Wall clock time and date at job start Mon Mar 30 2020 02:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 120.00203 * 2 1 4 4 H 1.48496 * 109.46907 * 240.00048 * 3 2 1 5 5 H 1.48502 * 109.46563 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47129 * 119.99475 * 3 2 1 7 7 C 1.37880 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47065 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99988 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99983 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46884 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 H 1.09006 * 110.01928 * 306.39743 * 16 15 14 18 18 C 1.54258 * 110.03641 * 185.00331 * 16 15 14 19 19 C 1.54889 * 104.19830 * 217.10610 * 18 16 15 20 20 C 1.54895 * 102.74802 * 37.94056 * 19 18 16 21 21 C 1.53882 * 110.03407 * 67.83463 * 16 15 14 22 22 F 1.39895 * 110.03222 * 238.57412 * 21 16 15 23 23 F 1.39897 * 110.02841 * 0.02562 * 21 16 15 24 24 H 0.96999 * 119.99529 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47049 * 59.99069 * 9 7 2 26 26 H 1.08998 * 109.47040 * 299.99786 * 9 7 2 27 27 H 1.09005 * 109.46784 * 59.99929 * 10 9 7 28 28 H 1.08998 * 109.46854 * 300.00385 * 10 9 7 29 29 H 1.09001 * 109.46782 * 60.00304 * 14 13 11 30 30 H 1.08992 * 109.47385 * 300.00392 * 14 13 11 31 31 H 1.09002 * 109.47398 * 300.00338 * 15 14 13 32 32 H 1.09001 * 109.47194 * 60.00518 * 15 14 13 33 33 H 1.09005 * 110.48525 * 335.78486 * 18 16 15 34 34 H 1.08996 * 110.49340 * 98.42442 * 18 16 15 35 35 H 1.08999 * 110.75791 * 156.25375 * 19 18 16 36 36 H 1.08998 * 110.75780 * 279.62519 * 19 18 16 37 37 H 1.08998 * 110.48217 * 80.73820 * 20 19 18 38 38 H 1.09002 * 110.48581 * 203.24715 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2834 -4.9671 0.0011 13 8 2.1628 -6.1297 0.0008 14 6 1.3720 -7.3474 0.0008 15 6 2.3040 -8.5607 0.0010 16 6 1.4707 -9.8439 0.0004 17 1 0.7575 -9.8260 0.8245 18 6 2.3936 -11.0734 0.1269 19 6 1.7320 -12.1401 -0.7806 20 6 1.2235 -11.3011 -1.9793 21 6 0.7267 -9.9887 -1.3388 22 9 -0.6527 -10.0564 -1.1157 23 9 1.0257 -8.9059 -2.1725 24 1 -0.4849 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8719 -3.6043 -0.8894 29 1 0.7429 -7.3721 -0.8890 30 1 0.7434 -7.3724 0.8909 31 1 2.9329 -8.5359 -0.8890 32 1 2.9327 -8.5358 0.8910 33 1 3.3957 -10.8367 -0.2308 34 1 2.4283 -11.4199 1.1598 35 1 2.4652 -12.8770 -1.1083 36 1 0.9007 -12.6227 -0.2667 37 1 2.0367 -11.1012 -2.6771 38 1 0.4058 -11.8147 -2.4849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884516863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:56 Heat of formation + Delta-G solvation = -237.512512 kcal Electronic energy + Delta-G solvation = -21427.303385 eV Core-core repulsion = 17710.582110 eV Total energy + Delta-G solvation = -3716.721276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.05061 -48.11159 -41.49842 -38.83865 -37.65998 -35.66618 -33.88256 -33.06683 -29.28121 -28.53807 -27.61768 -24.56643 -23.52378 -22.10477 -21.56138 -21.08813 -19.11129 -18.78321 -18.23012 -18.04159 -17.59704 -17.09837 -16.93008 -16.48112 -15.83754 -15.43343 -15.04660 -14.99189 -14.63681 -14.47722 -14.23773 -14.16430 -14.03437 -13.37239 -13.15609 -12.98724 -12.84668 -12.78391 -12.55177 -12.45842 -12.17737 -12.07373 -12.01437 -11.77265 -11.75827 -11.60030 -11.43352 -11.27008 -11.25787 -10.58059 -8.20647 -6.35160 1.20182 1.42554 1.47589 1.54971 1.66211 2.42800 2.72764 2.95656 3.12857 3.17905 3.29678 3.73551 3.85883 3.89023 4.08795 4.17015 4.26423 4.27569 4.31727 4.40217 4.43417 4.49318 4.60406 4.78446 4.82781 4.86899 4.96018 5.08030 5.10230 5.15969 5.34023 5.38644 5.45947 5.52643 5.79071 6.11528 6.75945 6.84401 7.35246 8.92043 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.048338 B = 0.002905 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.114482 B = 9635.754923 C = 9877.428875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.038 3.962 10 C -0.093 4.093 11 C 0.462 3.538 12 O -0.548 6.548 13 O -0.353 6.353 14 C 0.047 3.953 15 C -0.101 4.101 16 C -0.127 4.127 17 H 0.103 0.897 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.158 4.158 21 C 0.257 3.743 22 F -0.215 7.215 23 F -0.212 7.212 24 H 0.264 0.736 25 H -0.013 1.013 26 H -0.011 1.011 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.926 -27.770 -0.610 29.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.000 4.000 10 C -0.130 4.130 11 C 0.307 3.693 12 O -0.438 6.438 13 O -0.270 6.270 14 C -0.027 4.027 15 C -0.138 4.138 16 C -0.147 4.147 17 H 0.121 0.879 18 C -0.146 4.146 19 C -0.154 4.154 20 C -0.196 4.196 21 C 0.221 3.779 22 F -0.197 7.197 23 F -0.193 7.193 24 H 0.073 0.927 25 H 0.005 0.995 26 H 0.008 0.992 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.385 -27.682 -0.629 28.931 hybrid contribution -0.968 1.301 -0.222 1.637 sum 7.417 -26.381 -0.851 27.417 Atomic orbital electron populations 1.70166 1.08339 1.28048 1.51146 1.26151 0.95750 1.04024 0.94428 0.85324 0.78010 0.77067 0.79557 1.18674 1.21322 1.18547 1.21619 0.94169 0.91185 1.51338 0.90244 1.18801 0.93711 0.92119 0.95323 1.21529 0.99288 0.85776 1.06399 1.24634 0.87194 0.86754 0.70711 1.90627 1.17772 1.88394 1.47042 1.86481 1.41677 1.14856 1.83940 1.23486 0.94881 0.82326 1.02013 1.21552 0.97566 0.88782 1.05893 1.22849 0.99353 0.97579 0.94874 0.87919 1.22446 0.98410 0.91206 1.02516 1.22524 1.01544 0.97399 0.93938 1.23417 1.03720 0.91961 1.00514 1.22636 0.76623 0.86791 0.91862 1.92988 1.34536 1.96719 1.95422 1.92950 1.92853 1.59039 1.74442 0.92729 0.99475 0.99249 0.86255 0.86537 0.92432 0.92109 0.89316 0.87432 0.88883 0.88183 0.87509 0.90175 0.87348 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.47 13.29 21.45 0.28 -59.18 16 2 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 3 Si 0.98 44.25 29.54 68.60 2.03 46.27 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.55 -31.07 9.11 25.60 0.23 -30.83 16 8 H 0.08 4.09 7.74 -2.91 -0.02 4.07 16 9 C 0.04 2.11 4.26 29.85 0.13 2.24 16 10 C -0.09 -3.90 5.75 29.85 0.17 -3.72 16 11 C 0.46 19.58 7.96 71.24 0.57 20.14 16 12 O -0.55 -27.80 15.73 21.98 0.35 -27.46 16 13 O -0.35 -12.16 10.22 -51.42 -0.53 -12.69 16 14 C 0.05 1.38 5.18 71.98 0.37 1.76 16 15 C -0.10 -1.89 4.51 30.59 0.14 -1.76 16 16 C -0.13 -1.94 2.78 -10.07 -0.03 -1.97 16 17 H 0.10 1.59 8.02 -2.38 -0.02 1.57 16 18 C -0.11 -0.82 6.36 31.67 0.20 -0.61 16 19 C -0.12 -0.77 6.91 31.89 0.22 -0.55 16 20 C -0.16 -1.85 6.40 31.67 0.20 -1.65 16 21 C 0.26 5.06 2.29 31.32 0.07 5.13 16 22 F -0.22 -5.39 17.04 44.97 0.77 -4.62 16 23 F -0.21 -5.52 13.40 44.97 0.60 -4.92 16 24 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 25 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 16 26 H -0.01 -0.68 8.10 -2.39 -0.02 -0.70 16 27 H 0.12 4.38 8.14 -2.38 -0.02 4.36 16 28 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 29 H 0.06 1.96 5.95 -2.39 -0.01 1.94 16 30 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 31 H 0.09 1.63 7.63 -2.39 -0.02 1.61 16 32 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 0.53 7.85 -2.38 -0.02 0.52 16 34 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.11 1.07 8.12 -2.39 -0.02 1.05 16 38 H 0.09 1.06 8.12 -2.39 -0.02 1.04 16 Total: -1.00 -76.29 322.41 7.28 -69.00 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.04 Total: 5.30 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 2.74 Total: -11.70 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.28 Total: -59.18 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.18 Total: -40.15 kcal Atomic # 9 Polarization: -10.91 SS G_CDS: 1.37 Total: -9.54 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -76.29 7.28 -69.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884516863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.511 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds