Wall clock time and date at job start Mon Mar 30 2020 01:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00389 * 2 1 4 4 H 1.48496 * 109.47589 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46936 * 300.00072 * 3 2 1 6 6 H 1.48502 * 109.47385 * 59.99551 * 3 2 1 7 7 C 1.37884 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00069 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47547 * 300.00626 * 9 7 2 11 11 O 1.42906 * 109.46707 * 60.00483 * 9 7 2 12 12 C 1.52999 * 109.47089 * 180.02562 * 9 7 2 13 13 N 1.46901 * 109.46939 * 175.46232 * 12 9 7 14 14 C 1.46302 * 111.00166 * 294.29017 * 13 12 9 15 15 C 1.52095 * 111.63259 * 189.57558 * 14 13 12 16 16 N 1.46307 * 111.01934 * 315.02345 * 15 14 13 17 17 C 1.35173 * 119.20289 * 76.86509 * 16 15 14 18 18 O 1.21593 * 121.04991 * 174.99187 * 17 16 15 19 19 C 1.47485 * 117.89904 * 354.97058 * 17 16 15 20 20 C 1.39439 * 120.89878 * 131.69996 * 19 17 16 21 21 C 1.37864 * 119.72086 * 181.12088 * 20 19 17 22 22 C 1.38615 * 120.39152 * 0.08724 * 21 20 19 23 23 C 1.38044 * 120.52489 * 359.45358 * 22 21 20 24 24 C 1.38702 * 111.00192 * 168.12140 * 13 12 9 25 25 H 0.96992 * 120.00022 * 0.02562 * 1 2 3 26 26 H 0.96700 * 113.99995 * 61.84191 * 11 9 7 27 27 H 1.08994 * 109.47072 * 295.45836 * 12 9 7 28 28 H 1.09002 * 109.47432 * 55.46638 * 12 9 7 29 29 H 1.09002 * 109.04277 * 310.12846 * 14 13 12 30 30 H 1.08993 * 109.04997 * 69.01490 * 14 13 12 31 31 H 1.08998 * 109.17309 * 75.42441 * 15 14 13 32 32 H 1.09007 * 109.16798 * 194.68252 * 15 14 13 33 33 H 0.96994 * 120.40544 * 256.85139 * 16 15 14 34 34 H 1.07998 * 120.14007 * 1.09886 * 20 19 17 35 35 H 1.08008 * 119.80264 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.73961 * 179.43851 * 22 21 20 37 37 H 1.08002 * 120.04581 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6246 -2.5564 0.8919 11 8 0.4291 -2.5756 -1.1648 12 6 2.2453 -3.6621 0.0027 13 7 1.5140 -4.9314 0.1135 14 6 0.8418 -5.0380 1.4085 15 6 0.2780 -6.4324 1.6345 16 7 -0.4125 -6.9192 0.4400 17 6 0.3164 -7.3684 -0.6060 18 8 -0.2207 -7.8636 -1.5781 19 6 1.7836 -7.2386 -0.5313 20 6 2.6141 -8.3178 -0.8311 21 6 3.9818 -8.1762 -0.7308 22 6 4.5345 -6.9690 -0.3325 23 6 3.7250 -5.8893 -0.0416 24 6 2.3469 -6.0093 -0.1476 25 1 -0.4850 0.8400 -0.0004 26 1 0.9232 -2.5592 -1.9959 27 1 2.8171 -3.6521 -0.9251 28 1 2.9242 -3.5590 0.8492 29 1 1.5561 -4.8105 2.1998 30 1 0.0276 -4.3144 1.4473 31 1 1.0936 -7.1130 1.8788 32 1 -0.4254 -6.4035 2.4667 33 1 -1.3816 -6.9198 0.3992 34 1 2.1878 -9.2607 -1.1402 35 1 4.6264 -9.0111 -0.9631 36 1 5.6069 -6.8725 -0.2487 37 1 4.1639 -4.9522 0.2677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930175262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:14 Heat of formation + Delta-G solvation = -69.109994 kcal Electronic energy + Delta-G solvation = -21819.255659 eV Core-core repulsion = 18560.526051 eV Total energy + Delta-G solvation = -3258.729608 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98908 -39.62370 -38.46135 -37.21405 -35.58746 -34.24062 -32.10874 -31.48694 -30.79338 -28.67602 -26.35612 -25.49264 -23.76385 -23.10590 -21.50782 -21.00158 -19.15492 -18.47436 -17.89069 -17.47772 -17.07347 -16.65362 -16.45774 -15.93941 -15.77230 -15.50983 -15.14832 -14.95268 -14.88091 -14.41544 -14.08815 -13.60069 -13.39058 -13.15009 -12.98410 -12.84958 -12.79021 -12.70768 -12.20454 -12.10148 -11.90016 -11.22702 -11.05983 -10.71975 -10.35376 -10.16394 -10.14264 -9.92354 -8.85284 -8.14654 -6.40433 0.02230 0.39059 1.39524 1.41784 1.52932 1.69035 2.30845 2.37678 2.70802 2.80802 3.12572 3.58695 3.82204 3.95881 3.99111 4.13691 4.19384 4.29542 4.41804 4.45857 4.46668 4.58046 4.65262 4.71310 4.86340 4.91992 4.97364 5.27301 5.34688 5.52681 5.57845 5.71396 5.77830 5.87272 5.96443 6.11009 6.14178 6.40966 6.72040 7.17993 7.33190 7.54811 8.90186 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.005295 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.894452 B = 5287.197576 C = 5923.417165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.585 4.585 8 H 0.062 0.938 9 C 0.236 3.764 10 H 0.030 0.970 11 O -0.575 6.575 12 C 0.054 3.946 13 N -0.510 5.510 14 C 0.041 3.959 15 C 0.115 3.885 16 N -0.709 5.709 17 C 0.576 3.424 18 O -0.588 6.588 19 C -0.170 4.170 20 C -0.061 4.061 21 C -0.141 4.141 22 C -0.068 4.068 23 C -0.182 4.182 24 C 0.137 3.863 25 H 0.261 0.739 26 H 0.350 0.650 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.408 0.592 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.511 -15.072 5.514 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.175 4.175 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.623 4.623 8 H 0.080 0.920 9 C 0.178 3.822 10 H 0.048 0.952 11 O -0.378 6.378 12 C -0.073 4.073 13 N -0.226 5.226 14 C -0.085 4.085 15 C -0.010 4.010 16 N -0.359 5.359 17 C 0.365 3.635 18 O -0.469 6.469 19 C -0.175 4.175 20 C -0.080 4.080 21 C -0.160 4.160 22 C -0.087 4.087 23 C -0.202 4.202 24 C 0.038 3.962 25 H 0.069 0.931 26 H 0.194 0.806 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.149 0.851 33 H 0.245 0.755 34 H 0.154 0.846 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.364 -15.190 5.222 17.670 hybrid contribution 0.510 1.516 -0.059 1.600 sum 7.874 -13.674 5.164 16.603 Atomic orbital electron populations 1.70224 1.07718 1.27277 1.48437 1.25871 0.95404 1.02876 0.93372 0.85519 0.79267 0.79244 0.77578 1.18483 1.20940 1.20415 1.22034 0.93611 0.92509 1.54181 0.91956 1.19278 0.87844 0.89875 0.85216 0.95178 1.86538 1.38668 1.96711 1.15854 1.22865 0.95980 0.87661 1.00802 1.58041 1.30919 1.01582 1.32028 1.22485 0.98897 0.99402 0.87681 1.21576 0.99009 0.92812 0.87578 1.45762 1.10166 1.63566 1.16406 1.18577 0.87914 0.75381 0.81619 1.90751 1.74788 1.47481 1.33882 1.19726 0.92668 0.95901 1.09228 1.21206 0.94003 0.97263 0.95502 1.21378 0.93962 0.98957 1.01659 1.21546 1.01127 0.91619 0.94375 1.21600 0.92447 1.01251 1.04936 1.19012 0.91555 0.89854 0.95764 0.93051 0.80601 0.91437 0.92971 0.91700 0.91295 0.89720 0.85102 0.75538 0.84613 0.82186 0.82558 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.17 12.84 21.45 0.28 -52.89 16 2 C 0.03 1.49 5.40 84.66 0.46 1.95 16 3 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.59 -30.96 8.77 25.60 0.22 -30.73 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.24 11.63 2.76 29.85 0.08 11.71 16 10 H 0.03 1.64 6.53 -2.39 -0.02 1.63 16 11 O -0.57 -30.71 12.67 -148.98 -1.89 -32.60 16 12 C 0.05 2.07 3.27 86.30 0.28 2.35 16 13 N -0.51 -17.85 4.00 -698.00 -2.79 -20.64 16 14 C 0.04 1.22 5.13 86.12 0.44 1.66 16 15 C 0.11 2.55 6.23 86.12 0.54 3.09 16 16 N -0.71 -19.76 5.42 -467.68 -2.53 -22.30 16 17 C 0.58 19.86 7.24 86.62 0.63 20.49 16 18 O -0.59 -24.52 17.94 -4.01 -0.07 -24.59 16 19 C -0.17 -5.19 4.73 -19.99 -0.09 -5.29 16 20 C -0.06 -1.48 9.78 22.47 0.22 -1.26 16 21 C -0.14 -2.64 10.02 22.27 0.22 -2.41 16 22 C -0.07 -1.32 10.02 22.31 0.22 -1.10 16 23 C -0.18 -4.66 8.86 22.34 0.20 -4.47 16 24 C 0.14 4.21 4.83 38.74 0.19 4.40 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.35 17.11 9.04 -74.06 -0.67 16.45 16 27 H 0.07 2.63 7.66 -2.39 -0.02 2.61 16 28 H 0.05 1.87 7.16 -2.39 -0.02 1.86 16 29 H 0.06 1.72 7.96 -2.39 -0.02 1.70 16 30 H 0.07 2.41 6.78 -2.39 -0.02 2.39 16 31 H 0.08 1.70 7.25 -2.39 -0.02 1.68 16 32 H 0.13 1.94 8.14 -2.38 -0.02 1.93 16 33 H 0.41 10.40 8.95 -92.71 -0.83 9.57 16 34 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.13 3.33 6.28 -2.91 -0.02 3.32 16 Total: -1.00 -72.93 306.74 -1.76 -74.69 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.38 Total: 33.56 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 3.61 Total: 0.39 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -5.05 Total: -95.83 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -1.96 Total: -57.19 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -72.93 -1.76 -74.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930175262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.575 kcal (2) G-P(sol) polarization free energy of solvation -72.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds