Wall clock time and date at job start Mon Mar 30 2020 01:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86797 * 120.00259 * 2 1 4 4 H 1.48510 * 109.46884 * 269.99720 * 3 2 1 5 5 H 1.48506 * 109.47088 * 29.99050 * 3 2 1 6 6 H 1.48492 * 109.47367 * 149.99597 * 3 2 1 7 7 C 1.39890 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00205 * 195.52140 * 7 2 1 9 9 C 1.41162 * 120.00015 * 15.52824 * 7 2 1 10 10 C 1.40870 * 120.16319 * 204.69967 * 9 7 2 11 11 C 1.36372 * 119.82991 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.16632 * 0.27391 * 11 10 9 13 13 N 1.39242 * 119.83482 * 179.73081 * 12 11 10 14 14 C 1.34781 * 120.00196 * 35.97025 * 13 12 11 15 15 O 1.21575 * 119.99571 * 355.49288 * 14 13 12 16 16 N 1.34767 * 119.99940 * 175.49360 * 14 13 12 17 17 C 1.47069 * 136.05877 * 0.02562 * 16 14 13 18 18 C 1.53503 * 87.98277 * 207.08279 * 17 16 14 19 19 C 1.47068 * 136.05917 * 179.62947 * 16 14 13 20 20 H 1.09000 * 113.47353 * 267.69972 * 19 16 14 21 21 C 1.53008 * 113.46392 * 38.13400 * 19 16 14 22 22 O 1.42899 * 109.47206 * 275.49807 * 21 19 16 23 23 C 1.39481 * 120.33389 * 359.44672 * 12 11 10 24 24 C 1.36374 * 120.16575 * 0.55379 * 23 12 11 25 25 H 0.97000 * 119.99977 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.08589 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.91827 * 179.97438 * 11 10 9 28 28 H 0.97001 * 119.99834 * 215.97700 * 13 12 11 29 29 H 1.08995 * 113.46679 * 321.85889 * 17 16 14 30 30 H 1.08995 * 113.47129 * 92.30853 * 17 16 14 31 31 H 1.08999 * 114.20582 * 87.51915 * 18 17 16 32 32 H 1.09007 * 114.20599 * 220.33920 * 18 17 16 33 33 H 1.08996 * 109.47116 * 35.49544 * 21 19 16 34 34 H 1.08997 * 109.46972 * 155.49825 * 21 19 16 35 35 H 0.96694 * 114.00123 * 180.02562 * 22 21 19 36 36 H 1.07994 * 119.92217 * 180.28102 * 23 12 11 37 37 H 1.08001 * 120.08844 * 179.70270 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0463 -1.4002 5 1 1.4402 2.6527 0.6999 6 1 3.5403 1.4401 0.7001 7 6 2.0082 -1.2115 0.0005 8 1 3.0587 -1.2285 0.2508 9 6 1.3410 -2.4118 -0.3262 10 6 1.8293 -3.6449 0.1487 11 6 1.1797 -4.8004 -0.1715 12 6 0.0379 -4.7639 -0.9719 13 7 -0.6168 -5.9485 -1.2992 14 6 -0.6875 -6.9501 -0.4001 15 8 -0.1105 -6.8522 0.6655 16 7 -1.3979 -8.0600 -0.6824 17 6 -2.2044 -8.5419 -1.8139 18 6 -3.0037 -9.3883 -0.8134 19 6 -1.7020 -9.3254 0.0026 20 1 -1.0020 -10.1265 -0.2343 21 6 -1.9305 -9.1641 1.5069 22 8 -0.6726 -9.1825 2.1845 23 6 -0.4549 -3.5464 -1.4411 24 6 0.1840 -2.3826 -1.1292 25 1 -0.4850 0.8400 -0.0004 26 1 2.7162 -3.6752 0.7642 27 1 1.5530 -5.7466 0.1915 28 1 -1.0218 -6.0529 -2.1744 29 1 -2.7953 -7.7596 -2.2900 30 1 -1.6367 -9.1367 -2.5294 31 1 -3.8459 -8.8664 -0.3591 32 1 -3.2555 -10.3861 -1.1730 33 1 -2.4326 -8.2159 1.6986 34 1 -2.5508 -9.9836 1.8701 35 1 -0.7412 -9.0852 3.1441 36 1 -1.3420 -3.5254 -2.0566 37 1 -0.1959 -1.4409 -1.4972 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929427517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:04 Heat of formation + Delta-G solvation = -33.951865 kcal Electronic energy + Delta-G solvation = -20880.565109 eV Core-core repulsion = 17623.360072 eV Total energy + Delta-G solvation = -3257.205037 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68899 -40.10717 -38.61267 -37.23610 -36.08683 -34.70095 -31.65019 -31.34773 -30.02883 -29.25764 -26.67893 -23.95707 -23.77161 -23.00098 -22.15546 -20.40386 -19.29897 -19.03085 -18.19493 -17.88010 -17.08320 -17.00556 -16.45215 -15.90488 -15.60141 -15.41746 -14.85246 -14.56378 -14.18567 -14.00235 -13.98367 -13.68412 -13.44580 -13.19319 -12.84722 -12.75255 -12.62663 -12.48365 -12.28820 -11.77027 -11.65031 -11.44084 -11.15107 -10.95960 -10.84666 -10.60509 -9.67784 -9.46942 -8.81327 -8.57905 -6.27620 0.84811 1.14213 1.39459 1.46562 1.53329 1.61014 2.22578 2.26188 2.75746 3.04511 3.28875 3.60020 3.73175 4.00609 4.18485 4.31098 4.36077 4.40985 4.47459 4.53991 4.65537 4.68544 4.88799 4.97750 4.98997 5.14097 5.17386 5.32757 5.36373 5.46380 5.66378 5.89093 6.04766 6.15126 6.37483 6.42208 6.65867 6.88276 6.93523 7.00764 7.15863 7.74879 8.34766 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.037071 B = 0.003704 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.118626 B = 7558.426516 C = 7920.005296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.073 0.927 9 C 0.074 3.926 10 C -0.234 4.234 11 C -0.088 4.088 12 C 0.027 3.973 13 N -0.660 5.660 14 C 0.711 3.289 15 O -0.608 6.608 16 N -0.674 5.674 17 C 0.092 3.908 18 C -0.116 4.116 19 C 0.139 3.861 20 H 0.098 0.902 21 C 0.071 3.929 22 O -0.586 6.586 23 C -0.113 4.113 24 C -0.170 4.170 25 H 0.289 0.711 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.408 0.592 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.025 0.975 34 H 0.091 0.909 35 H 0.387 0.613 36 H 0.122 0.878 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 -15.917 -4.719 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.526 4.526 8 H 0.092 0.908 9 C 0.071 3.929 10 C -0.254 4.254 11 C -0.109 4.109 12 C -0.067 4.067 13 N -0.307 5.307 14 C 0.415 3.585 15 O -0.487 6.487 16 N -0.415 5.415 17 C -0.030 4.030 18 C -0.154 4.154 19 C 0.035 3.965 20 H 0.115 0.885 21 C -0.007 4.007 22 O -0.393 6.393 23 C -0.133 4.133 24 C -0.190 4.190 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.244 0.756 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.043 0.957 34 H 0.108 0.892 35 H 0.235 0.765 36 H 0.140 0.860 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.432 -15.605 -4.488 18.778 hybrid contribution 0.280 0.909 0.557 1.102 sum -9.152 -14.697 -3.931 17.754 Atomic orbital electron populations 1.69882 1.08910 1.30561 1.35894 1.26773 0.95592 1.04476 0.91182 0.85130 0.78831 0.75609 0.79651 1.18290 1.19127 1.18570 1.19796 0.97518 0.92254 1.43007 0.90849 1.17981 0.92647 0.92665 0.89601 1.20780 1.03798 0.93176 1.07678 1.20445 0.94447 0.97133 0.98839 1.17042 0.95970 0.84650 1.09086 1.41847 1.58838 1.13501 1.16557 1.15687 0.79066 0.80212 0.83547 1.90911 1.50640 1.80738 1.26447 1.49125 1.53260 1.15495 1.23588 1.23256 0.91389 0.97513 0.90830 1.23468 0.94128 1.03064 0.94713 1.23040 0.97181 0.84193 0.92060 0.88456 1.22502 0.85767 0.99974 0.92439 1.86557 1.31195 1.96641 1.24927 1.20469 0.99501 0.90831 1.02506 1.20961 0.99242 0.96977 1.01771 0.90024 0.89012 0.88331 0.75593 0.89324 0.87898 0.88118 0.84945 0.95665 0.89150 0.76481 0.85963 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.06 10.82 21.82 0.24 -43.82 16 2 C 0.03 1.77 5.18 85.23 0.44 2.21 16 3 Si 0.99 39.14 29.59 68.60 2.03 41.17 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.50 -28.11 9.05 23.39 0.21 -27.90 16 8 H 0.07 4.04 7.89 -2.91 -0.02 4.02 16 9 C 0.07 4.25 5.58 -21.27 -0.12 4.13 16 10 C -0.23 -13.12 9.74 22.48 0.22 -12.90 16 11 C -0.09 -4.70 8.61 22.13 0.19 -4.51 16 12 C 0.03 1.27 6.29 38.56 0.24 1.51 16 13 N -0.66 -25.35 5.31 -316.79 -1.68 -27.03 16 14 C 0.71 28.37 8.53 179.06 1.53 29.89 16 15 O -0.61 -30.38 13.21 4.11 0.05 -30.33 16 16 N -0.67 -18.62 3.56 -851.30 -3.03 -21.65 16 17 C 0.09 1.34 8.28 83.18 0.69 2.03 16 18 C -0.12 -1.20 8.04 31.02 0.25 -0.95 16 19 C 0.14 2.88 4.33 41.88 0.18 3.06 16 20 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 21 C 0.07 1.65 6.50 71.98 0.47 2.12 16 22 O -0.59 -17.60 12.79 -140.92 -1.80 -19.40 16 23 C -0.11 -5.37 9.90 22.13 0.22 -5.15 16 24 C -0.17 -9.20 8.64 22.48 0.19 -9.00 16 25 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 26 H 0.09 4.98 8.06 -2.91 -0.02 4.95 16 27 H 0.10 5.38 6.27 -2.91 -0.02 5.36 16 28 H 0.41 12.17 8.54 -92.71 -0.79 11.38 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.02 8.13 -2.39 -0.02 1.00 16 32 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.39 8.54 9.12 -74.06 -0.68 7.87 16 36 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.12 6.38 6.08 -2.91 -0.02 6.36 16 Total: -1.00 -79.27 314.56 0.16 -79.11 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.36 Total: 37.40 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.71 Total: -15.46 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -4.48 Total: -92.50 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -1.75 Total: -49.72 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -79.27 0.16 -79.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929427517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.160 kcal (2) G-P(sol) polarization free energy of solvation -79.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds