Wall clock time and date at job start Mon Mar 30 2020 01:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00389 * 2 1 4 4 H 1.48496 * 109.47589 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46936 * 300.00072 * 3 2 1 6 6 H 1.48502 * 109.47385 * 59.99551 * 3 2 1 7 7 C 1.37884 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00069 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47547 * 300.00626 * 9 7 2 11 11 O 1.42906 * 109.46707 * 60.00483 * 9 7 2 12 12 C 1.52999 * 109.47089 * 180.02562 * 9 7 2 13 13 N 1.46901 * 109.46939 * 175.46232 * 12 9 7 14 14 C 1.46302 * 111.00166 * 294.29017 * 13 12 9 15 15 C 1.52095 * 111.63259 * 189.57558 * 14 13 12 16 16 N 1.46307 * 111.01934 * 315.02345 * 15 14 13 17 17 C 1.35173 * 119.20289 * 76.86509 * 16 15 14 18 18 O 1.21593 * 121.04991 * 174.99187 * 17 16 15 19 19 C 1.47485 * 117.89904 * 354.97058 * 17 16 15 20 20 C 1.39439 * 120.89878 * 131.69996 * 19 17 16 21 21 C 1.37864 * 119.72086 * 181.12088 * 20 19 17 22 22 C 1.38615 * 120.39152 * 0.08724 * 21 20 19 23 23 C 1.38044 * 120.52489 * 359.45358 * 22 21 20 24 24 C 1.38702 * 111.00192 * 168.12140 * 13 12 9 25 25 H 0.96992 * 120.00022 * 0.02562 * 1 2 3 26 26 H 0.96700 * 113.99995 * 61.84191 * 11 9 7 27 27 H 1.08994 * 109.47072 * 295.45836 * 12 9 7 28 28 H 1.09002 * 109.47432 * 55.46638 * 12 9 7 29 29 H 1.09002 * 109.04277 * 310.12846 * 14 13 12 30 30 H 1.08993 * 109.04997 * 69.01490 * 14 13 12 31 31 H 1.08998 * 109.17309 * 75.42441 * 15 14 13 32 32 H 1.09007 * 109.16798 * 194.68252 * 15 14 13 33 33 H 0.96994 * 120.40544 * 256.85139 * 16 15 14 34 34 H 1.07998 * 120.14007 * 1.09886 * 20 19 17 35 35 H 1.08008 * 119.80264 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.73961 * 179.43851 * 22 21 20 37 37 H 1.08002 * 120.04581 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6246 -2.5564 0.8919 11 8 0.4291 -2.5756 -1.1648 12 6 2.2453 -3.6621 0.0027 13 7 1.5140 -4.9314 0.1135 14 6 0.8418 -5.0380 1.4085 15 6 0.2780 -6.4324 1.6345 16 7 -0.4125 -6.9192 0.4400 17 6 0.3164 -7.3684 -0.6060 18 8 -0.2207 -7.8636 -1.5781 19 6 1.7836 -7.2386 -0.5313 20 6 2.6141 -8.3178 -0.8311 21 6 3.9818 -8.1762 -0.7308 22 6 4.5345 -6.9690 -0.3325 23 6 3.7250 -5.8893 -0.0416 24 6 2.3469 -6.0093 -0.1476 25 1 -0.4850 0.8400 -0.0004 26 1 0.9232 -2.5592 -1.9959 27 1 2.8171 -3.6521 -0.9251 28 1 2.9242 -3.5590 0.8492 29 1 1.5561 -4.8105 2.1998 30 1 0.0276 -4.3144 1.4473 31 1 1.0936 -7.1130 1.8788 32 1 -0.4254 -6.4035 2.4667 33 1 -1.3816 -6.9198 0.3992 34 1 2.1878 -9.2607 -1.1402 35 1 4.6264 -9.0111 -0.9631 36 1 5.6069 -6.8725 -0.2487 37 1 4.1639 -4.9522 0.2677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930175262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:15 Heat of formation + Delta-G solvation = -42.935913 kcal Electronic energy + Delta-G solvation = -21818.120666 eV Core-core repulsion = 18560.526051 eV Total energy + Delta-G solvation = -3257.594615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.81063 -38.29442 -37.22881 -35.56957 -34.19051 -32.15587 -31.04740 -30.37453 -29.22514 -27.18076 -24.72526 -24.28631 -22.65688 -21.53620 -20.34851 -19.64412 -17.29562 -17.26339 -16.76831 -16.20147 -15.82631 -14.99986 -14.66376 -14.57427 -14.43510 -13.98762 -13.89160 -13.68760 -13.55979 -13.00783 -12.55780 -12.47908 -12.17102 -11.80962 -11.70167 -11.20373 -11.09567 -11.01191 -10.81710 -10.61418 -10.13556 -9.89871 -9.35571 -9.02905 -8.95167 -8.87747 -8.63471 -8.20690 -7.62677 -6.07802 -4.26961 1.08576 1.41724 2.92278 3.22100 3.30890 3.33154 3.42097 3.78485 3.98576 4.35613 4.68409 4.89778 4.95896 5.00576 5.03591 5.20209 5.34987 5.38790 5.45998 5.64091 5.70795 5.86591 5.92469 5.97953 6.12952 6.28057 6.30956 6.45208 6.50788 6.60752 6.82748 6.95760 7.24331 7.31087 7.53158 7.67725 7.77229 8.09477 8.40555 8.76031 9.37501 9.53422 10.96457 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.005295 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.894452 B = 5287.197576 C = 5923.417165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.081 3.919 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.576 4.576 8 H 0.056 0.944 9 C 0.237 3.763 10 H 0.057 0.943 11 O -0.554 6.554 12 C 0.031 3.969 13 N -0.492 5.492 14 C 0.044 3.956 15 C 0.110 3.890 16 N -0.715 5.715 17 C 0.586 3.414 18 O -0.542 6.542 19 C -0.151 4.151 20 C -0.055 4.055 21 C -0.155 4.155 22 C -0.078 4.078 23 C -0.173 4.173 24 C 0.155 3.845 25 H 0.261 0.739 26 H 0.344 0.656 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.404 0.596 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 -14.107 4.808 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.125 4.125 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.614 4.614 8 H 0.074 0.926 9 C 0.179 3.821 10 H 0.074 0.926 11 O -0.356 6.356 12 C -0.095 4.095 13 N -0.207 5.207 14 C -0.082 4.082 15 C -0.016 4.016 16 N -0.367 5.367 17 C 0.374 3.626 18 O -0.419 6.419 19 C -0.156 4.156 20 C -0.075 4.075 21 C -0.174 4.174 22 C -0.097 4.097 23 C -0.194 4.194 24 C 0.056 3.944 25 H 0.071 0.929 26 H 0.187 0.813 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.240 0.760 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.765 -14.220 4.478 15.651 hybrid contribution 1.276 1.287 0.143 1.818 sum 6.041 -12.933 4.621 15.003 Atomic orbital electron populations 1.70082 1.05946 1.26446 1.46732 1.25011 0.94679 0.99136 0.93706 0.86608 0.80167 0.83782 0.77762 1.19718 1.20808 1.20858 1.21625 0.93154 0.91408 1.55255 0.92596 1.19366 0.87701 0.88310 0.86752 0.92568 1.86584 1.37489 1.96507 1.15029 1.23357 0.97470 0.88102 1.00615 1.58167 1.30233 1.01864 1.30412 1.22425 0.99557 0.98175 0.88078 1.21413 0.97843 0.94643 0.87693 1.45690 1.09776 1.64885 1.16331 1.18153 0.86888 0.75854 0.81749 1.90792 1.73856 1.45140 1.32154 1.19705 0.93350 0.95025 1.07507 1.20956 0.93100 0.97544 0.95868 1.20965 0.94573 0.98007 1.03869 1.21155 0.99632 0.92565 0.96372 1.21496 0.93147 1.00266 1.04491 1.19004 0.90860 0.90366 0.94179 0.92949 0.81291 0.91045 0.93990 0.92999 0.88478 0.91132 0.88740 0.76001 0.85474 0.85831 0.85951 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.77 12.84 55.43 0.71 -24.06 16 2 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.58 -15.15 8.77 -34.44 -0.30 -15.46 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.24 5.70 2.76 -27.88 -0.08 5.62 16 10 H 0.06 1.46 6.53 -51.93 -0.34 1.12 16 11 O -0.55 -14.32 12.67 -35.23 -0.45 -14.77 16 12 C 0.03 0.59 3.27 -3.82 -0.01 0.58 16 13 N -0.49 -8.58 4.00 -171.97 -0.69 -9.27 16 14 C 0.04 0.65 5.13 -4.61 -0.02 0.62 16 15 C 0.11 1.28 6.23 -4.61 -0.03 1.25 16 16 N -0.71 -10.00 5.42 -61.87 -0.34 -10.34 16 17 C 0.59 10.02 7.24 -12.31 -0.09 9.93 16 18 O -0.54 -11.01 17.94 5.28 0.09 -10.92 16 19 C -0.15 -2.37 4.73 -104.81 -0.50 -2.86 16 20 C -0.06 -0.74 9.78 -39.27 -0.38 -1.12 16 21 C -0.16 -1.76 10.02 -39.58 -0.40 -2.16 16 22 C -0.08 -0.91 10.02 -39.51 -0.40 -1.31 16 23 C -0.17 -2.42 8.86 -39.47 -0.35 -2.77 16 24 C 0.16 2.47 4.83 -83.69 -0.40 2.06 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.34 8.13 9.04 45.56 0.41 8.54 16 27 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 28 H 0.04 0.77 7.16 -51.93 -0.37 0.39 16 29 H 0.05 0.70 7.96 -51.93 -0.41 0.29 16 30 H 0.10 1.62 6.78 -51.93 -0.35 1.27 16 31 H 0.07 0.78 7.25 -51.93 -0.38 0.40 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 5.10 8.95 -40.82 -0.37 4.73 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.13 1.80 6.28 -52.49 -0.33 1.47 16 LS Contribution 306.74 15.07 4.62 4.62 Total: -1.00 -32.93 306.74 -7.88 -40.82 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -3.77 Total: 11.82 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -3.06 Total: -3.49 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.31 Total: -43.66 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.35 Total: -25.69 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.93 -7.88 -40.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930175262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.121 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds