Wall clock time and date at job start Mon Mar 30 2020 02:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00357 * 2 1 4 4 H 1.48494 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47113 * 300.00027 * 3 2 1 6 6 H 1.48503 * 109.46826 * 59.99910 * 3 2 1 7 7 C 1.38814 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00169 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99674 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99687 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.77883 * 323.21726 * 10 9 7 12 12 C 1.55156 * 110.71630 * 199.97619 * 10 9 7 13 13 C 1.55137 * 101.47987 * 205.96999 * 12 10 9 14 14 N 1.47416 * 104.72276 * 37.29940 * 13 12 10 15 15 C 1.34777 * 125.64897 * 155.82015 * 14 13 12 16 16 O 1.21772 * 120.00396 * 179.69087 * 15 14 13 17 17 C 1.41555 * 119.99887 * 359.68392 * 15 14 13 18 18 C 1.35623 * 120.00082 * 179.72719 * 17 15 14 19 19 C 1.41615 * 120.00049 * 180.02562 * 18 17 15 20 20 C 1.37947 * 126.10097 * 179.71403 * 19 18 17 21 21 C 1.40317 * 106.52806 * 179.85266 * 20 19 18 22 22 C 1.35154 * 107.20328 * 0.41179 * 21 20 19 23 23 O 1.34025 * 109.03265 * 359.74127 * 22 21 20 24 24 C 1.47016 * 108.70400 * 335.54582 * 14 13 12 25 25 H 0.97005 * 119.99533 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00279 * 359.97438 * 9 7 2 27 27 H 1.08991 * 111.00656 * 324.20497 * 12 10 9 28 28 H 1.08999 * 111.00447 * 88.06315 * 12 10 9 29 29 H 1.08995 * 110.49908 * 278.45100 * 13 12 10 30 30 H 1.09006 * 110.33843 * 156.06189 * 13 12 10 31 31 H 1.07997 * 120.00253 * 0.02562 * 17 15 14 32 32 H 1.07998 * 120.00194 * 0.02562 * 18 17 15 33 33 H 1.07999 * 126.73880 * 359.97438 * 20 19 18 34 34 H 1.07993 * 126.39953 * 180.13386 * 21 20 19 35 35 H 1.07995 * 125.48681 * 179.74839 * 22 21 20 36 36 H 1.09008 * 109.88126 * 120.70556 * 24 14 13 37 37 H 1.08997 * 109.88761 * 241.71680 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9581 -3.5836 -0.6097 12 6 1.1511 -4.8141 -0.4953 13 6 1.8064 -6.0381 0.1970 14 7 2.2227 -5.5413 1.5210 15 6 2.4083 -6.2976 2.6210 16 8 2.7599 -5.7783 3.6648 17 6 2.1944 -7.6957 2.5630 18 6 2.3865 -8.4576 3.6684 19 6 2.1730 -9.8563 3.6102 20 6 2.3351 -10.7473 4.6509 21 6 2.0125 -12.0155 4.1445 22 6 1.6831 -11.8546 2.8436 23 8 1.7805 -10.5563 2.5255 24 6 2.4082 -4.0851 1.4412 25 1 -0.4850 0.8401 -0.0004 26 1 0.3554 -2.3881 0.0005 27 1 0.1231 -4.6758 -0.1605 28 1 1.1977 -4.9097 -1.5800 29 1 2.6728 -6.3787 -0.3700 30 1 1.0817 -6.8451 0.3052 31 1 1.8829 -8.1564 1.6372 32 1 2.7023 -7.9976 4.5931 33 1 2.6471 -10.5142 5.6582 34 1 2.0291 -12.9469 4.6908 35 1 1.3887 -12.6449 2.1691 36 1 1.7438 -3.5874 2.1477 37 1 3.4443 -3.8305 1.6645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966359192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:15 Heat of formation + Delta-G solvation = 18.181432 kcal Electronic energy + Delta-G solvation = -20162.497688 eV Core-core repulsion = 16907.553320 eV Total energy + Delta-G solvation = -3254.944368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.83102 -39.88002 -37.41914 -34.27267 -34.12122 -33.32900 -31.58253 -29.65473 -29.30282 -27.47925 -24.83666 -23.38006 -22.47718 -22.09024 -20.66725 -19.88543 -18.65765 -17.87626 -17.27290 -16.80788 -16.37679 -16.03153 -15.35445 -14.95972 -14.53442 -14.03513 -13.44792 -13.31758 -13.29284 -13.11512 -12.99492 -12.75524 -12.47853 -12.15063 -11.90771 -11.56829 -11.13800 -10.85018 -10.83033 -10.74076 -10.30504 -10.20865 -10.01841 -9.80815 -9.72954 -9.00035 -8.42614 -8.10013 -7.07819 -5.83081 -3.13815 0.27319 1.86773 2.47120 2.65424 3.31209 3.41910 3.48052 3.49902 3.53495 4.41994 4.55016 4.60875 4.64427 4.93195 4.94064 5.01503 5.26321 5.34857 5.36442 5.45416 5.53861 5.66352 5.74047 5.75471 5.83963 5.94679 6.04041 6.10634 6.17949 6.31778 6.38279 6.54138 6.72574 6.77053 6.90062 7.66724 7.80488 8.34049 8.38659 9.46552 9.99977 10.34761 11.39110 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.046655 B = 0.002910 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.005123 B = 9618.067796 C = 9963.830117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.713 5.713 10 C 0.171 3.829 11 H 0.066 0.934 12 C -0.140 4.140 13 C 0.100 3.900 14 N -0.607 5.607 15 C 0.554 3.446 16 O -0.552 6.552 17 C -0.188 4.188 18 C -0.005 4.005 19 C -0.001 4.001 20 C -0.170 4.170 21 C -0.218 4.218 22 C -0.025 4.025 23 O -0.166 6.166 24 C 0.082 3.918 25 H 0.256 0.744 26 H 0.387 0.613 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.130 0.870 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.206 0.794 36 H 0.074 0.926 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 -24.721 3.324 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.059 3.941 11 H 0.084 0.916 12 C -0.179 4.179 13 C -0.023 4.023 14 N -0.340 5.340 15 C 0.346 3.654 16 O -0.433 6.433 17 C -0.209 4.209 18 C -0.025 4.025 19 C -0.050 4.050 20 C -0.190 4.190 21 C -0.237 4.237 22 C -0.094 4.094 23 O -0.061 6.061 24 C -0.044 4.044 25 H 0.066 0.934 26 H 0.221 0.779 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.222 0.778 36 H 0.092 0.908 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.255 -24.144 3.609 24.628 hybrid contribution 0.098 0.669 0.149 0.693 sum 3.352 -23.475 3.758 24.009 Atomic orbital electron populations 1.69672 1.05180 1.25791 1.57130 1.24779 0.95539 0.97879 1.02429 0.86095 0.78866 0.83877 0.77210 1.20425 1.21786 1.21753 1.19308 0.91161 0.83918 1.43415 0.90863 1.42380 1.05816 0.99445 1.87707 1.21213 0.94827 0.86367 0.91663 0.91649 1.23098 1.00272 0.94195 1.00335 1.22399 0.98781 0.97593 0.83529 1.48514 1.66168 1.09628 1.09643 1.16648 0.78853 0.86978 0.82932 1.90830 1.48225 1.74989 1.29270 1.22211 1.04516 0.94232 0.99948 1.20660 0.94648 0.87249 0.99980 1.19935 1.06794 0.92778 0.85523 1.22362 1.04402 0.92193 0.99993 1.21783 1.07296 0.99221 0.95409 1.24305 1.04193 0.83474 0.97423 1.84111 1.66465 1.19036 1.36503 1.23237 1.01285 0.77695 1.02142 0.93405 0.77857 0.90424 0.89969 0.91319 0.91012 0.85241 0.82212 0.82629 0.82998 0.77773 0.90811 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.25 -6.75 9.98 -15.06 -0.15 -6.90 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.71 -17.45 5.18 -51.65 -0.27 -17.72 16 10 C 0.17 3.30 3.59 -66.10 -0.24 3.06 16 11 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 12 C -0.14 -2.10 6.71 -24.46 -0.16 -2.27 16 13 C 0.10 1.30 6.50 -2.41 -0.02 1.28 16 14 N -0.61 -10.04 3.32 -173.81 -0.58 -10.61 16 15 C 0.55 9.34 7.61 -14.99 -0.11 9.23 16 16 O -0.55 -11.25 16.44 5.12 0.08 -11.17 16 17 C -0.19 -2.45 8.91 -39.25 -0.35 -2.80 16 18 C -0.01 -0.06 9.39 -39.23 -0.37 -0.43 16 19 C 0.00 -0.01 6.84 -38.40 -0.26 -0.27 16 20 C -0.17 -1.51 10.90 -38.91 -0.42 -1.94 16 21 C -0.22 -1.61 10.87 -39.90 -0.43 -2.05 16 22 C -0.02 -0.18 12.06 29.63 0.36 0.18 16 23 O -0.17 -1.68 10.18 4.70 0.05 -1.64 16 24 C 0.08 1.59 6.62 -3.07 -0.02 1.57 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.39 10.04 7.71 -40.82 -0.31 9.72 16 27 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.77 7.11 -51.93 -0.37 0.40 16 31 H 0.13 1.44 6.39 -52.49 -0.34 1.11 16 32 H 0.16 1.84 7.46 -52.49 -0.39 1.45 16 33 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.21 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.07 1.65 8.03 -51.92 -0.42 1.23 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -33.27 322.07 -7.18 -40.46 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.75 Total: 7.35 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.28 Total: -1.71 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.12 Total: -55.40 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.13 Total: -12.80 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.27 -7.18 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966359192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.637 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds