Wall clock time and date at job start Mon Mar 30 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00290 * 2 1 4 4 H 1.48502 * 109.46961 * 269.99946 * 3 2 1 5 5 H 1.48501 * 109.46952 * 29.99258 * 3 2 1 6 6 H 1.48493 * 109.47581 * 149.99398 * 3 2 1 7 7 C 1.37880 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99534 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47144 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47152 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99649 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00336 * 0.02562 * 12 11 10 14 14 C 1.47524 * 119.99599 * 180.02562 * 12 11 10 15 15 C 1.39986 * 120.59850 * 0.02562 * 14 12 11 16 16 C 1.38344 * 118.34816 * 179.97438 * 15 14 12 17 17 C 1.38356 * 119.46041 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.40672 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.50094 * 343.75348 * 18 17 16 20 20 C 1.52990 * 117.50292 * 275.08972 * 18 17 16 21 21 N 1.31883 * 121.18175 * 359.74853 * 17 16 15 22 22 C 1.32241 * 121.80116 * 0.52529 * 21 17 16 23 23 O 1.35422 * 119.79870 * 179.75340 * 22 21 17 24 24 H 0.97002 * 119.99666 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47006 * 59.99664 * 9 7 2 26 26 H 1.08999 * 109.46803 * 299.99789 * 9 7 2 27 27 H 1.09004 * 109.46942 * 59.99746 * 10 9 7 28 28 H 1.09008 * 109.46873 * 300.00166 * 10 9 7 29 29 H 0.96999 * 120.00144 * 359.97438 * 11 10 9 30 30 H 1.08002 * 120.82619 * 0.02562 * 15 14 12 31 31 H 1.08002 * 120.26943 * 179.97438 * 16 15 14 32 32 H 1.09000 * 115.54354 * 129.42012 * 18 17 16 33 33 H 1.08997 * 117.49888 * 359.97438 * 19 18 17 34 34 H 1.09003 * 117.50004 * 145.01818 * 19 18 17 35 35 H 1.08996 * 117.50557 * 214.98205 * 20 18 17 36 36 H 1.08998 * 117.50014 * 359.97438 * 20 18 17 37 37 H 0.96700 * 114.00112 * 269.72522 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1865 -6.0980 -0.0007 13 8 3.4023 -6.0981 -0.0003 14 6 1.4488 -7.3756 -0.0019 15 6 0.0490 -7.3901 -0.0029 16 6 -0.5952 -8.6144 -0.0046 17 6 0.1540 -9.7776 -0.0057 18 6 -0.5489 -11.1105 -0.0081 19 6 -2.0312 -11.1282 0.3705 20 6 -0.9859 -11.6812 1.3425 21 7 1.4723 -9.7406 -0.0102 22 6 2.1375 -8.5977 -0.0035 23 8 3.4917 -8.6071 -0.0034 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6240 -2.5566 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.5426 -4.9308 0.0000 30 1 -0.5140 -6.4685 -0.0033 31 1 -1.6742 -8.6618 -0.0050 32 1 -0.2153 -11.8165 -0.7686 33 1 -2.4979 -10.1757 0.6218 34 1 -2.6727 -11.8461 -0.1406 35 1 -0.9402 -12.7626 1.4705 36 1 -0.7646 -11.0927 2.2329 37 1 3.8849 -8.6107 0.8800 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935340396.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:47 Heat of formation + Delta-G solvation = -47.517983 kcal Electronic energy + Delta-G solvation = -20172.152269 eV Core-core repulsion = 16914.358960 eV Total energy + Delta-G solvation = -3257.793308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.02950 -40.29080 -38.76923 -37.25641 -36.57385 -34.92153 -33.85480 -31.77642 -30.94154 -27.23686 -26.00147 -24.58561 -23.23518 -22.88359 -22.53448 -21.53891 -19.61038 -18.85024 -18.50792 -18.08196 -17.28460 -16.62114 -16.51403 -16.42522 -16.08480 -15.72643 -15.33182 -14.83554 -14.54163 -14.30255 -14.18529 -13.77070 -13.22623 -13.00537 -12.95002 -12.81402 -12.54103 -12.28117 -12.26259 -11.69170 -11.64334 -11.48791 -11.36108 -11.15448 -10.99791 -10.60821 -10.49384 -10.14522 -9.80610 -8.24673 -6.34607 -0.56527 0.00824 1.42104 1.42244 1.53618 1.72358 2.06578 2.36171 2.43426 2.55245 3.02203 3.10424 3.28278 3.62391 3.66160 3.86742 3.94234 4.05501 4.16123 4.34645 4.45394 4.47615 4.55209 4.76000 4.79759 4.83916 4.87762 5.08010 5.19521 5.22371 5.27776 5.37011 5.46683 5.57369 5.77629 6.15359 6.45107 6.54393 6.76656 6.78159 7.15415 7.34614 8.87124 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.003145 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.737718 B = 8902.267245 C = 9695.727953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.141 3.859 11 N -0.710 5.710 12 C 0.554 3.446 13 O -0.567 6.567 14 C -0.223 4.223 15 C -0.018 4.018 16 C -0.177 4.177 17 C 0.200 3.800 18 C -0.136 4.136 19 C -0.149 4.149 20 C -0.160 4.160 21 N -0.525 5.525 22 C 0.358 3.642 23 O -0.478 6.478 24 H 0.266 0.734 25 H 0.010 0.990 26 H 0.012 0.988 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.409 0.591 30 H 0.170 0.830 31 H 0.184 0.816 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.477 -22.313 2.507 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.018 3.982 11 N -0.361 5.361 12 C 0.342 3.658 13 O -0.447 6.447 14 C -0.230 4.230 15 C -0.044 4.044 16 C -0.197 4.197 17 C 0.062 3.938 18 C -0.155 4.155 19 C -0.186 4.186 20 C -0.198 4.198 21 N -0.245 5.245 22 C 0.178 3.822 23 O -0.288 6.288 24 H 0.075 0.925 25 H 0.029 0.971 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.246 0.754 30 H 0.187 0.813 31 H 0.201 0.799 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -6.259 -22.893 1.914 23.811 hybrid contribution 0.062 1.831 0.351 1.865 sum -6.197 -21.063 2.265 22.072 Atomic orbital electron populations 1.70044 1.07436 1.28008 1.50947 1.25834 0.95801 1.02967 0.94414 0.85471 0.78652 0.78603 0.78486 1.19862 1.20441 1.19163 1.21460 0.93591 0.91947 1.51601 0.92385 1.19136 0.94195 0.91517 0.96581 1.21281 0.95129 0.81745 1.00053 1.46001 1.11025 1.05319 1.73780 1.18245 0.87046 0.83995 0.76556 1.90760 1.14677 1.87938 1.51321 1.21052 0.95939 0.93277 1.12759 1.22104 0.91278 1.00867 0.90159 1.22275 1.03727 0.90734 1.02927 1.20880 0.87120 0.95865 0.89952 1.20921 0.98314 0.93830 1.02413 1.23307 0.89372 1.04425 1.01518 1.23083 1.02549 1.02101 0.92031 1.67026 1.11200 1.29489 1.16767 1.19244 0.84944 0.86635 0.91343 1.84661 1.13584 1.95434 1.35101 0.92504 0.97148 0.96928 0.93145 0.93531 0.75375 0.81276 0.79857 0.85752 0.86825 0.85959 0.86759 0.89118 0.72201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.33 13.29 21.45 0.28 -53.05 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.55 -30.28 9.11 25.60 0.23 -30.05 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.02 1.14 5.09 29.85 0.15 1.30 16 10 C 0.14 6.04 5.61 86.38 0.48 6.53 16 11 N -0.71 -24.67 5.51 -466.28 -2.57 -27.24 16 12 C 0.55 19.75 7.77 86.69 0.67 20.42 16 13 O -0.57 -24.27 15.19 16.83 0.26 -24.01 16 14 C -0.22 -6.39 5.90 -19.91 -0.12 -6.51 16 15 C -0.02 -0.37 9.64 22.72 0.22 -0.15 16 16 C -0.18 -2.90 9.34 22.32 0.21 -2.69 16 17 C 0.20 4.01 6.46 42.58 0.28 4.29 16 18 C -0.14 -1.89 6.21 -11.54 -0.07 -1.96 16 19 C -0.15 -1.12 9.79 30.62 0.30 -0.82 16 20 C -0.16 -1.68 10.24 30.61 0.31 -1.36 16 21 N -0.53 -14.07 10.28 -296.06 -3.04 -17.12 16 22 C 0.36 10.66 7.77 85.13 0.66 11.32 16 23 O -0.48 -14.82 11.66 -66.35 -0.77 -15.60 16 24 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.41 11.70 6.57 -92.71 -0.61 11.09 16 30 H 0.17 2.57 6.52 -2.91 -0.02 2.55 16 31 H 0.18 1.55 6.22 -2.91 -0.02 1.54 16 32 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.11 0.60 6.37 -2.39 -0.02 0.59 16 34 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.42 9.50 9.06 -74.06 -0.67 8.83 16 Total: -1.00 -73.00 321.08 -0.19 -73.19 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.16 Total: 17.29 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 3.79 Total: 1.26 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -5.33 Total: -97.41 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.52 Total: -39.61 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -73.00 -0.19 -73.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935340396.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.669 kcal (2) G-P(sol) polarization free energy of solvation -73.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds