Wall clock time and date at job start Mon Mar 30 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00048 * 2 1 4 4 H 1.48501 * 109.47103 * 239.99528 * 3 2 1 5 5 H 1.48498 * 109.47282 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47309 * 119.99920 * 3 2 1 7 7 C 1.38897 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00334 * 185.35171 * 7 2 1 9 9 N 1.37216 * 119.99664 * 5.35090 * 7 2 1 10 10 C 1.34774 * 120.00104 * 302.05274 * 9 7 2 11 11 O 1.21263 * 120.00011 * 1.95206 * 10 9 7 12 12 C 1.50706 * 119.99655 * 181.94603 * 10 9 7 13 13 H 1.08997 * 109.49027 * 358.12302 * 12 10 9 14 14 C 1.53093 * 109.47897 * 238.09236 * 12 10 9 15 15 C 1.53182 * 109.16001 * 182.41458 * 14 12 10 16 16 C 1.53180 * 109.03883 * 56.97882 * 15 14 12 17 17 C 1.53086 * 109.16310 * 303.02367 * 16 15 14 18 18 O 1.42901 * 109.47490 * 118.15467 * 12 10 9 19 19 C 1.39436 * 119.99693 * 122.05742 * 9 7 2 20 20 C 1.39059 * 119.69513 * 225.39155 * 19 9 7 21 21 C 1.38379 * 119.10066 * 179.97438 * 20 19 9 22 22 C 1.38834 * 118.48832 * 359.97438 * 21 20 19 23 23 C 1.38146 * 119.31049 * 0.02562 * 22 21 20 24 24 N 1.31878 * 120.85158 * 359.74225 * 23 22 21 25 25 H 0.96999 * 119.99764 * 4.99864 * 1 2 3 26 26 H 1.08997 * 109.51983 * 62.51063 * 14 12 10 27 27 H 1.09002 * 109.52286 * 302.31494 * 14 12 10 28 28 H 1.08999 * 109.54180 * 297.11150 * 15 14 12 29 29 H 1.08993 * 109.61545 * 176.89660 * 15 14 12 30 30 H 1.08999 * 109.51799 * 183.11457 * 16 15 14 31 31 H 1.09002 * 109.51557 * 62.92693 * 16 15 14 32 32 H 1.09006 * 109.48254 * 297.62445 * 17 16 15 33 33 H 1.09005 * 109.48106 * 177.59315 * 17 16 15 34 34 H 1.08001 * 120.45355 * 0.02562 * 20 19 9 35 35 H 1.07996 * 120.75931 * 180.02562 * 21 20 19 36 36 H 1.08003 * 120.34307 * 179.97438 * 22 21 20 37 37 H 1.08002 * 119.57071 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0086 -1.2029 0.0005 8 1 3.0851 -1.2050 0.0878 9 7 1.3269 -2.3886 -0.1098 10 6 0.3770 -2.7062 0.7920 11 8 0.1000 -1.9286 1.6803 12 6 -0.3409 -4.0278 0.6963 13 1 0.0158 -4.5731 -0.1775 14 6 -1.8464 -3.7827 0.5657 15 6 -2.5740 -5.1302 0.5297 16 6 -2.2214 -5.9223 1.7925 17 6 -0.7015 -6.0847 1.8758 18 8 -0.0851 -4.7954 1.8743 19 6 1.6171 -3.2650 -1.1548 20 6 0.5790 -3.8502 -1.8714 21 6 0.8810 -4.7177 -2.9064 22 6 2.2163 -4.9703 -3.1904 23 6 3.1964 -4.3536 -2.4370 24 7 2.8784 -3.5278 -1.4592 25 1 -0.4850 0.8369 -0.0732 26 1 -2.0477 -3.2353 -0.3552 27 1 -2.1965 -3.2024 1.4194 28 1 -2.2608 -5.6903 -0.3513 29 1 -3.6505 -4.9639 0.4922 30 1 -2.6910 -6.9050 1.7490 31 1 -2.5791 -5.3852 2.6710 32 1 -0.3494 -6.6569 1.0174 33 1 -0.4419 -6.6106 2.7946 34 1 -0.4490 -3.6302 -1.6241 35 1 0.0959 -5.1868 -3.4807 36 1 2.4860 -5.6426 -3.9914 37 1 4.2365 -4.5469 -2.6545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892471167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:01 Heat of formation + Delta-G solvation = -20.825574 kcal Electronic energy + Delta-G solvation = -22373.883262 eV Core-core repulsion = 19117.247423 eV Total energy + Delta-G solvation = -3256.635839 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31765 -38.94575 -37.51442 -34.40546 -33.38586 -32.33252 -31.95464 -30.65129 -29.17429 -26.09380 -24.45313 -23.50825 -22.88670 -22.40863 -20.21140 -19.46700 -17.66994 -16.91008 -16.22570 -15.68394 -15.51761 -15.23815 -14.92547 -14.41213 -14.16115 -14.06963 -13.62168 -13.31325 -13.06242 -12.73808 -12.49740 -12.37601 -12.24689 -11.66043 -11.31444 -11.10101 -11.02312 -10.88077 -10.70995 -10.68641 -10.32072 -10.15493 -9.47941 -9.29476 -8.97550 -8.78618 -8.64266 -8.13918 -7.11495 -6.19752 -4.13613 1.66948 1.82456 3.29946 3.32846 3.34783 3.55433 3.99561 4.28681 4.56385 4.70027 4.93126 5.01903 5.09837 5.11404 5.23555 5.27419 5.33840 5.45382 5.53418 5.55777 5.60995 5.71675 5.80308 5.88628 6.01083 6.06923 6.11670 6.17563 6.26044 6.35527 6.53550 6.62137 6.67590 7.13717 7.53931 7.65890 8.29447 8.47249 8.89759 8.99142 9.45311 9.95370 10.88389 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.008574 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.111280 B = 3265.037114 C = 4538.905795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.064 3.936 3 Si 0.923 3.077 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.343 4.343 8 H 0.089 0.911 9 N -0.397 5.397 10 C 0.512 3.488 11 O -0.475 6.475 12 C 0.058 3.942 13 H 0.079 0.921 14 C -0.137 4.137 15 C -0.120 4.120 16 C -0.156 4.156 17 C 0.060 3.940 18 O -0.363 6.363 19 C 0.388 3.612 20 C -0.211 4.211 21 C -0.061 4.061 22 C -0.224 4.224 23 C 0.123 3.877 24 N -0.498 5.498 25 H 0.266 0.734 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -12.486 -4.808 13.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.146 4.146 3 Si 0.749 3.251 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.106 0.894 9 N -0.115 5.115 10 C 0.298 3.702 11 O -0.346 6.346 12 C -0.003 4.003 13 H 0.096 0.904 14 C -0.175 4.175 15 C -0.158 4.158 16 C -0.193 4.193 17 C -0.017 4.017 18 O -0.282 6.282 19 C 0.158 3.842 20 C -0.235 4.235 21 C -0.087 4.087 22 C -0.246 4.246 23 C -0.036 4.036 24 N -0.212 5.212 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.699 -11.360 -3.479 12.184 hybrid contribution -0.554 0.270 -0.926 1.112 sum -3.252 -11.091 -4.405 12.369 Atomic orbital electron populations 1.69904 1.06155 1.27834 1.43829 1.25546 0.95328 0.99646 0.94033 0.86101 0.79129 0.80930 0.78964 1.19886 1.20976 1.19609 1.19113 0.91722 0.80532 1.55564 0.89358 1.40994 1.34347 1.15902 1.20272 1.19699 0.81673 0.86193 0.82652 1.90556 1.60933 1.50088 1.32979 1.22751 0.95581 0.93001 0.89001 0.90368 1.21992 0.94097 0.97333 1.04092 1.21600 1.00376 0.96185 0.97597 1.22190 0.97257 1.00587 0.99301 1.22561 0.92003 0.85389 1.01729 1.87995 1.72632 1.27558 1.39989 1.19085 0.88111 0.88616 0.88385 1.22031 1.00369 1.03006 0.98069 1.21287 0.96561 0.95631 0.95236 1.21839 0.93840 1.05117 1.03764 1.22509 0.99457 0.91267 0.90354 1.67339 1.20776 1.15744 1.17340 0.92357 0.90560 0.89900 0.92024 0.91428 0.91254 0.90929 0.93560 0.89027 0.85016 0.85521 0.85694 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.83 11.47 55.49 0.64 -24.20 16 2 C 0.06 1.82 5.07 -17.49 -0.09 1.73 16 3 Si 0.92 22.01 29.56 -169.99 -5.02 16.99 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.34 -9.95 8.70 -14.90 -0.13 -10.08 16 8 H 0.09 2.56 7.84 -52.49 -0.41 2.15 16 9 N -0.40 -10.70 2.65 -60.71 -0.16 -10.87 16 10 C 0.51 13.63 5.85 -10.98 -0.06 13.57 16 11 O -0.48 -14.48 14.95 1.27 0.02 -14.46 16 12 C 0.06 1.20 1.98 -27.83 -0.06 1.15 16 13 H 0.08 1.53 4.22 -51.93 -0.22 1.31 16 14 C -0.14 -2.49 5.05 -26.59 -0.13 -2.62 16 15 C -0.12 -1.61 6.03 -26.54 -0.16 -1.77 16 16 C -0.16 -1.98 6.14 -26.59 -0.16 -2.14 16 17 C 0.06 0.88 6.84 37.20 0.25 1.14 16 18 O -0.36 -7.47 10.39 -39.53 -0.41 -7.88 16 19 C 0.39 8.95 6.14 -154.64 -0.95 8.01 16 20 C -0.21 -4.03 7.15 -39.23 -0.28 -4.31 16 21 C -0.06 -0.92 10.17 -39.31 -0.40 -1.32 16 22 C -0.22 -3.19 10.11 -39.40 -0.40 -3.59 16 23 C 0.12 2.05 11.18 -17.57 -0.20 1.86 16 24 N -0.50 -10.88 10.06 -12.34 -0.12 -11.00 16 25 H 0.27 7.43 8.32 -40.82 -0.34 7.09 16 26 H 0.08 1.39 7.29 -51.93 -0.38 1.01 16 27 H 0.08 1.68 8.01 -51.93 -0.42 1.26 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.13 2.46 5.57 -52.49 -0.29 2.17 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 305.03 15.07 4.60 4.60 Total: -1.00 -34.69 305.03 -7.89 -42.58 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.66 Total: 2.64 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.76 Total: 1.60 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.35 Total: -46.06 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.39 Total: -22.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.69 -7.89 -42.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.751 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds