Wall clock time and date at job start Mon Mar 30 2020 02:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99821 * 2 1 4 4 H 1.48501 * 109.47229 * 269.99842 * 3 2 1 5 5 H 1.48500 * 109.47505 * 30.00016 * 3 2 1 6 6 H 1.48499 * 109.47063 * 150.00172 * 3 2 1 7 7 C 1.38809 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99848 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99799 * 0.02562 * 7 2 1 10 10 C 1.47060 * 136.06048 * 359.94873 * 9 7 2 11 11 C 1.53502 * 87.98821 * 207.15747 * 10 9 7 12 12 C 1.47066 * 136.05349 * 179.97438 * 9 7 2 13 13 H 1.09000 * 113.46827 * 267.61868 * 12 9 7 14 14 C 1.53001 * 113.46961 * 38.06692 * 12 9 7 15 15 N 1.46498 * 109.46763 * 285.48958 * 14 12 9 16 16 C 1.34783 * 120.00109 * 179.97438 * 15 14 12 17 17 O 1.21593 * 119.99813 * 0.02562 * 16 15 14 18 18 C 1.47535 * 120.00153 * 180.02562 * 16 15 14 19 19 C 1.39709 * 120.19028 * 0.02562 * 18 16 15 20 20 C 1.37783 * 119.90250 * 179.97438 * 19 18 16 21 21 C 1.38549 * 120.30595 * 0.02562 * 20 19 18 22 22 C 1.38049 * 120.38814 * 359.97438 * 21 20 19 23 23 C 1.38717 * 120.08560 * 359.73536 * 22 21 20 24 24 O 1.35651 * 120.15240 * 180.27882 * 23 22 21 25 25 H 0.97003 * 119.99474 * 0.02562 * 1 2 3 26 26 H 1.09007 * 113.46761 * 321.93681 * 10 9 7 27 27 H 1.09003 * 113.46830 * 92.37649 * 10 9 7 28 28 H 1.08997 * 114.20475 * 220.34600 * 11 10 9 29 29 H 1.08995 * 114.20623 * 87.51550 * 11 10 9 30 30 H 1.08998 * 109.47322 * 45.48839 * 14 12 9 31 31 H 1.09005 * 109.47186 * 165.49224 * 14 12 9 32 32 H 0.97002 * 120.00400 * 0.02562 * 15 14 12 33 33 H 1.08000 * 120.04947 * 359.95641 * 19 18 16 34 34 H 1.08009 * 119.84834 * 180.02562 * 20 19 18 35 35 H 1.07996 * 119.80296 * 179.97438 * 21 20 19 36 36 H 1.07997 * 119.95897 * 180.02562 * 22 21 20 37 37 H 0.96696 * 114.00119 * 270.26100 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.0877 -2.7948 0.0010 11 6 0.3419 -4.0917 0.7007 12 6 1.6799 -3.8153 0.0005 13 1 1.7442 -4.2466 -0.9984 14 6 2.8991 -4.1404 0.8659 15 7 4.1154 -3.6902 0.1847 16 6 5.3189 -3.8724 0.7636 17 8 5.3950 -4.4111 1.8510 18 6 6.5437 -3.4185 0.0778 19 6 6.4608 -2.7987 -1.1715 20 6 7.6084 -2.3765 -1.8065 21 6 8.8457 -2.5642 -1.2119 22 6 8.9420 -3.1752 0.0222 23 6 7.7965 -3.6011 0.6786 24 8 7.8891 -4.1965 1.8939 25 1 -0.4849 0.8401 -0.0004 26 1 -0.7224 -2.1585 0.6179 27 1 -0.4938 -2.9545 -0.9979 28 1 -0.1731 -4.9837 0.3441 29 1 0.3830 -4.0207 1.7876 30 1 2.8101 -3.6308 1.8252 31 1 2.9518 -5.2168 1.0298 32 1 4.0547 -3.2601 -0.6827 33 1 5.4985 -2.6509 -1.6391 34 1 7.5432 -1.8971 -2.7721 35 1 9.7401 -2.2305 -1.7170 36 1 9.9100 -3.3176 0.4795 37 1 7.9888 -5.1575 1.8545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038068474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:58 Heat of formation + Delta-G solvation = -14.838535 kcal Electronic energy + Delta-G solvation = -21164.765573 eV Core-core repulsion = 17908.389351 eV Total energy + Delta-G solvation = -3256.376221 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45383 -40.16647 -39.24320 -37.67005 -35.49437 -34.26362 -32.42994 -30.78409 -29.96539 -29.01537 -25.40488 -25.01526 -23.76671 -23.06327 -21.60563 -20.97060 -19.62924 -18.84660 -18.21568 -17.34369 -17.11648 -16.68411 -16.16983 -16.08259 -15.99610 -15.63878 -15.20241 -15.11674 -14.69950 -14.26798 -13.66731 -13.40603 -13.25810 -13.11664 -12.98032 -12.69587 -12.65496 -12.58257 -12.36227 -11.86784 -11.74533 -11.63656 -11.19276 -10.86581 -10.69929 -10.19222 -9.93185 -9.66126 -8.89867 -7.88639 -5.20126 -0.21313 0.26399 1.41840 1.44341 1.51683 1.86066 2.19086 2.46161 2.75292 3.24898 3.33263 3.42241 3.70150 3.83108 3.92989 4.10384 4.14112 4.32789 4.36822 4.42265 4.61412 4.67225 4.75378 4.87604 4.89386 5.04951 5.08388 5.23701 5.31239 5.32318 5.42987 5.43874 5.58361 5.73865 5.79691 5.96670 6.53057 6.80585 6.93212 7.20055 7.63146 8.62965 9.28906 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016424 B = 0.005703 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.415628 B = 4908.632360 C = 6011.153006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.276 1.276 7 C -0.208 4.208 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.134 4.134 12 C 0.133 3.867 13 H 0.072 0.928 14 C 0.131 3.869 15 N -0.709 5.709 16 C 0.547 3.453 17 O -0.571 6.571 18 C -0.192 4.192 19 C -0.077 4.077 20 C -0.137 4.137 21 C -0.068 4.068 22 C -0.158 4.158 23 C 0.146 3.854 24 O -0.498 6.498 25 H 0.246 0.754 26 H 0.035 0.965 27 H 0.025 0.975 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.406 0.594 33 H 0.134 0.866 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.157 0.843 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.778 -9.761 -5.644 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.795 3.205 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.336 4.336 8 H 0.101 0.899 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.173 4.173 12 C 0.027 3.973 13 H 0.089 0.911 14 C 0.006 3.994 15 N -0.359 5.359 16 C 0.336 3.664 17 O -0.452 6.452 18 C -0.195 4.195 19 C -0.096 4.096 20 C -0.154 4.154 21 C -0.086 4.086 22 C -0.177 4.177 23 C 0.100 3.900 24 O -0.310 6.310 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.242 0.758 33 H 0.151 0.849 34 H 0.177 0.823 35 H 0.186 0.814 36 H 0.174 0.826 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 15.792 -9.241 -4.649 18.878 hybrid contribution -0.213 0.939 -0.333 1.019 sum 15.579 -8.302 -4.982 18.342 Atomic orbital electron populations 1.70006 1.06237 1.25230 1.58726 1.25505 0.96422 1.00434 1.03819 0.85254 0.77509 0.80074 0.77641 1.20724 1.22519 1.20180 1.19167 0.90432 0.82561 1.41447 0.89853 1.45979 1.03695 0.99964 1.85909 1.22053 0.87712 0.92058 0.96439 1.23487 0.95683 0.98199 0.99903 1.22589 0.92888 0.84848 0.97022 0.91082 1.21618 0.83208 0.98990 0.95542 1.45885 1.05666 1.60873 1.23503 1.18555 0.84087 0.78785 0.84953 1.90727 1.87523 1.45223 1.21727 1.20498 0.93264 1.08093 0.97674 1.21498 1.00684 0.94944 0.92484 1.21508 0.91610 1.00495 1.01810 1.21685 0.99073 0.94166 0.93640 1.21713 0.98046 1.01861 0.96035 1.18835 0.91269 0.95418 0.84482 1.84710 1.95346 1.26364 1.24614 0.94532 0.94622 0.95719 0.88015 0.90415 0.94303 0.90108 0.75795 0.84861 0.82290 0.81354 0.82566 0.73490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.50 11.51 21.65 0.25 -57.25 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 3 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.21 -11.24 10.55 84.03 0.89 -10.35 16 8 H 0.08 4.33 7.50 -2.91 -0.02 4.30 16 9 N -0.63 -30.63 3.65 -713.85 -2.61 -33.24 16 10 C 0.14 6.55 7.39 83.18 0.61 7.16 16 11 C -0.13 -4.64 8.03 30.94 0.25 -4.39 16 12 C 0.13 4.91 4.10 41.80 0.17 5.09 16 13 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 14 C 0.13 4.76 5.52 86.38 0.48 5.24 16 15 N -0.71 -24.79 5.28 -466.26 -2.46 -27.25 16 16 C 0.55 20.03 7.76 86.69 0.67 20.70 16 17 O -0.57 -24.25 15.16 16.91 0.26 -24.00 16 18 C -0.19 -5.77 5.89 -20.01 -0.12 -5.89 16 19 C -0.08 -1.89 9.54 22.52 0.21 -1.67 16 20 C -0.14 -2.44 10.02 22.24 0.22 -2.22 16 21 C -0.07 -1.04 10.03 22.30 0.22 -0.81 16 22 C -0.16 -3.03 9.98 22.34 0.22 -2.81 16 23 C 0.15 3.96 6.72 22.85 0.15 4.11 16 24 O -0.50 -14.24 11.58 -68.74 -0.80 -15.04 16 25 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 26 H 0.04 1.88 7.12 -2.38 -0.02 1.86 16 27 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.08 2.75 8.12 -2.39 -0.02 2.73 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.41 13.24 6.40 -92.71 -0.59 12.64 16 33 H 0.13 3.10 6.40 -2.91 -0.02 3.09 16 34 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.41 8.20 9.06 -74.06 -0.67 7.53 16 Total: -1.00 -75.37 316.90 0.97 -74.40 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.16 Total: 23.49 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 4.46 Total: 10.71 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -4.82 Total: -117.74 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.54 Total: -39.03 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -75.37 0.97 -74.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038068474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.566 kcal (2) G-P(sol) polarization free energy of solvation -75.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds