Wall clock time and date at job start Mon Mar 30 2020 02:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86795 * 120.00473 * 2 1 4 4 H 1.48500 * 109.46894 * 89.99891 * 3 2 1 5 5 H 1.48497 * 109.47401 * 210.00193 * 3 2 1 6 6 H 1.48511 * 109.46935 * 330.00303 * 3 2 1 7 7 C 1.40035 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99626 * 15.97005 * 7 2 1 9 9 C 1.41329 * 119.99939 * 195.96849 * 7 2 1 10 10 C 1.40610 * 119.79123 * 188.65711 * 9 7 2 11 11 C 1.38304 * 119.13150 * 179.77008 * 10 9 7 12 12 C 1.38697 * 118.66593 * 0.50001 * 11 10 9 13 13 C 1.39622 * 119.49760 * 359.74930 * 12 11 10 14 14 N 1.39277 * 119.57489 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99775 * 18.83855 * 14 13 12 16 16 O 1.21277 * 120.00259 * 5.59383 * 15 14 13 17 17 C 1.50699 * 120.00071 * 185.58130 * 15 14 13 18 18 C 1.53181 * 109.54683 * 299.56316 * 17 15 14 19 19 C 1.53085 * 109.16312 * 183.14833 * 18 17 15 20 20 O 1.42907 * 109.41705 * 57.60996 * 19 18 17 21 21 C 1.42899 * 114.09713 * 298.84235 * 20 19 18 22 22 C 1.53097 * 109.41593 * 61.15421 * 21 20 19 23 23 N 1.31924 * 120.85444 * 359.97438 * 13 12 11 24 24 H 0.96991 * 120.00068 * 174.93117 * 1 2 3 25 25 H 1.08000 * 120.43088 * 0.02929 * 10 9 7 26 26 H 1.08003 * 120.66432 * 180.22544 * 11 10 9 27 27 H 1.08005 * 120.24633 * 179.76650 * 12 11 10 28 28 H 0.96998 * 120.00019 * 198.84993 * 14 13 12 29 29 H 1.09007 * 109.54080 * 59.82637 * 17 15 14 30 30 H 1.08994 * 109.52011 * 303.05861 * 18 17 15 31 31 H 1.09003 * 109.51934 * 63.24382 * 18 17 15 32 32 H 1.09000 * 109.48678 * 297.62638 * 19 18 17 33 33 H 1.09008 * 109.48102 * 177.59034 * 19 18 17 34 34 H 1.09003 * 109.48022 * 301.17429 * 21 20 19 35 35 H 1.08991 * 109.49447 * 181.14489 * 21 20 19 36 36 H 1.09000 * 109.51884 * 182.48856 * 22 21 20 37 37 H 1.08995 * 109.52183 * 62.29924 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.4891 2.0462 1.4001 5 1 3.5391 1.4400 -0.7001 6 1 1.4390 2.6527 -0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 1.4987 -2.1298 -0.2583 9 6 3.3800 -1.2366 0.3362 10 6 4.1222 -2.4177 0.1596 11 6 5.4654 -2.4244 0.4890 12 6 6.0324 -1.2637 0.9939 13 6 5.2412 -0.1241 1.1512 14 7 5.8090 1.0425 1.6576 15 6 7.1469 1.2045 1.6375 16 8 7.8491 0.3823 1.0882 17 6 7.7702 2.4074 2.2974 18 6 7.2424 3.6850 1.6375 19 6 7.9394 4.8972 2.2605 20 8 9.3534 4.7672 2.0989 21 6 9.9099 3.6154 2.7358 22 6 9.2920 2.3515 2.1319 23 7 3.9629 -0.1378 0.8254 24 1 -0.4850 -0.8367 -0.0742 25 1 3.6505 -3.3068 -0.2322 26 1 6.0598 -3.3169 0.3599 27 1 7.0782 -1.2416 1.2631 28 1 5.2417 1.7382 2.0248 29 1 7.5187 2.4126 3.3580 30 1 7.4503 3.6551 0.5679 31 1 6.1670 3.7605 1.7985 32 1 7.6982 4.9495 3.3222 33 1 7.5991 5.8066 1.7650 34 1 9.6944 3.6508 3.8037 35 1 10.9890 3.6011 2.5831 36 1 9.6825 1.4736 2.6465 37 1 9.5413 2.2947 1.0723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882477397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:18 Heat of formation + Delta-G solvation = -85.342336 kcal Electronic energy + Delta-G solvation = -21297.608365 eV Core-core repulsion = 18038.174869 eV Total energy + Delta-G solvation = -3259.433495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.94206 -40.40230 -39.38391 -36.31119 -35.46176 -34.72972 -32.98164 -32.06548 -31.29386 -27.60887 -26.85143 -24.57519 -23.90229 -23.57331 -21.89079 -20.99897 -20.27916 -19.03247 -18.06977 -17.25991 -16.94131 -16.87236 -16.40561 -16.29173 -15.79374 -15.70838 -15.34417 -14.89375 -14.66738 -14.56371 -14.25621 -14.01135 -13.73004 -13.32472 -12.98282 -12.75458 -12.50943 -12.29496 -12.19577 -11.87651 -11.73166 -11.58587 -11.38305 -11.06341 -10.82122 -10.46593 -10.38767 -9.87112 -9.34189 -9.23706 -6.82106 0.47926 0.74183 1.48980 1.49221 1.70857 1.82112 1.98819 2.38723 2.61368 3.00921 3.37903 3.55480 3.63039 3.74110 4.00960 4.05974 4.19130 4.31759 4.40215 4.49996 4.61213 4.64996 4.67213 4.68004 4.77257 4.80919 4.85451 5.07565 5.11395 5.25566 5.34497 5.37574 5.42035 5.70458 5.80021 5.93151 6.27149 6.29575 6.40418 6.63542 7.01736 7.50799 7.91338 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023276 B = 0.005329 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.680825 B = 5252.602283 C = 6340.693508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.022 3.978 3 Si 1.173 2.827 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.320 1.320 7 C -0.513 4.513 8 H 0.069 0.931 9 C 0.258 3.742 10 C -0.295 4.295 11 C -0.030 4.030 12 C -0.312 4.312 13 C 0.372 3.628 14 N -0.651 5.651 15 C 0.519 3.481 16 O -0.544 6.544 17 C -0.097 4.097 18 C -0.153 4.153 19 C 0.065 3.935 20 O -0.403 6.403 21 C 0.064 3.936 22 C -0.134 4.134 23 N -0.607 5.607 24 H 0.282 0.718 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.147 0.853 28 H 0.418 0.582 29 H 0.134 0.866 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.394 9.708 7.890 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.195 4.195 3 Si 1.003 2.997 4 H -0.194 1.194 5 H -0.222 1.222 6 H -0.252 1.252 7 C -0.546 4.546 8 H 0.087 0.913 9 C 0.133 3.867 10 C -0.317 4.317 11 C -0.055 4.055 12 C -0.336 4.336 13 C 0.140 3.860 14 N -0.297 5.297 15 C 0.309 3.691 16 O -0.420 6.420 17 C -0.118 4.118 18 C -0.191 4.191 19 C -0.012 4.012 20 O -0.323 6.323 21 C -0.012 4.012 22 C -0.172 4.172 23 N -0.332 5.332 24 H 0.093 0.907 25 H 0.132 0.868 26 H 0.160 0.840 27 H 0.165 0.835 28 H 0.256 0.744 29 H 0.151 0.849 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.237 11.528 7.610 20.566 hybrid contribution -0.559 -3.165 -0.319 3.229 sum 14.678 8.364 7.291 18.400 Atomic orbital electron populations 1.70634 1.08507 1.32963 1.32553 1.28444 0.95464 1.07692 0.87947 0.81757 0.71389 0.68358 0.78194 1.19440 1.22194 1.25170 1.20674 0.94133 0.96842 1.42935 0.91321 1.18377 0.93007 0.87364 0.87937 1.21783 0.95583 0.99642 1.14688 1.21321 0.93813 0.97540 0.92789 1.21865 1.02265 0.93107 1.16337 1.18490 0.89151 0.86407 0.91936 1.43436 1.08243 1.18424 1.59618 1.21505 0.80450 0.88269 0.78914 1.90594 1.61984 1.45397 1.44038 1.21479 0.97017 0.90933 1.02365 1.22307 1.02131 0.93861 1.00842 1.22702 0.79922 0.97259 1.01301 1.87929 1.22311 1.45184 1.76829 1.22717 0.98946 0.82907 0.96668 1.22031 0.92325 1.00204 1.02618 1.66189 1.11367 1.30094 1.25560 0.90686 0.86807 0.84031 0.83542 0.74410 0.84874 0.92039 0.88750 0.90496 0.87202 0.90788 0.87368 0.89761 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.24 13.65 21.84 0.30 -44.94 16 2 C 0.02 1.21 5.51 85.29 0.47 1.68 16 3 Si 1.17 55.07 25.93 68.60 1.78 56.85 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -14.31 6.55 99.48 0.65 -13.66 16 6 H -0.32 -14.52 7.11 99.48 0.71 -13.81 16 7 C -0.51 -28.67 9.51 23.47 0.22 -28.45 16 8 H 0.07 3.90 8.06 -2.91 -0.02 3.87 16 9 C 0.26 13.70 6.27 40.20 0.25 13.95 16 10 C -0.29 -14.07 9.83 22.86 0.22 -13.84 16 11 C -0.03 -1.30 10.15 22.40 0.23 -1.07 16 12 C -0.31 -13.61 8.83 22.71 0.20 -13.41 16 13 C 0.37 16.57 7.51 133.23 1.00 17.57 16 14 N -0.65 -22.46 5.34 -308.38 -1.65 -24.11 16 15 C 0.52 15.88 7.00 87.66 0.61 16.50 16 16 O -0.54 -20.38 12.77 -3.02 -0.04 -20.42 16 17 C -0.10 -1.91 2.62 -11.42 -0.03 -1.94 16 18 C -0.15 -2.71 5.29 30.68 0.16 -2.55 16 19 C 0.06 0.90 6.84 72.01 0.49 1.39 16 20 O -0.40 -7.36 10.77 -148.98 -1.60 -8.97 16 21 C 0.06 0.92 6.84 72.01 0.49 1.41 16 22 C -0.13 -2.54 4.73 30.69 0.15 -2.39 16 23 N -0.61 -30.33 5.07 -186.37 -0.95 -31.27 16 24 H 0.28 15.05 8.72 -92.72 -0.81 14.24 16 25 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 26 H 0.14 4.91 8.06 -2.91 -0.02 4.89 16 27 H 0.15 6.18 5.33 -3.17 -0.02 6.17 16 28 H 0.42 12.21 8.19 -92.71 -0.76 11.45 16 29 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.44 7.58 -2.39 -0.02 1.42 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 1.39 8.02 -2.39 -0.02 1.37 16 Total: -1.00 -67.72 304.25 2.55 -65.17 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.24 Total: 18.84 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 4.47 Total: -11.15 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -2.30 Total: -100.32 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -1.64 Total: -29.39 kcal Atomic # 14 Polarization: 55.07 SS G_CDS: 1.78 Total: 56.85 kcal Total: -67.72 2.55 -65.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882477397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.176 kcal (2) G-P(sol) polarization free energy of solvation -67.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds