Wall clock time and date at job start Mon Mar 30 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00357 * 2 1 4 4 H 1.48494 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47113 * 300.00027 * 3 2 1 6 6 H 1.48503 * 109.46826 * 59.99910 * 3 2 1 7 7 C 1.38814 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00169 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99674 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99687 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.77883 * 323.21726 * 10 9 7 12 12 C 1.55156 * 110.71630 * 199.97619 * 10 9 7 13 13 C 1.55137 * 101.47987 * 205.96999 * 12 10 9 14 14 N 1.47416 * 104.72276 * 37.29940 * 13 12 10 15 15 C 1.34777 * 125.64897 * 155.82015 * 14 13 12 16 16 O 1.21772 * 120.00396 * 179.69087 * 15 14 13 17 17 C 1.41555 * 119.99887 * 359.68392 * 15 14 13 18 18 C 1.35623 * 120.00082 * 179.72719 * 17 15 14 19 19 C 1.41615 * 120.00049 * 180.02562 * 18 17 15 20 20 C 1.37947 * 126.10097 * 179.71403 * 19 18 17 21 21 C 1.40317 * 106.52806 * 179.85266 * 20 19 18 22 22 C 1.35154 * 107.20328 * 0.41179 * 21 20 19 23 23 O 1.34025 * 109.03265 * 359.74127 * 22 21 20 24 24 C 1.47016 * 108.70400 * 335.54582 * 14 13 12 25 25 H 0.97005 * 119.99533 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00279 * 359.97438 * 9 7 2 27 27 H 1.08991 * 111.00656 * 324.20497 * 12 10 9 28 28 H 1.08999 * 111.00447 * 88.06315 * 12 10 9 29 29 H 1.08995 * 110.49908 * 278.45100 * 13 12 10 30 30 H 1.09006 * 110.33843 * 156.06189 * 13 12 10 31 31 H 1.07997 * 120.00253 * 0.02562 * 17 15 14 32 32 H 1.07998 * 120.00194 * 0.02562 * 18 17 15 33 33 H 1.07999 * 126.73880 * 359.97438 * 20 19 18 34 34 H 1.07993 * 126.39953 * 180.13386 * 21 20 19 35 35 H 1.07995 * 125.48681 * 179.74839 * 22 21 20 36 36 H 1.09008 * 109.88126 * 120.70556 * 24 14 13 37 37 H 1.08997 * 109.88761 * 241.71680 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9581 -3.5836 -0.6097 12 6 1.1511 -4.8141 -0.4953 13 6 1.8064 -6.0381 0.1970 14 7 2.2227 -5.5413 1.5210 15 6 2.4083 -6.2976 2.6210 16 8 2.7599 -5.7783 3.6648 17 6 2.1944 -7.6957 2.5630 18 6 2.3865 -8.4576 3.6684 19 6 2.1730 -9.8563 3.6102 20 6 2.3351 -10.7473 4.6509 21 6 2.0125 -12.0155 4.1445 22 6 1.6831 -11.8546 2.8436 23 8 1.7805 -10.5563 2.5255 24 6 2.4082 -4.0851 1.4412 25 1 -0.4850 0.8401 -0.0004 26 1 0.3554 -2.3881 0.0005 27 1 0.1231 -4.6758 -0.1605 28 1 1.1977 -4.9097 -1.5800 29 1 2.6728 -6.3787 -0.3700 30 1 1.0817 -6.8451 0.3052 31 1 1.8829 -8.1564 1.6372 32 1 2.7023 -7.9976 4.5931 33 1 2.6471 -10.5142 5.6582 34 1 2.0291 -12.9469 4.6908 35 1 1.3887 -12.6449 2.1691 36 1 1.7438 -3.5874 2.1477 37 1 3.4443 -3.8305 1.6645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966359192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:14 Heat of formation + Delta-G solvation = -4.141337 kcal Electronic energy + Delta-G solvation = -20163.465676 eV Core-core repulsion = 16907.553320 eV Total energy + Delta-G solvation = -3255.912356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.48979 -41.19248 -38.83756 -35.94676 -35.22009 -33.99331 -33.35894 -31.17587 -30.27516 -28.88008 -26.31149 -24.90203 -23.63381 -22.78335 -21.76832 -21.14191 -19.85029 -19.16461 -18.80633 -17.80363 -17.44222 -17.04832 -16.66667 -16.42056 -15.75265 -15.51202 -15.24516 -14.84802 -14.32101 -14.09808 -13.89029 -13.67332 -13.50636 -13.43609 -13.20071 -13.02209 -12.91720 -12.55504 -12.41966 -12.09271 -11.77648 -11.72186 -11.57643 -11.16174 -10.99897 -10.84038 -9.71576 -9.11480 -8.93473 -7.98487 -5.28700 -0.60495 1.16119 1.46476 1.47977 1.57549 1.71199 2.01185 2.05889 2.39507 2.54603 3.32632 3.56576 3.66377 3.89344 3.94864 4.00248 4.05933 4.14639 4.29305 4.34363 4.36317 4.53163 4.63501 4.72210 4.87408 4.88546 4.99734 5.00833 5.09421 5.14159 5.17633 5.33764 5.40308 5.51291 5.54832 6.09569 6.23515 6.54209 7.09259 7.30253 8.02103 8.25605 9.24743 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.046655 B = 0.002910 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.005123 B = 9618.067796 C = 9963.830117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.296 1.296 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.726 5.726 10 C 0.165 3.835 11 H 0.073 0.927 12 C -0.129 4.129 13 C 0.105 3.895 14 N -0.611 5.611 15 C 0.552 3.448 16 O -0.603 6.603 17 C -0.216 4.216 18 C 0.024 3.976 19 C -0.044 4.044 20 C -0.157 4.157 21 C -0.232 4.232 22 C -0.007 4.007 23 O -0.180 6.180 24 C 0.093 3.907 25 H 0.252 0.748 26 H 0.376 0.624 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.170 0.830 34 H 0.179 0.821 35 H 0.246 0.754 36 H 0.034 0.966 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 -28.073 2.621 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.224 1.224 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.365 5.365 10 C 0.055 3.945 11 H 0.091 0.909 12 C -0.168 4.168 13 C -0.017 4.017 14 N -0.343 5.343 15 C 0.347 3.653 16 O -0.488 6.488 17 C -0.237 4.237 18 C 0.004 3.996 19 C -0.092 4.092 20 C -0.176 4.176 21 C -0.250 4.250 22 C -0.076 4.076 23 O -0.076 6.076 24 C -0.033 4.033 25 H 0.061 0.939 26 H 0.209 0.791 27 H 0.085 0.915 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.188 0.812 34 H 0.196 0.804 35 H 0.262 0.738 36 H 0.052 0.948 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.849 -27.548 2.879 27.964 hybrid contribution -0.056 1.408 0.482 1.489 sum 3.793 -26.141 3.360 26.627 Atomic orbital electron populations 1.69816 1.06598 1.26123 1.59209 1.25574 0.96392 1.01154 1.03407 0.85094 0.78306 0.79837 0.76646 1.19026 1.21635 1.22387 1.19679 0.91544 0.85125 1.41372 0.90451 1.42538 1.05505 1.00641 1.87817 1.21425 0.95760 0.85822 0.91518 0.90911 1.23045 0.98794 0.92923 1.01999 1.22632 1.00465 0.97157 0.81423 1.48557 1.66300 1.08143 1.11262 1.17257 0.77649 0.88399 0.82044 1.90792 1.50843 1.76129 1.31052 1.21948 1.08386 0.91761 1.01567 1.20705 0.91519 0.88154 0.99216 1.19809 1.10303 0.92452 0.86651 1.22792 1.01860 0.92722 1.00250 1.22189 1.07412 0.99596 0.95835 1.25257 1.01157 0.83034 0.98159 1.84104 1.66698 1.20227 1.36535 1.22789 0.99387 0.79947 1.01189 0.93918 0.79119 0.91465 0.87423 0.88546 0.87968 0.83109 0.82836 0.81208 0.80376 0.73809 0.94784 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 46.55 29.55 68.60 2.03 48.57 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.25 -13.62 9.98 84.03 0.84 -12.78 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.73 -36.34 5.18 -317.32 -1.64 -37.98 16 10 C 0.17 6.37 3.59 46.18 0.17 6.54 16 11 H 0.07 2.71 8.12 -2.39 -0.02 2.70 16 12 C -0.13 -3.68 6.71 32.07 0.22 -3.47 16 13 C 0.10 2.46 6.50 86.94 0.57 3.03 16 14 N -0.61 -20.20 3.32 -821.99 -2.73 -22.94 16 15 C 0.55 18.94 7.61 85.06 0.65 19.58 16 16 O -0.60 -25.79 16.44 -4.58 -0.08 -25.87 16 17 C -0.22 -5.48 8.91 22.48 0.20 -5.28 16 18 C 0.02 0.55 9.39 22.50 0.21 0.76 16 19 C -0.04 -0.85 6.84 23.03 0.16 -0.69 16 20 C -0.16 -2.39 10.90 22.71 0.25 -2.14 16 21 C -0.23 -2.55 10.87 22.06 0.24 -2.31 16 22 C -0.01 -0.08 12.06 67.11 0.81 0.73 16 23 O -0.18 -3.14 10.18 -6.11 -0.06 -3.20 16 24 C 0.09 3.77 6.62 86.73 0.57 4.34 16 25 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 26 H 0.38 20.17 7.71 -92.71 -0.72 19.45 16 27 H 0.07 2.08 8.00 -2.39 -0.02 2.06 16 28 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 1.85 7.11 -2.38 -0.02 1.84 16 31 H 0.15 3.05 6.39 -2.91 -0.02 3.03 16 32 H 0.15 3.61 7.46 -2.91 -0.02 3.59 16 33 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 35 H 0.25 0.27 8.06 -2.91 -0.02 0.24 16 36 H 0.03 1.62 8.03 -2.38 -0.02 1.60 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -75.42 322.07 3.50 -71.91 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.37 Total: 23.96 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.34 Total: 4.60 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -4.09 Total: -119.98 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.14 Total: -29.07 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -75.42 3.50 -71.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966359192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.772 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds