Wall clock time and date at job start Mon Mar 30 2020 02:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 120.00203 * 2 1 4 4 H 1.48496 * 109.46907 * 240.00048 * 3 2 1 5 5 H 1.48502 * 109.46563 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47129 * 119.99475 * 3 2 1 7 7 C 1.37880 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47065 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99988 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99983 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46884 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 H 1.09006 * 110.01928 * 306.39743 * 16 15 14 18 18 C 1.54258 * 110.03641 * 185.00331 * 16 15 14 19 19 C 1.54889 * 104.19830 * 217.10610 * 18 16 15 20 20 C 1.54895 * 102.74802 * 37.94056 * 19 18 16 21 21 C 1.53882 * 110.03407 * 67.83463 * 16 15 14 22 22 F 1.39895 * 110.03222 * 238.57412 * 21 16 15 23 23 F 1.39897 * 110.02841 * 0.02562 * 21 16 15 24 24 H 0.96999 * 119.99529 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47049 * 59.99069 * 9 7 2 26 26 H 1.08998 * 109.47040 * 299.99786 * 9 7 2 27 27 H 1.09005 * 109.46784 * 59.99929 * 10 9 7 28 28 H 1.08998 * 109.46854 * 300.00385 * 10 9 7 29 29 H 1.09001 * 109.46782 * 60.00304 * 14 13 11 30 30 H 1.08992 * 109.47385 * 300.00392 * 14 13 11 31 31 H 1.09002 * 109.47398 * 300.00338 * 15 14 13 32 32 H 1.09001 * 109.47194 * 60.00518 * 15 14 13 33 33 H 1.09005 * 110.48525 * 335.78486 * 18 16 15 34 34 H 1.08996 * 110.49340 * 98.42442 * 18 16 15 35 35 H 1.08999 * 110.75791 * 156.25375 * 19 18 16 36 36 H 1.08998 * 110.75780 * 279.62519 * 19 18 16 37 37 H 1.08998 * 110.48217 * 80.73820 * 20 19 18 38 38 H 1.09002 * 110.48581 * 203.24715 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2834 -4.9671 0.0011 13 8 2.1628 -6.1297 0.0008 14 6 1.3720 -7.3474 0.0008 15 6 2.3040 -8.5607 0.0010 16 6 1.4707 -9.8439 0.0004 17 1 0.7575 -9.8260 0.8245 18 6 2.3936 -11.0734 0.1269 19 6 1.7320 -12.1401 -0.7806 20 6 1.2235 -11.3011 -1.9793 21 6 0.7267 -9.9887 -1.3388 22 9 -0.6527 -10.0564 -1.1157 23 9 1.0257 -8.9059 -2.1725 24 1 -0.4849 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8719 -3.6043 -0.8894 29 1 0.7429 -7.3721 -0.8890 30 1 0.7434 -7.3724 0.8909 31 1 2.9329 -8.5359 -0.8890 32 1 2.9327 -8.5358 0.8910 33 1 3.3957 -10.8367 -0.2308 34 1 2.4283 -11.4199 1.1598 35 1 2.4652 -12.8770 -1.1083 36 1 0.9007 -12.6227 -0.2667 37 1 2.0367 -11.1012 -2.6771 38 1 0.4058 -11.8147 -2.4849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884516863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:56 Heat of formation + Delta-G solvation = -218.303269 kcal Electronic energy + Delta-G solvation = -21426.470410 eV Core-core repulsion = 17710.582110 eV Total energy + Delta-G solvation = -3715.888301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.18842 -47.21764 -39.86720 -38.16274 -36.14915 -33.54834 -32.96093 -31.07795 -28.55113 -27.56291 -25.84172 -23.17840 -22.06882 -21.43589 -20.51584 -19.67656 -17.97925 -17.40899 -17.03247 -16.65656 -16.17960 -15.93698 -15.37747 -14.90048 -14.67155 -14.46249 -14.32395 -13.79179 -13.51054 -13.47068 -12.99110 -12.74112 -12.28340 -12.20305 -12.16599 -11.89607 -11.71494 -11.62713 -11.35992 -11.18693 -11.11310 -10.92290 -10.77499 -10.63951 -10.14456 -9.99234 -9.86569 -9.50149 -9.16056 -8.34935 -5.98754 -4.03740 2.90211 3.08655 3.34629 3.39085 3.40888 3.41382 3.56146 3.80812 4.02258 4.45981 4.51984 4.61980 4.71050 4.83798 4.85496 4.90273 5.07156 5.20767 5.28484 5.36353 5.40172 5.41292 5.48192 5.52314 5.66044 5.72033 5.84789 5.96114 6.16518 6.24325 6.70659 7.00991 7.69365 7.77187 8.01225 8.30051 8.47209 9.03316 9.60024 11.12280 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.048338 B = 0.002905 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.114482 B = 9635.754923 C = 9877.428875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.455 3.545 12 O -0.505 6.505 13 O -0.366 6.366 14 C 0.054 3.946 15 C -0.111 4.111 16 C -0.130 4.130 17 H 0.104 0.896 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.162 4.162 21 C 0.279 3.721 22 F -0.197 7.197 23 F -0.191 7.191 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.962 -26.590 -1.002 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.140 4.140 11 C 0.299 3.701 12 O -0.392 6.392 13 O -0.284 6.284 14 C -0.020 4.020 15 C -0.148 4.148 16 C -0.149 4.149 17 H 0.122 0.878 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.200 4.200 21 C 0.242 3.758 22 F -0.178 7.178 23 F -0.171 7.171 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.383 -26.465 -1.021 27.026 hybrid contribution 0.014 1.010 -0.087 1.014 sum 5.397 -25.455 -1.108 26.044 Atomic orbital electron populations 1.69988 1.06100 1.26849 1.49868 1.25028 0.94858 0.99323 0.95143 0.86596 0.79498 0.82896 0.78622 1.20168 1.21264 1.20168 1.21125 0.93031 0.90672 1.51878 0.92355 1.19014 0.93247 0.89278 0.98899 1.21753 1.00638 0.87693 1.03937 1.24758 0.87956 0.85697 0.71709 1.90635 1.15945 1.87700 1.44902 1.86511 1.42083 1.14949 1.84851 1.23140 0.93773 0.82067 1.03048 1.21528 0.98145 0.90425 1.04702 1.22787 0.99077 0.97061 0.95951 0.87770 1.22412 0.98794 0.92934 1.01195 1.22490 1.00977 0.97506 0.95115 1.23366 1.03412 0.93666 0.99570 1.21891 0.77307 0.85861 0.90701 1.93032 1.32861 1.96621 1.95259 1.92999 1.92786 1.57658 1.73685 0.92797 0.95588 0.95604 0.89013 0.88977 0.90459 0.91801 0.89705 0.89544 0.90031 0.89923 0.89826 0.90415 0.88254 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.47 13.29 55.43 0.74 -26.74 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 10 C -0.10 -2.18 5.75 -27.88 -0.16 -2.34 16 11 C 0.46 9.54 7.96 36.01 0.29 9.83 16 12 O -0.51 -12.26 15.73 -18.75 -0.29 -12.55 16 13 O -0.37 -6.43 10.22 -39.26 -0.40 -6.83 16 14 C 0.05 0.80 5.18 37.16 0.19 0.99 16 15 C -0.11 -1.13 4.51 -26.73 -0.12 -1.25 16 16 C -0.13 -1.08 2.78 -89.50 -0.25 -1.33 16 17 H 0.10 0.86 8.02 -51.93 -0.42 0.44 16 18 C -0.12 -0.62 6.36 -25.08 -0.16 -0.78 16 19 C -0.12 -0.59 6.91 -24.74 -0.17 -0.77 16 20 C -0.16 -1.08 6.40 -25.07 -0.16 -1.24 16 21 C 0.28 2.79 2.29 -25.61 -0.06 2.74 16 22 F -0.20 -2.39 17.04 2.25 0.04 -2.35 16 23 F -0.19 -2.43 13.40 2.25 0.03 -2.40 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 26 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 28 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 29 H 0.08 1.26 5.95 -51.93 -0.31 0.95 16 30 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 31 H 0.08 0.86 7.63 -51.93 -0.40 0.46 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.40 7.85 -51.93 -0.41 -0.01 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.59 8.12 -51.93 -0.42 0.16 16 38 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 LS Contribution 322.41 15.07 4.86 4.86 Total: -1.00 -33.77 322.41 -6.90 -40.67 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -5.71 Total: -4.18 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.13 Total: -7.17 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.74 Total: -26.74 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.70 Total: -19.38 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.07 Total: -4.75 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.77 -6.90 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884516863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.638 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds