Wall clock time and date at job start Mon Mar 30 2020 02:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99429 * 2 1 4 4 H 1.48501 * 109.47202 * 269.99916 * 3 2 1 5 5 H 1.48508 * 109.47265 * 30.00028 * 3 2 1 6 6 H 1.48497 * 109.47003 * 149.99775 * 3 2 1 7 7 C 1.38804 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00450 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00087 * 0.02562 * 7 2 1 10 10 C 1.47871 * 126.94487 * 359.97438 * 9 7 2 11 11 C 1.56013 * 105.10601 * 182.00434 * 10 9 7 12 12 H 1.08998 * 116.25385 * 158.83703 * 11 10 9 13 13 C 1.57087 * 99.60780 * 32.80380 * 11 10 9 14 14 C 1.49288 * 126.94704 * 180.02562 * 9 7 2 15 15 H 1.09010 * 116.15140 * 16.70101 * 14 9 7 16 16 C 1.56019 * 104.09426 * 246.69978 * 14 9 7 17 17 N 1.47871 * 105.10171 * 288.76619 * 16 14 9 18 18 C 1.34774 * 126.94622 * 182.00044 * 17 16 14 19 19 O 1.21282 * 120.00084 * 179.97438 * 18 17 16 20 20 C 1.50701 * 119.99807 * 359.97438 * 18 17 16 21 21 C 1.50695 * 109.47179 * 179.97438 * 20 18 17 22 22 C 1.34515 * 125.79031 * 89.71813 * 21 20 18 23 23 C 1.41384 * 106.84426 * 179.89160 * 22 21 20 24 24 C 1.34520 * 106.83719 * 0.37204 * 23 22 21 25 25 O 1.34303 * 125.79067 * 270.02699 * 21 20 18 26 26 H 0.96986 * 120.00320 * 0.02562 * 1 2 3 27 27 H 1.08998 * 110.31546 * 63.09138 * 10 9 7 28 28 H 1.09001 * 110.31608 * 300.91083 * 10 9 7 29 29 H 1.08994 * 112.36255 * 64.28057 * 13 11 10 30 30 H 1.09002 * 112.36833 * 191.71741 * 13 11 10 31 31 H 1.09000 * 110.31348 * 47.67250 * 16 14 9 32 32 H 1.08995 * 110.31471 * 169.75985 * 16 14 9 33 33 H 1.08992 * 109.47243 * 300.00086 * 20 18 17 34 34 H 1.09003 * 109.46954 * 60.00052 * 20 18 17 35 35 H 1.08000 * 126.57498 * 0.02562 * 22 21 20 36 36 H 1.07992 * 126.58259 * 180.11929 * 23 22 21 37 37 H 1.07995 * 125.78398 * 179.79396 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4404 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0016 10 6 -0.1420 -2.5669 -0.0018 11 6 -0.3635 -4.1104 0.0495 12 1 -1.3358 -4.4463 0.4099 13 6 0.8844 -4.5259 0.9085 14 6 1.9105 -3.7616 -0.0018 15 1 2.9608 -3.8367 0.2802 16 6 1.5097 -4.3450 -1.3921 17 7 0.0529 -4.5830 -1.3046 18 6 -0.7391 -5.1183 -2.2547 19 8 -1.9259 -5.2573 -2.0474 20 6 -0.1498 -5.5441 -3.5748 21 6 -1.2379 -6.1065 -4.4526 22 6 -1.9974 -5.4035 -5.3120 23 6 -2.8807 -6.3222 -5.9241 24 6 -2.6138 -7.5303 -5.3960 25 8 -1.6179 -7.3935 -4.5054 26 1 -0.4850 0.8399 -0.0004 27 1 -0.5737 -2.1527 -0.9129 28 1 -0.5812 -2.0923 0.8757 29 1 0.8454 -4.1207 1.9196 30 1 1.0496 -5.6033 0.9059 31 1 1.7290 -3.6262 -2.1816 32 1 2.0371 -5.2809 -1.5761 33 1 0.3041 -4.6828 -4.0648 34 1 0.6098 -6.3071 -3.4043 35 1 -1.9414 -4.3415 -5.5000 36 1 -3.6291 -6.0966 -6.6692 37 1 -3.1151 -8.4536 -5.6462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032693998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:29 Heat of formation + Delta-G solvation = 43.624685 kcal Electronic energy + Delta-G solvation = -21468.491923 eV Core-core repulsion = 18214.650857 eV Total energy + Delta-G solvation = -3253.841066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.46317 -40.04921 -37.87229 -33.66142 -33.05743 -32.19676 -31.25797 -29.10997 -28.57930 -26.88128 -25.21718 -23.50587 -21.67121 -21.23588 -20.10885 -19.84942 -18.50369 -17.36202 -17.21224 -16.40561 -15.83017 -15.55550 -15.23030 -14.50774 -14.28372 -13.91795 -13.57875 -13.21471 -12.74075 -12.61958 -12.51543 -12.20767 -11.95385 -11.77551 -11.59681 -11.33810 -11.03200 -10.87273 -10.81248 -10.61576 -10.28087 -10.09766 -9.81571 -9.66674 -9.54706 -8.74248 -8.35943 -8.03509 -6.95898 -5.79297 -3.14328 1.78880 2.68670 2.95200 3.05872 3.35437 3.40279 3.43023 3.48185 4.39483 4.65559 4.81216 5.04219 5.10448 5.14417 5.15608 5.27613 5.36988 5.44975 5.53169 5.61265 5.75605 5.86687 5.89333 6.01720 6.10663 6.18207 6.26211 6.37965 6.46129 6.56542 6.58665 6.66307 7.21473 7.39876 7.46306 7.69456 8.04293 8.08180 8.54488 9.07447 9.68443 10.37285 11.32736 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026536 B = 0.004467 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.900672 B = 6266.542171 C = 6745.693674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.598 5.598 10 C 0.174 3.826 11 C 0.099 3.901 12 H 0.113 0.887 13 C -0.152 4.152 14 C 0.140 3.860 15 H 0.107 0.893 16 C 0.082 3.918 17 N -0.606 5.606 18 C 0.528 3.472 19 O -0.545 6.545 20 C -0.057 4.057 21 C 0.014 3.986 22 C -0.199 4.199 23 C -0.212 4.212 24 C -0.046 4.046 25 O -0.174 6.174 26 H 0.254 0.746 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 -13.134 -7.096 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.322 5.322 10 C 0.049 3.951 11 C -0.004 4.004 12 H 0.131 0.869 13 C -0.192 4.192 14 C 0.032 3.968 15 H 0.125 0.875 16 C -0.044 4.044 17 N -0.340 5.340 18 C 0.316 3.684 19 O -0.423 6.423 20 C -0.097 4.097 21 C -0.037 4.037 22 C -0.218 4.218 23 C -0.231 4.231 24 C -0.113 4.113 25 O -0.070 6.070 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.182 -13.160 -6.876 14.849 hybrid contribution 0.207 1.115 -0.318 1.178 sum 0.389 -12.045 -7.193 14.035 Atomic orbital electron populations 1.69916 1.04968 1.25371 1.56313 1.24822 0.95670 0.97736 1.01968 0.86118 0.78573 0.83445 0.77570 1.21602 1.21673 1.20619 1.19047 0.90409 0.82060 1.44571 0.90117 1.45257 1.01349 0.99304 1.86299 1.21928 0.84676 0.87156 1.01350 1.24335 0.97807 0.97665 0.80563 0.86875 1.24166 0.96817 0.98933 0.99280 1.23163 0.96614 0.86305 0.90759 0.87487 1.23320 0.79773 0.98988 1.02279 1.49188 1.09448 1.59979 1.15339 1.19830 0.86259 0.77805 0.84504 1.90703 1.15248 1.56155 1.80242 1.20081 0.94962 1.02158 0.92502 1.21587 1.00306 0.81541 1.00254 1.21547 0.98719 1.00725 1.00819 1.21781 1.03541 0.92945 1.04844 1.23924 0.92942 1.00417 0.94066 1.83970 1.43677 1.28427 1.50927 0.93547 0.93447 0.92617 0.89754 0.91624 0.90910 0.92652 0.86053 0.87522 0.83565 0.83616 0.78315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.56 55.49 0.59 -25.96 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.41 29.55 -169.99 -5.02 16.38 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.23 -6.08 10.37 -15.06 -0.16 -6.23 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.06 3.02 -156.38 -0.47 -14.53 16 10 C 0.17 4.13 4.76 -1.68 -0.01 4.12 16 11 C 0.10 1.90 5.23 -62.52 -0.33 1.57 16 12 H 0.11 2.15 8.08 -51.93 -0.42 1.73 16 13 C -0.15 -2.53 6.80 -22.33 -0.15 -2.68 16 14 C 0.14 2.51 5.52 -62.59 -0.35 2.16 16 15 H 0.11 1.69 8.14 -51.92 -0.42 1.27 16 16 C 0.08 1.31 6.01 -1.67 -0.01 1.30 16 17 N -0.61 -10.93 2.95 -156.74 -0.46 -11.39 16 18 C 0.53 9.65 7.89 -10.99 -0.09 9.56 16 19 O -0.55 -12.01 16.40 5.56 0.09 -11.92 16 20 C -0.06 -0.80 5.52 -29.04 -0.16 -0.96 16 21 C 0.01 0.21 5.81 -35.63 -0.21 0.00 16 22 C -0.20 -2.91 10.81 -39.70 -0.43 -3.34 16 23 C -0.21 -2.68 10.91 -39.70 -0.43 -3.12 16 24 C -0.05 -0.55 12.09 29.42 0.36 -0.20 16 25 O -0.17 -2.59 10.65 5.70 0.06 -2.53 16 26 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.05 1.30 7.68 -51.93 -0.40 0.90 16 28 H 0.06 1.46 7.46 -51.93 -0.39 1.08 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.12 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -33.02 312.20 -7.55 -40.57 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.98 Total: 2.70 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -2.06 Total: 1.96 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.35 Total: -51.88 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.15 Total: -14.45 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.02 -7.55 -40.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032693998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.197 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds