0.80958 0.97818 0.99914 1.87943 1.21305 1.44677 1.76275 1.22627 0.98485 0.84626 0.95798 1.22033 0.92697 0.98778 1.03865 1.66186 1.10212 1.30286 1.25335 0.90411 0.87697 0.87656 0.84502 0.75850 0.88102 0.89992 0.89935 0.92815 0.88338 0.93074 0.88503 0.89960 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.65 13.65 55.55 0.76 -20.89 16 2 C 0.05 1.33 5.51 -17.34 -0.10 1.23 16 3 Si 1.14 27.33 25.93 -169.99 -4.41 22.93 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.90 6.55 56.52 0.37 -6.53 16 6 H -0.33 -7.65 7.11 56.52 0.40 -7.24 16 7 C -0.48 -13.10 9.51 -37.73 -0.36 -13.46 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.27 7.23 6.27 -85.00 -0.53 6.70 16 10 C -0.28 -6.67 9.83 -38.66 -0.38 -7.05 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.31 -7.08 8.83 -38.90 -0.34 -7.42 16 13 C 0.38 8.77 7.51 -154.97 -1.16 7.60 16 14 N -0.65 -11.95 5.34 -11.40 -0.06 -12.01 16 15 C 0.52 8.48 7.00 -10.99 -0.08 8.40 16 16 O -0.51 -9.95 12.77 5.56 0.07 -9.88 16 17 C -0.11 -1.21 2.62 -91.59 -0.24 -1.45 16 18 C -0.15 -1.57 5.29 -26.59 -0.14 -1.71 16 19 C 0.06 0.56 6.84 37.20 0.25 0.81 16 20 O -0.38 -4.07 10.77 -35.23 -0.38 -4.45 16 21 C 0.06 0.54 6.84 37.21 0.25 0.79 16 22 C -0.14 -1.45 4.73 -26.59 -0.13 -1.57 16 23 N -0.60 -15.07 5.07 -10.26 -0.05 -15.12 16 24 H 0.28 7.34 8.72 -40.82 -0.36 6.99 16 25 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 26 H 0.11 1.99 8.06 -52.48 -0.42 1.57 16 27 H 0.14 3.03 5.33 -52.50 -0.28 2.75 16 28 H 0.41 6.44 8.19 -40.82 -0.33 6.11 16 29 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.76 7.58 -51.93 -0.39 0.37 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.02 8.02 -51.93 -0.42 0.61 16 LS Contribution 304.25 15.07 4.59 4.59 Total: -1.00 -31.23 304.25 -7.67 -38.90 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.84 Total: 4.26 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.35 Total: -8.33 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.65 Total: -48.02 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.31 Total: -14.33 kcal Atomic # 14 Polarization: 27.33 SS G_CDS: -4.41 Total: 22.93 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.23 -7.67 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882477397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.314 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds