Wall clock time and date at job start Mon Mar 30 2020 01:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 120.00031 * 2 1 4 4 H 1.08006 * 120.00168 * 202.35395 * 3 2 1 5 5 C 1.38813 * 120.00406 * 22.35461 * 3 2 1 6 6 N 1.31618 * 119.99335 * 11.33737 * 5 3 2 7 7 Si 1.86793 * 120.00268 * 191.33729 * 5 3 2 8 8 H 1.48496 * 109.47291 * 89.99977 * 7 5 3 9 9 H 1.48499 * 109.47221 * 210.00126 * 7 5 3 10 10 H 1.48503 * 109.47171 * 329.99930 * 7 5 3 11 11 C 1.46498 * 119.99926 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.47408 * 269.99818 * 11 2 1 13 13 C 1.35384 * 126.72981 * 94.70877 * 12 11 2 14 14 N 1.36093 * 106.04871 * 180.26653 * 13 12 11 15 15 C 1.40311 * 125.94227 * 179.97438 * 14 13 12 16 16 C 1.38788 * 120.07157 * 359.74021 * 15 14 13 17 17 C 1.38133 * 119.95588 * 179.74620 * 16 15 14 18 18 C 1.38299 * 120.11428 * 0.54864 * 17 16 15 19 19 C 1.38243 * 120.14591 * 359.70427 * 18 17 16 20 20 C 1.38340 * 120.04057 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.05551 * 179.97438 * 20 19 18 22 22 N 1.28726 * 108.12166 * 0.02562 * 14 13 12 23 23 N 1.28610 * 110.23407 * 0.02562 * 22 14 13 24 24 H 1.09002 * 109.47133 * 274.21110 * 1 2 3 25 25 H 1.08997 * 109.46637 * 34.20909 * 1 2 3 26 26 H 1.08997 * 109.46916 * 154.20637 * 1 2 3 27 27 H 0.97007 * 119.99549 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.47012 * 149.99372 * 11 2 1 29 29 H 1.09004 * 109.46971 * 29.99800 * 11 2 1 30 30 H 1.08002 * 126.97609 * 0.24282 * 13 12 11 31 31 H 1.08001 * 120.02093 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.94614 * 180.27588 * 17 16 15 33 33 H 1.07998 * 119.92712 * 179.71915 * 18 17 16 34 34 H 1.08002 * 119.97388 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3557 5 6 1.5340 2.3429 0.4572 6 7 0.3843 2.2690 1.0937 7 14 2.3369 4.0047 0.1691 8 1 1.8682 4.5633 -1.1245 9 1 1.9685 4.9301 1.2705 10 1 3.8125 3.8417 0.1322 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4200 13 6 1.6892 -2.5519 2.1533 14 7 2.2944 -2.6436 3.3688 15 6 1.8519 -3.4167 4.4529 16 6 0.6952 -4.1754 4.3399 17 6 0.2646 -4.9396 5.4069 18 6 0.9779 -4.9413 6.5918 19 6 2.1277 -4.1832 6.7111 20 6 2.5677 -3.4198 5.6445 21 9 3.6911 -2.6784 5.7610 22 7 3.3429 -1.8970 3.3514 23 7 3.4619 -1.3240 2.2062 24 1 -0.3633 0.0755 1.0249 25 1 -0.3632 0.8499 -0.5778 26 1 -0.3633 -0.9253 -0.4472 27 1 -0.0458 3.0775 1.4136 28 1 3.1499 -1.1382 -0.5144 29 1 1.6084 -2.0281 -0.5147 30 1 0.7860 -3.0532 1.8379 31 1 0.1343 -4.1711 3.4170 32 1 -0.6330 -5.5334 5.3173 33 1 0.6360 -5.5364 7.4256 34 1 2.6828 -4.1869 7.6375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906267134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:34 Heat of formation + Delta-G solvation = 122.092332 kcal Electronic energy + Delta-G solvation = -20717.750468 eV Core-core repulsion = 17376.144461 eV Total energy + Delta-G solvation = -3341.606007 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.91086 -42.83215 -39.26947 -35.77031 -34.33877 -31.95332 -31.04894 -30.10319 -29.76753 -26.47653 -25.69387 -24.17158 -23.31323 -21.61954 -21.33155 -20.18903 -18.29348 -17.29612 -16.70983 -16.32019 -16.28008 -15.33652 -15.32089 -14.93136 -14.73946 -14.02289 -13.69415 -13.52103 -13.35182 -13.03343 -12.69567 -12.36690 -12.02576 -11.58225 -11.28273 -11.06568 -10.92598 -10.70582 -10.61662 -10.42445 -10.15595 -9.94724 -9.82823 -9.25422 -8.76902 -8.52404 -8.45246 -6.81610 -5.70478 -3.15095 0.46926 0.78839 2.21261 2.50110 3.19234 3.31714 3.45017 3.50140 3.53420 3.85905 4.25993 4.45304 4.57024 4.68755 4.84292 4.93527 5.24039 5.33355 5.45936 5.55569 5.66064 5.67493 5.76574 5.79672 5.96614 6.04070 6.34412 6.48536 6.62770 6.71574 6.79924 7.10263 7.36090 7.70528 7.88090 8.40812 9.04543 9.25819 9.85853 10.32948 11.35094 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.025586 B = 0.004588 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.093421 B = 6101.093193 C = 6380.721116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.586 5.586 3 C -0.247 4.247 4 H 0.074 0.926 5 C 0.002 3.998 6 N -0.910 5.910 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.277 1.277 11 C 0.220 3.780 12 C 0.002 3.998 13 C -0.066 4.066 14 N -0.260 5.260 15 C 0.109 3.891 16 C -0.098 4.098 17 C -0.109 4.109 18 C -0.094 4.094 19 C -0.138 4.138 20 C 0.112 3.888 21 F -0.112 7.112 22 N -0.085 5.085 23 N -0.237 5.237 24 H 0.026 0.974 25 H 0.050 0.950 26 H -0.001 1.001 27 H 0.252 0.748 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.184 0.816 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 -17.909 8.567 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.307 5.307 3 C -0.377 4.377 4 H 0.092 0.908 5 C -0.196 4.196 6 N -0.555 5.555 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.202 1.202 11 C 0.090 3.910 12 C -0.136 4.136 13 C -0.213 4.213 14 N -0.049 5.049 15 C 0.015 3.985 16 C -0.119 4.119 17 C -0.128 4.128 18 C -0.113 4.113 19 C -0.158 4.158 20 C 0.090 3.910 21 F -0.090 7.090 22 N -0.062 5.062 23 N -0.106 5.106 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.018 0.982 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.201 0.799 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.415 -17.124 9.309 19.542 hybrid contribution -0.548 0.785 -0.221 0.982 sum -1.963 -16.339 9.089 18.800 Atomic orbital electron populations 1.20852 0.82176 0.95879 0.99307 1.44205 1.02031 1.00406 1.84030 1.19308 0.98248 0.84713 1.35396 0.90788 1.25068 0.97669 0.98792 0.98041 1.70072 1.17961 1.27115 1.40347 0.86186 0.79144 0.83737 0.77166 1.21437 1.21825 1.20207 1.19463 0.97212 0.88628 0.85686 1.23993 0.92115 0.95170 1.02370 1.23430 1.04030 1.08268 0.85541 1.44579 1.19182 1.31331 1.09798 1.17820 0.97071 0.97465 0.86151 1.20906 0.93820 0.96028 1.01106 1.21067 1.00492 0.98990 0.92268 1.21129 0.93920 0.98098 0.98183 1.21143 0.98613 0.97868 0.98149 1.17403 0.85499 0.94915 0.93176 1.91634 1.47436 1.73844 1.96064 1.78501 1.04047 1.05720 1.17970 1.75080 1.21830 1.16977 0.96701 0.95572 0.93158 0.98247 0.93816 0.91476 0.92063 0.79891 0.83800 0.84098 0.84269 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 9.01 59.85 0.54 4.49 16 2 N -0.59 -14.95 2.91 -182.50 -0.53 -15.48 16 3 C -0.25 -7.02 9.67 -15.06 -0.15 -7.17 16 4 H 0.07 2.09 7.84 -52.48 -0.41 1.68 16 5 C 0.00 0.07 5.13 -17.43 -0.09 -0.02 16 6 N -0.91 -27.36 10.58 55.49 0.59 -26.77 16 7 Si 0.91 22.89 29.57 -169.99 -5.03 17.86 16 8 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 9 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 C 0.22 4.63 6.27 -5.20 -0.03 4.60 16 12 C 0.00 0.05 6.83 -82.77 -0.57 -0.52 16 13 C -0.07 -1.20 10.85 -16.68 -0.18 -1.38 16 14 N -0.26 -4.89 3.56 -10.42 -0.04 -4.93 16 15 C 0.11 1.61 6.69 -83.49 -0.56 1.05 16 16 C -0.10 -1.04 9.46 -39.42 -0.37 -1.41 16 17 C -0.11 -0.84 10.04 -39.60 -0.40 -1.23 16 18 C -0.09 -0.69 10.04 -39.56 -0.40 -1.09 16 19 C -0.14 -1.33 10.02 -39.54 -0.40 -1.73 16 20 C 0.11 1.57 7.28 -39.26 -0.29 1.29 16 21 F -0.11 -1.89 15.58 2.25 0.04 -1.85 16 22 N -0.08 -1.90 11.40 60.35 0.69 -1.21 16 23 N -0.24 -5.73 12.39 33.29 0.41 -5.31 16 24 H 0.03 0.70 7.42 -51.93 -0.39 0.31 16 25 H 0.05 1.32 7.19 -51.93 -0.37 0.94 16 26 H 0.00 -0.02 7.84 -51.93 -0.41 -0.43 16 27 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 29 H 0.06 1.06 7.86 -51.93 -0.41 0.65 16 30 H 0.18 2.49 7.11 -52.49 -0.37 2.12 16 31 H 0.14 1.27 6.77 -52.49 -0.36 0.92 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -35.58 301.15 -5.75 -41.33 By element: Atomic # 1 Polarization: -1.52 SS G_CDS: -3.53 Total: -5.06 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.88 Total: -3.12 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 1.12 Total: -53.70 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.58 -5.75 -41.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906267134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.425 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds