Wall clock time and date at job start Mon Mar 30 2020 02:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00290 * 2 1 4 4 H 1.48502 * 109.46961 * 269.99946 * 3 2 1 5 5 H 1.48501 * 109.46952 * 29.99258 * 3 2 1 6 6 H 1.48493 * 109.47581 * 149.99398 * 3 2 1 7 7 C 1.37880 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99534 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47144 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47152 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99649 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00336 * 0.02562 * 12 11 10 14 14 C 1.47524 * 119.99599 * 180.02562 * 12 11 10 15 15 C 1.39986 * 120.59850 * 0.02562 * 14 12 11 16 16 C 1.38344 * 118.34816 * 179.97438 * 15 14 12 17 17 C 1.38356 * 119.46041 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.40672 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.50094 * 343.75348 * 18 17 16 20 20 C 1.52990 * 117.50292 * 275.08972 * 18 17 16 21 21 N 1.31883 * 121.18175 * 359.74853 * 17 16 15 22 22 C 1.32241 * 121.80116 * 0.52529 * 21 17 16 23 23 O 1.35422 * 119.79870 * 179.75340 * 22 21 17 24 24 H 0.97002 * 119.99666 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47006 * 59.99664 * 9 7 2 26 26 H 1.08999 * 109.46803 * 299.99789 * 9 7 2 27 27 H 1.09004 * 109.46942 * 59.99746 * 10 9 7 28 28 H 1.09008 * 109.46873 * 300.00166 * 10 9 7 29 29 H 0.96999 * 120.00144 * 359.97438 * 11 10 9 30 30 H 1.08002 * 120.82619 * 0.02562 * 15 14 12 31 31 H 1.08002 * 120.26943 * 179.97438 * 16 15 14 32 32 H 1.09000 * 115.54354 * 129.42012 * 18 17 16 33 33 H 1.08997 * 117.49888 * 359.97438 * 19 18 17 34 34 H 1.09003 * 117.50004 * 145.01818 * 19 18 17 35 35 H 1.08996 * 117.50557 * 214.98205 * 20 18 17 36 36 H 1.08998 * 117.50014 * 359.97438 * 20 18 17 37 37 H 0.96700 * 114.00112 * 269.72522 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1865 -6.0980 -0.0007 13 8 3.4023 -6.0981 -0.0003 14 6 1.4488 -7.3756 -0.0019 15 6 0.0490 -7.3901 -0.0029 16 6 -0.5952 -8.6144 -0.0046 17 6 0.1540 -9.7776 -0.0057 18 6 -0.5489 -11.1105 -0.0081 19 6 -2.0312 -11.1282 0.3705 20 6 -0.9859 -11.6812 1.3425 21 7 1.4723 -9.7406 -0.0102 22 6 2.1375 -8.5977 -0.0035 23 8 3.4917 -8.6071 -0.0034 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6240 -2.5566 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.5426 -4.9308 0.0000 30 1 -0.5140 -6.4685 -0.0033 31 1 -1.6742 -8.6618 -0.0050 32 1 -0.2153 -11.8165 -0.7686 33 1 -2.4979 -10.1757 0.6218 34 1 -2.6727 -11.8461 -0.1406 35 1 -0.9402 -12.7626 1.4705 36 1 -0.7646 -11.0927 2.2329 37 1 3.8849 -8.6107 0.8800 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935340396.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:48 Heat of formation + Delta-G solvation = -22.809733 kcal Electronic energy + Delta-G solvation = -20171.080838 eV Core-core repulsion = 16914.358960 eV Total energy + Delta-G solvation = -3256.721878 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.01691 -39.01808 -37.83888 -36.44383 -34.88242 -33.22793 -32.55815 -30.54523 -29.41047 -25.84551 -24.55376 -23.66231 -22.51878 -21.75573 -21.10029 -20.31062 -18.57032 -17.59197 -17.26555 -16.38642 -16.35467 -15.44566 -15.26671 -14.93283 -14.76212 -14.52879 -14.04072 -13.66433 -13.35355 -12.98023 -12.72646 -12.36153 -12.31669 -11.84927 -11.75642 -11.24367 -11.08243 -10.99331 -10.83556 -10.67253 -10.38614 -10.07705 -10.03775 -9.75426 -9.44133 -9.20837 -8.98226 -8.57880 -8.39208 -6.12865 -4.15690 0.43049 0.91409 2.86419 3.15070 3.27655 3.33786 3.37501 3.47433 3.53927 3.79453 4.10224 4.38861 4.41168 4.48621 4.56993 4.72401 4.75724 4.91968 5.17556 5.23835 5.24484 5.33150 5.44540 5.59526 5.68970 5.73933 5.85806 6.16302 6.29667 6.30334 6.68120 6.81581 7.42203 7.47164 7.56306 7.68956 7.85085 7.90837 8.23401 8.53914 8.90135 9.49401 10.98780 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.003145 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.737718 B = 8902.267245 C = 9695.727953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.122 3.878 11 N -0.717 5.717 12 C 0.552 3.448 13 O -0.528 6.528 14 C -0.202 4.202 15 C -0.026 4.026 16 C -0.189 4.189 17 C 0.200 3.800 18 C -0.113 4.113 19 C -0.171 4.171 20 C -0.160 4.160 21 N -0.505 5.505 22 C 0.372 3.628 23 O -0.458 6.458 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.395 0.605 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 -21.605 2.351 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.367 5.367 12 C 0.337 3.663 13 O -0.406 6.406 14 C -0.208 4.208 15 C -0.052 4.052 16 C -0.209 4.209 17 C 0.062 3.938 18 C -0.132 4.132 19 C -0.208 4.208 20 C -0.197 4.197 21 N -0.224 5.224 22 C 0.192 3.808 23 O -0.265 6.265 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.229 0.771 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.143 0.857 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -4.429 -22.166 1.751 22.672 hybrid contribution -0.424 1.744 0.386 1.836 sum -4.853 -20.421 2.137 21.099 Atomic orbital electron populations 1.69951 1.06101 1.26921 1.50348 1.24995 0.94904 0.99443 0.94931 0.86501 0.79839 0.82928 0.78237 1.20529 1.21153 1.19708 1.21043 0.93283 0.90325 1.51417 0.92189 1.19331 0.94207 0.91122 0.97853 1.21777 0.96082 0.81071 1.01046 1.46258 1.10415 1.06433 1.73594 1.17822 0.87350 0.83208 0.77921 1.90789 1.12875 1.87324 1.49587 1.21331 0.94652 0.95320 1.09532 1.21814 0.92696 0.99111 0.91561 1.21887 1.01990 0.92080 1.04935 1.20232 0.87776 0.93892 0.91886 1.20837 0.96287 0.94948 1.01116 1.23148 0.90818 1.03617 1.03242 1.22995 1.02385 1.01376 0.92988 1.66960 1.09678 1.30030 1.15690 1.19100 0.85020 0.86068 0.90644 1.84719 1.12789 1.95311 1.33722 0.92818 0.95916 0.95913 0.92305 0.92292 0.77060 0.83513 0.83657 0.85724 0.87965 0.87797 0.87971 0.88512 0.73562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.57 5.61 -4.04 -0.02 2.54 16 11 N -0.72 -12.44 5.51 -61.35 -0.34 -12.78 16 12 C 0.55 9.71 7.77 -12.47 -0.10 9.61 16 13 O -0.53 -10.96 15.19 -16.48 -0.25 -11.21 16 14 C -0.20 -2.91 5.90 -104.69 -0.62 -3.53 16 15 C -0.03 -0.29 9.64 -38.89 -0.37 -0.66 16 16 C -0.19 -1.83 9.34 -39.50 -0.37 -2.20 16 17 C 0.20 2.20 6.46 -82.53 -0.53 1.66 16 18 C -0.11 -0.92 6.21 -91.78 -0.57 -1.49 16 19 C -0.17 -0.97 9.79 -26.70 -0.26 -1.23 16 20 C -0.16 -1.05 10.24 -26.70 -0.27 -1.32 16 21 N -0.50 -6.86 10.28 -9.21 -0.09 -6.95 16 22 C 0.37 5.47 7.77 -16.61 -0.13 5.34 16 23 O -0.46 -6.80 11.66 -39.73 -0.46 -7.27 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 29 H 0.39 5.80 6.57 -40.82 -0.27 5.53 16 30 H 0.15 1.32 6.52 -52.49 -0.34 0.98 16 31 H 0.15 0.97 6.22 -52.49 -0.33 0.64 16 32 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.52 6.37 -51.93 -0.33 0.19 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.40 4.28 9.06 45.56 0.41 4.69 16 LS Contribution 321.08 15.07 4.84 4.84 Total: -1.00 -33.61 321.08 -8.17 -41.78 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.78 Total: 4.68 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -3.80 Total: -4.21 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.30 Total: -44.81 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.71 Total: -18.47 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.61 -8.17 -41.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935340396.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.968 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds