Wall clock time and date at job start Mon Mar 30 2020 01:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 120.00031 * 2 1 4 4 H 1.08006 * 120.00168 * 202.35395 * 3 2 1 5 5 C 1.38813 * 120.00406 * 22.35461 * 3 2 1 6 6 N 1.31618 * 119.99335 * 11.33737 * 5 3 2 7 7 Si 1.86793 * 120.00268 * 191.33729 * 5 3 2 8 8 H 1.48496 * 109.47291 * 89.99977 * 7 5 3 9 9 H 1.48499 * 109.47221 * 210.00126 * 7 5 3 10 10 H 1.48503 * 109.47171 * 329.99930 * 7 5 3 11 11 C 1.46498 * 119.99926 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.47408 * 269.99818 * 11 2 1 13 13 C 1.35384 * 126.72981 * 94.70877 * 12 11 2 14 14 N 1.36093 * 106.04871 * 180.26653 * 13 12 11 15 15 C 1.40311 * 125.94227 * 179.97438 * 14 13 12 16 16 C 1.38788 * 120.07157 * 359.74021 * 15 14 13 17 17 C 1.38133 * 119.95588 * 179.74620 * 16 15 14 18 18 C 1.38299 * 120.11428 * 0.54864 * 17 16 15 19 19 C 1.38243 * 120.14591 * 359.70427 * 18 17 16 20 20 C 1.38340 * 120.04057 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.05551 * 179.97438 * 20 19 18 22 22 N 1.28726 * 108.12166 * 0.02562 * 14 13 12 23 23 N 1.28610 * 110.23407 * 0.02562 * 22 14 13 24 24 H 1.09002 * 109.47133 * 274.21110 * 1 2 3 25 25 H 1.08997 * 109.46637 * 34.20909 * 1 2 3 26 26 H 1.08997 * 109.46916 * 154.20637 * 1 2 3 27 27 H 0.97007 * 119.99549 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.47012 * 149.99372 * 11 2 1 29 29 H 1.09004 * 109.46971 * 29.99800 * 11 2 1 30 30 H 1.08002 * 126.97609 * 0.24282 * 13 12 11 31 31 H 1.08001 * 120.02093 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.94614 * 180.27588 * 17 16 15 33 33 H 1.07998 * 119.92712 * 179.71915 * 18 17 16 34 34 H 1.08002 * 119.97388 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3557 5 6 1.5340 2.3429 0.4572 6 7 0.3843 2.2690 1.0937 7 14 2.3369 4.0047 0.1691 8 1 1.8682 4.5633 -1.1245 9 1 1.9685 4.9301 1.2705 10 1 3.8125 3.8417 0.1322 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4200 13 6 1.6892 -2.5519 2.1533 14 7 2.2944 -2.6436 3.3688 15 6 1.8519 -3.4167 4.4529 16 6 0.6952 -4.1754 4.3399 17 6 0.2646 -4.9396 5.4069 18 6 0.9779 -4.9413 6.5918 19 6 2.1277 -4.1832 6.7111 20 6 2.5677 -3.4198 5.6445 21 9 3.6911 -2.6784 5.7610 22 7 3.3429 -1.8970 3.3514 23 7 3.4619 -1.3240 2.2062 24 1 -0.3633 0.0755 1.0249 25 1 -0.3632 0.8499 -0.5778 26 1 -0.3633 -0.9253 -0.4472 27 1 -0.0458 3.0775 1.4136 28 1 3.1499 -1.1382 -0.5144 29 1 1.6084 -2.0281 -0.5147 30 1 0.7860 -3.0532 1.8379 31 1 0.1343 -4.1711 3.4170 32 1 -0.6330 -5.5334 5.3173 33 1 0.6360 -5.5364 7.4256 34 1 2.6828 -4.1869 7.6375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906267134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:33 Heat of formation + Delta-G solvation = 98.180859 kcal Electronic energy + Delta-G solvation = -20718.787347 eV Core-core repulsion = 17376.144461 eV Total energy + Delta-G solvation = -3342.642887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.02329 -44.31146 -40.11834 -37.61690 -35.65516 -33.77681 -32.20362 -31.55738 -30.83682 -28.19664 -27.69955 -25.32913 -24.45599 -23.28322 -22.56163 -21.63876 -19.46812 -18.76585 -18.26572 -17.67951 -17.29064 -16.84034 -16.52839 -16.27305 -15.92185 -15.50155 -15.30204 -15.08892 -14.82037 -14.32844 -13.78326 -13.66842 -13.20599 -13.00495 -12.87172 -12.82414 -12.56762 -12.35012 -12.20078 -12.07194 -12.00723 -11.84773 -11.62964 -10.66669 -10.23941 -10.05441 -9.59977 -8.86486 -7.85983 -5.32407 -0.50592 0.02447 0.96746 1.29577 1.41467 1.44107 1.52380 1.60870 2.49223 2.51138 2.97209 3.24581 3.36546 3.55174 3.75934 3.83636 4.03633 4.07990 4.20043 4.25623 4.36420 4.55727 4.81312 4.86835 4.89770 4.97528 5.08426 5.12663 5.26012 5.28385 5.37469 5.56488 5.63368 5.75610 5.88922 6.31595 7.14801 7.50891 7.84847 8.24247 9.17274 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.025586 B = 0.004588 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.093421 B = 6101.093193 C = 6380.721116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.604 5.604 3 C -0.252 4.252 4 H 0.066 0.934 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.964 3.036 8 H -0.276 1.276 9 H -0.298 1.298 10 H -0.275 1.275 11 C 0.222 3.778 12 C -0.028 4.028 13 C -0.042 4.042 14 N -0.249 5.249 15 C 0.054 3.946 16 C -0.094 4.094 17 C -0.094 4.094 18 C -0.070 4.070 19 C -0.137 4.137 20 C 0.074 3.926 21 F -0.142 7.142 22 N -0.123 5.123 23 N -0.293 5.293 24 H -0.005 1.005 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.246 0.754 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.233 0.767 31 H 0.164 0.836 32 H 0.186 0.814 33 H 0.186 0.814 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 -21.157 9.534 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.325 5.325 3 C -0.382 4.382 4 H 0.084 0.916 5 C -0.247 4.247 6 N -0.587 5.587 7 Si 0.792 3.208 8 H -0.202 1.202 9 H -0.225 1.225 10 H -0.200 1.200 11 C 0.093 3.907 12 C -0.169 4.169 13 C -0.191 4.191 14 N -0.037 5.037 15 C -0.038 4.038 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.088 4.088 19 C -0.156 4.156 20 C 0.053 3.947 21 F -0.121 7.121 22 N -0.100 5.100 23 N -0.160 5.160 24 H 0.014 0.986 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.125 0.875 30 H 0.249 0.751 31 H 0.181 0.819 32 H 0.204 0.796 33 H 0.203 0.797 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.611 -20.418 10.308 23.156 hybrid contribution 0.063 1.469 -0.354 1.513 sum -3.548 -18.948 9.955 21.696 Atomic orbital electron populations 1.20617 0.81708 0.97068 0.97359 1.44342 1.02590 1.01080 1.84503 1.19517 0.97955 0.86432 1.34332 0.91602 1.25742 0.98507 1.01790 0.98693 1.70232 1.19230 1.27210 1.41980 0.85306 0.78271 0.80094 0.77095 1.20216 1.22494 1.20043 1.19581 0.97255 0.87918 0.85897 1.24001 0.93016 0.97273 1.02573 1.24039 1.04002 1.06413 0.84602 1.44831 1.17894 1.30030 1.10945 1.18461 0.99780 0.99900 0.85662 1.21330 0.92061 0.94975 1.03028 1.21660 1.01221 0.97436 0.90937 1.21760 0.91747 0.95984 0.99347 1.21525 0.99577 0.96950 0.97524 1.18054 0.85420 0.96454 0.94792 1.91549 1.49212 1.75019 1.96301 1.78390 1.06296 1.07592 1.17762 1.74986 1.24094 1.18992 0.97933 0.98620 0.96045 0.93284 0.94520 0.92265 0.87469 0.75068 0.81850 0.79629 0.79672 0.81586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.53 9.01 127.77 1.15 9.68 16 2 N -0.60 -30.88 2.91 -731.30 -2.13 -33.00 16 3 C -0.25 -14.66 9.67 84.03 0.81 -13.84 16 4 H 0.07 3.84 7.84 -2.91 -0.02 3.82 16 5 C -0.05 -3.13 5.13 84.86 0.44 -2.70 16 6 N -0.94 -58.13 10.58 21.65 0.23 -57.90 16 7 Si 0.96 48.35 29.57 68.60 2.03 50.38 16 8 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 9 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 11 C 0.22 9.19 6.27 85.63 0.54 9.73 16 12 C -0.03 -1.23 6.83 41.60 0.28 -0.94 16 13 C -0.04 -1.48 10.85 83.37 0.90 -0.57 16 14 N -0.25 -9.38 3.56 -186.89 -0.66 -10.04 16 15 C 0.05 1.54 6.69 38.10 0.25 1.80 16 16 C -0.09 -1.63 9.46 22.38 0.21 -1.42 16 17 C -0.09 -0.89 10.04 22.26 0.22 -0.67 16 18 C -0.07 -0.64 10.04 22.29 0.22 -0.41 16 19 C -0.14 -2.27 10.02 22.30 0.22 -2.04 16 20 C 0.07 2.07 7.28 22.48 0.16 2.23 16 21 F -0.14 -5.11 15.58 44.97 0.70 -4.41 16 22 N -0.12 -5.79 11.40 37.02 0.42 -5.37 16 23 N -0.29 -14.81 12.39 -48.59 -0.60 -15.41 16 24 H 0.00 -0.25 7.42 -2.39 -0.02 -0.26 16 25 H 0.02 1.11 7.19 -2.39 -0.02 1.10 16 26 H 0.05 1.83 7.84 -2.39 -0.02 1.82 16 27 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 28 H 0.06 2.49 8.03 -2.39 -0.02 2.48 16 29 H 0.11 3.37 7.86 -2.38 -0.02 3.35 16 30 H 0.23 5.34 7.11 -2.91 -0.02 5.32 16 31 H 0.16 2.10 6.77 -2.91 -0.02 2.08 16 32 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 33 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 34 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -85.24 301.15 6.54 -78.70 By element: Atomic # 1 Polarization: -4.90 SS G_CDS: 1.13 Total: -3.78 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.43 Total: 0.83 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -2.74 Total: -121.73 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.70 Total: -4.41 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -85.24 6.54 -78.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906267134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.882 kcal (2) G-P(sol) polarization free energy of solvation -85.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds