Wall clock time and date at job start Mon Mar 30 2020 02:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.64472 * 36.68318 * 10 9 7 12 12 C 1.55160 * 110.72244 * 160.02014 * 10 9 7 13 13 C 1.54911 * 101.58012 * 153.86339 * 12 10 9 14 14 N 1.47421 * 104.83561 * 322.98898 * 13 12 10 15 15 C 1.34773 * 125.65086 * 204.09437 * 14 13 12 16 16 O 1.21779 * 120.00387 * 180.02562 * 15 14 13 17 17 C 1.41556 * 120.00019 * 0.04400 * 15 14 13 18 18 C 1.35622 * 119.99794 * 180.02562 * 17 15 14 19 19 C 1.41610 * 119.99859 * 180.02562 * 18 17 15 20 20 C 1.37942 * 126.10571 * 179.97438 * 19 18 17 21 21 C 1.40318 * 106.53056 * 179.97438 * 20 19 18 22 22 C 1.35151 * 107.20396 * 0.02562 * 21 20 19 23 23 O 1.34024 * 109.03487 * 359.76695 * 22 21 20 24 24 C 1.47022 * 108.70243 * 24.13161 * 14 13 12 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.09002 * 111.00503 * 271.94036 * 12 10 9 28 28 H 1.09001 * 111.00117 * 35.79068 * 12 10 9 29 29 H 1.09006 * 110.35980 * 204.15168 * 13 12 10 30 30 H 1.09003 * 110.36812 * 81.83727 * 13 12 10 31 31 H 1.07995 * 119.99611 * 359.97438 * 17 15 14 32 32 H 1.07995 * 120.00596 * 359.97438 * 18 17 15 33 33 H 1.07999 * 126.73918 * 359.93725 * 20 19 18 34 34 H 1.07999 * 126.39991 * 180.02562 * 21 20 19 35 35 H 1.08004 * 125.48584 * 180.02562 * 22 21 20 36 36 H 1.08999 * 109.88498 * 239.52374 * 24 14 13 37 37 H 1.08998 * 109.88260 * 118.35480 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9581 -3.5809 0.6085 12 6 1.1509 -4.8144 0.4930 13 6 1.8014 -6.0373 -0.2006 14 7 2.2239 -5.5407 -1.5228 15 6 2.4102 -6.2965 -2.6230 16 8 2.7623 -5.7767 -3.6665 17 6 2.1963 -7.6947 -2.5657 18 6 2.3843 -8.4553 -3.6727 19 6 2.1698 -9.8539 -3.6156 20 6 2.3220 -10.7429 -4.6593 21 6 2.0061 -12.0123 -4.1517 22 6 1.6807 -11.8526 -2.8497 23 8 1.7845 -10.5554 -2.5291 24 6 2.4093 -4.0844 -1.4422 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 1.1967 -4.9104 1.5779 28 1 0.1231 -4.6759 0.1577 29 1 1.0739 -6.8414 -0.3121 30 1 2.6646 -6.3818 0.3689 31 1 1.8842 -8.1556 -1.6403 32 1 2.6968 -7.9943 -4.5980 33 1 2.6243 -10.5080 -5.6691 34 1 2.0203 -12.9432 -4.6991 35 1 1.3884 -12.6436 -2.1749 36 1 1.7455 -3.5865 -2.1490 37 1 3.4462 -3.8300 -1.6620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018440792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:21 Heat of formation + Delta-G solvation = -4.728482 kcal Electronic energy + Delta-G solvation = -20202.160201 eV Core-core repulsion = 16946.222385 eV Total energy + Delta-G solvation = -3255.937816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.51337 -41.26575 -38.95537 -36.29161 -35.26033 -34.02003 -33.39020 -31.10222 -30.32342 -28.81669 -26.19858 -25.00259 -23.69842 -22.80842 -21.91826 -21.22188 -19.89721 -19.40817 -18.85970 -17.90008 -17.44180 -17.07179 -16.72341 -16.49506 -15.86893 -15.66419 -15.45779 -14.89945 -14.42531 -14.18084 -13.91691 -13.70467 -13.61805 -13.41272 -13.15697 -12.98520 -12.80274 -12.55592 -12.40789 -11.89187 -11.80725 -11.73161 -11.28762 -11.20106 -10.99372 -10.86320 -9.78873 -9.23381 -8.96750 -8.43119 -5.39183 -0.64111 1.13111 1.57778 1.67527 1.68422 1.83713 1.95840 2.01466 2.34912 2.69303 3.32375 3.51041 3.53722 3.75053 3.88070 3.96215 4.02503 4.11271 4.21303 4.24620 4.26729 4.40910 4.57305 4.67158 4.78094 4.84321 4.91028 4.96582 5.05843 5.06602 5.10163 5.24668 5.32546 5.52515 5.57716 6.07067 6.45620 6.47998 7.01710 7.04724 7.92596 8.02696 9.08465 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.046617 B = 0.002920 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.492650 B = 9586.281240 C = 9934.191576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.101 4.101 3 Si 1.127 2.873 4 H -0.292 1.292 5 H -0.273 1.273 6 H -0.282 1.282 7 C -0.337 4.337 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.170 3.830 11 H 0.070 0.930 12 C -0.130 4.130 13 C 0.106 3.894 14 N -0.611 5.611 15 C 0.553 3.447 16 O -0.603 6.603 17 C -0.218 4.218 18 C 0.027 3.973 19 C -0.045 4.045 20 C -0.155 4.155 21 C -0.232 4.232 22 C -0.006 4.006 23 O -0.180 6.180 24 C 0.095 3.905 25 H 0.245 0.755 26 H 0.363 0.637 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.171 0.829 34 H 0.179 0.821 35 H 0.246 0.754 36 H 0.032 0.968 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -28.237 -2.710 28.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.293 4.293 3 Si 0.951 3.049 4 H -0.218 1.218 5 H -0.198 1.198 6 H -0.209 1.209 7 C -0.468 4.468 8 H 0.086 0.914 9 N -0.379 5.379 10 C 0.059 3.941 11 H 0.088 0.912 12 C -0.168 4.168 13 C -0.016 4.016 14 N -0.343 5.343 15 C 0.347 3.653 16 O -0.487 6.487 17 C -0.239 4.239 18 C 0.006 3.994 19 C -0.094 4.094 20 C -0.175 4.175 21 C -0.250 4.250 22 C -0.075 4.075 23 O -0.076 6.076 24 C -0.031 4.031 25 H 0.055 0.945 26 H 0.196 0.804 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.188 0.812 34 H 0.197 0.803 35 H 0.262 0.738 36 H 0.051 0.949 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.185 -26.184 -2.967 26.681 hybrid contribution -0.233 -1.271 -0.475 1.377 sum 3.952 -27.455 -3.442 27.951 Atomic orbital electron populations 1.70998 1.07172 1.27989 1.55892 1.27217 0.97113 1.04722 1.00223 0.82646 0.73428 0.71628 0.77180 1.21832 1.19835 1.20857 1.20393 0.92428 0.86917 1.47072 0.91384 1.42536 1.04717 1.01481 1.89146 1.21359 0.95629 0.85452 0.91612 0.91172 1.23021 0.98742 0.92999 1.02070 1.22581 1.00496 0.97063 0.81468 1.48547 1.66362 1.08012 1.11403 1.17277 0.77587 0.88436 0.81966 1.90797 1.50790 1.76113 1.31051 1.21927 1.08652 0.91662 1.01614 1.20709 0.91266 0.88187 0.99191 1.19800 1.10594 0.92419 0.86540 1.22799 1.01729 0.92719 1.00220 1.22196 1.07428 0.99578 0.95827 1.25269 1.01031 0.83056 0.98166 1.84107 1.66835 1.20273 1.36375 1.22727 0.99323 0.80114 1.00966 0.94452 0.80417 0.87377 0.91445 0.87776 0.88540 0.83093 0.82815 0.81171 0.80331 0.73781 0.94949 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.39 13.70 21.65 0.30 -61.09 16 2 C -0.10 -5.94 5.50 84.86 0.47 -5.47 16 3 Si 1.13 52.61 29.92 68.60 2.05 54.66 16 4 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.34 -19.05 9.98 84.03 0.84 -18.21 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 9 N -0.74 -37.17 5.17 -317.33 -1.64 -38.82 16 10 C 0.17 6.67 3.59 46.19 0.17 6.83 16 11 H 0.07 2.72 8.12 -2.39 -0.02 2.70 16 12 C -0.13 -3.71 6.69 31.99 0.21 -3.50 16 13 C 0.11 2.49 6.48 86.86 0.56 3.06 16 14 N -0.61 -20.36 3.33 -822.39 -2.74 -23.10 16 15 C 0.55 19.02 7.61 85.06 0.65 19.67 16 16 O -0.60 -25.86 16.44 -4.60 -0.08 -25.94 16 17 C -0.22 -5.52 8.91 22.48 0.20 -5.32 16 18 C 0.03 0.61 9.39 22.50 0.21 0.82 16 19 C -0.05 -0.87 6.84 23.03 0.16 -0.71 16 20 C -0.16 -2.34 10.90 22.71 0.25 -2.09 16 21 C -0.23 -2.51 10.87 22.06 0.24 -2.27 16 22 C -0.01 -0.07 12.06 67.11 0.81 0.74 16 23 O -0.18 -3.12 10.18 -6.22 -0.06 -3.18 16 24 C 0.10 3.91 6.62 86.73 0.57 4.48 16 25 H 0.25 15.34 6.77 -92.71 -0.63 14.71 16 26 H 0.36 19.02 6.55 -92.71 -0.61 18.41 16 27 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.07 2.06 8.00 -2.39 -0.02 2.04 16 29 H 0.10 1.88 7.12 -2.38 -0.02 1.87 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.15 3.05 6.40 -2.91 -0.02 3.03 16 32 H 0.15 3.60 7.46 -2.91 -0.02 3.58 16 33 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 35 H 0.25 0.23 8.06 -2.91 -0.02 0.20 16 36 H 0.03 1.56 8.03 -2.39 -0.02 1.54 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -78.32 320.37 3.79 -74.53 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.62 Total: 24.91 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.34 Total: -1.98 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -4.08 Total: -123.00 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.14 Total: -29.12 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.05 Total: 54.66 kcal Total: -78.32 3.79 -74.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018440792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.804 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds