Wall clock time and date at job start Mon Mar 30 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99821 * 2 1 4 4 H 1.48501 * 109.47229 * 269.99842 * 3 2 1 5 5 H 1.48500 * 109.47505 * 30.00016 * 3 2 1 6 6 H 1.48499 * 109.47063 * 150.00172 * 3 2 1 7 7 C 1.38809 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99848 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99799 * 0.02562 * 7 2 1 10 10 C 1.47060 * 136.06048 * 359.94873 * 9 7 2 11 11 C 1.53502 * 87.98821 * 207.15747 * 10 9 7 12 12 C 1.47066 * 136.05349 * 179.97438 * 9 7 2 13 13 H 1.09000 * 113.46827 * 267.61868 * 12 9 7 14 14 C 1.53001 * 113.46961 * 38.06692 * 12 9 7 15 15 N 1.46498 * 109.46763 * 285.48958 * 14 12 9 16 16 C 1.34783 * 120.00109 * 179.97438 * 15 14 12 17 17 O 1.21593 * 119.99813 * 0.02562 * 16 15 14 18 18 C 1.47535 * 120.00153 * 180.02562 * 16 15 14 19 19 C 1.39709 * 120.19028 * 0.02562 * 18 16 15 20 20 C 1.37783 * 119.90250 * 179.97438 * 19 18 16 21 21 C 1.38549 * 120.30595 * 0.02562 * 20 19 18 22 22 C 1.38049 * 120.38814 * 359.97438 * 21 20 19 23 23 C 1.38717 * 120.08560 * 359.73536 * 22 21 20 24 24 O 1.35651 * 120.15240 * 180.27882 * 23 22 21 25 25 H 0.97003 * 119.99474 * 0.02562 * 1 2 3 26 26 H 1.09007 * 113.46761 * 321.93681 * 10 9 7 27 27 H 1.09003 * 113.46830 * 92.37649 * 10 9 7 28 28 H 1.08997 * 114.20475 * 220.34600 * 11 10 9 29 29 H 1.08995 * 114.20623 * 87.51550 * 11 10 9 30 30 H 1.08998 * 109.47322 * 45.48839 * 14 12 9 31 31 H 1.09005 * 109.47186 * 165.49224 * 14 12 9 32 32 H 0.97002 * 120.00400 * 0.02562 * 15 14 12 33 33 H 1.08000 * 120.04947 * 359.95641 * 19 18 16 34 34 H 1.08009 * 119.84834 * 180.02562 * 20 19 18 35 35 H 1.07996 * 119.80296 * 179.97438 * 21 20 19 36 36 H 1.07997 * 119.95897 * 180.02562 * 22 21 20 37 37 H 0.96696 * 114.00119 * 270.26100 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.0877 -2.7948 0.0010 11 6 0.3419 -4.0917 0.7007 12 6 1.6799 -3.8153 0.0005 13 1 1.7442 -4.2466 -0.9984 14 6 2.8991 -4.1404 0.8659 15 7 4.1154 -3.6902 0.1847 16 6 5.3189 -3.8724 0.7636 17 8 5.3950 -4.4111 1.8510 18 6 6.5437 -3.4185 0.0778 19 6 6.4608 -2.7987 -1.1715 20 6 7.6084 -2.3765 -1.8065 21 6 8.8457 -2.5642 -1.2119 22 6 8.9420 -3.1752 0.0222 23 6 7.7965 -3.6011 0.6786 24 8 7.8891 -4.1965 1.8939 25 1 -0.4849 0.8401 -0.0004 26 1 -0.7224 -2.1585 0.6179 27 1 -0.4938 -2.9545 -0.9979 28 1 -0.1731 -4.9837 0.3441 29 1 0.3830 -4.0207 1.7876 30 1 2.8101 -3.6308 1.8252 31 1 2.9518 -5.2168 1.0298 32 1 4.0547 -3.2601 -0.6827 33 1 5.4985 -2.6509 -1.6391 34 1 7.5432 -1.8971 -2.7721 35 1 9.7401 -2.2305 -1.7170 36 1 9.9100 -3.3176 0.4795 37 1 7.9888 -5.1575 1.8545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038068474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:59 Heat of formation + Delta-G solvation = 8.878230 kcal Electronic energy + Delta-G solvation = -21163.737136 eV Core-core repulsion = 17908.389351 eV Total energy + Delta-G solvation = -3255.347785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30059 -38.71052 -37.79772 -36.69063 -34.01472 -32.25682 -31.39193 -29.85275 -28.06402 -27.50191 -23.86734 -23.48524 -22.64957 -21.73344 -20.26820 -19.28830 -18.50455 -17.54119 -16.56515 -16.10724 -15.69258 -15.23490 -14.98811 -14.88070 -14.51314 -14.06807 -13.95565 -13.63422 -13.12273 -12.87994 -12.40563 -12.25688 -11.86814 -11.76292 -11.53662 -11.12802 -10.99512 -10.77113 -10.70979 -10.58715 -9.99490 -9.84626 -9.57909 -9.20307 -9.14098 -8.82827 -8.79091 -8.49777 -6.91861 -5.78755 -3.11447 0.78063 1.15072 3.02815 3.36375 3.43085 3.44417 3.51193 3.80162 4.17420 4.41859 4.71733 4.75933 4.90881 5.15531 5.24899 5.29208 5.38524 5.55354 5.61165 5.69529 5.77753 5.90662 6.08786 6.10689 6.20214 6.28262 6.33486 6.39896 6.58528 6.61456 6.71364 6.89427 7.21044 7.37890 7.56261 7.68623 7.90596 7.95798 8.57523 9.01085 9.68408 10.60920 11.38367 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016424 B = 0.005703 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.415628 B = 4908.632360 C = 6011.153006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.215 4.215 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.126 3.874 13 H 0.048 0.952 14 C 0.123 3.877 15 N -0.709 5.709 16 C 0.552 3.448 17 O -0.534 6.534 18 C -0.159 4.159 19 C -0.068 4.068 20 C -0.138 4.138 21 C -0.083 4.083 22 C -0.160 4.160 23 C 0.164 3.836 24 O -0.477 6.477 25 H 0.253 0.747 26 H 0.072 0.928 27 H 0.025 0.975 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.401 0.599 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.426 -9.194 -4.128 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.342 4.342 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.018 3.982 13 H 0.065 0.935 14 C -0.002 4.002 15 N -0.360 5.360 16 C 0.338 3.662 17 O -0.413 6.413 18 C -0.163 4.163 19 C -0.087 4.087 20 C -0.156 4.156 21 C -0.101 4.101 22 C -0.179 4.179 23 C 0.118 3.882 24 O -0.287 6.287 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.236 0.764 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 13.419 -8.636 -3.108 16.257 hybrid contribution 0.439 0.838 -0.774 1.222 sum 13.858 -7.798 -3.882 16.368 Atomic orbital electron populations 1.69828 1.04968 1.25295 1.56366 1.24764 0.95634 0.97407 1.02486 0.86199 0.78835 0.83725 0.77555 1.21606 1.21572 1.20562 1.18845 0.89990 0.81361 1.44010 0.90244 1.45669 1.02620 0.98541 1.85889 1.22032 0.88700 0.90212 0.96490 1.23665 0.96842 0.99043 1.00414 1.22434 0.92075 0.87811 0.95832 0.93468 1.21816 0.82925 0.98201 0.97231 1.45908 1.05863 1.60850 1.23407 1.18030 0.83221 0.79620 0.85296 1.90765 1.86939 1.43428 1.20127 1.20567 0.94137 1.05349 0.96232 1.21379 0.99465 0.94746 0.93138 1.21125 0.92148 1.01404 1.00924 1.21190 0.97963 0.96476 0.94510 1.21424 0.98148 1.02638 0.95683 1.18511 0.90645 0.94734 0.84350 1.84764 1.95243 1.24998 1.23744 0.93670 0.90965 0.95730 0.92323 0.90169 0.91000 0.92209 0.76360 0.84901 0.85126 0.85324 0.84955 0.75008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 11.51 55.49 0.64 -26.30 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.21 -5.77 10.55 -15.06 -0.16 -5.93 16 8 H 0.08 2.06 7.50 -52.49 -0.39 1.67 16 9 N -0.60 -14.62 3.65 -176.98 -0.65 -15.27 16 10 C 0.15 3.45 7.39 -8.51 -0.06 3.39 16 11 C -0.16 -2.92 8.03 -26.20 -0.21 -3.13 16 12 C 0.13 2.43 4.10 -72.39 -0.30 2.13 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 14 C 0.12 2.26 5.52 -4.04 -0.02 2.24 16 15 N -0.71 -12.50 5.28 -61.35 -0.32 -12.82 16 16 C 0.55 10.00 7.76 -12.47 -0.10 9.91 16 17 O -0.53 -11.10 15.16 -16.60 -0.25 -11.36 16 18 C -0.16 -2.44 5.89 -104.85 -0.62 -3.05 16 19 C -0.07 -0.89 9.54 -39.20 -0.37 -1.26 16 20 C -0.14 -1.47 10.02 -39.63 -0.40 -1.87 16 21 C -0.08 -0.81 10.03 -39.54 -0.40 -1.21 16 22 C -0.16 -1.77 9.98 -39.47 -0.39 -2.16 16 23 C 0.16 2.30 6.72 -38.69 -0.26 2.04 16 24 O -0.48 -6.84 11.58 -40.53 -0.47 -7.31 16 25 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 30 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.40 6.64 6.40 -40.82 -0.26 6.38 16 33 H 0.13 1.62 6.40 -52.49 -0.34 1.28 16 34 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.39 3.91 9.06 45.56 0.41 4.33 16 LS Contribution 316.90 15.07 4.78 4.78 Total: -1.00 -33.80 316.90 -8.57 -42.37 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.89 Total: 7.99 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -3.38 Total: 0.82 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.33 Total: -54.39 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.72 Total: -18.66 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.80 -8.57 -42.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038068474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.251 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds