Wall clock time and date at job start Mon Mar 30 2020 01:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38853 * 119.98447 * 359.72552 * 3 2 1 5 5 C 1.38253 * 120.25001 * 179.76391 * 4 3 2 6 6 C 1.37997 * 120.21086 * 0.51239 * 5 4 3 7 7 C 1.39617 * 119.95799 * 359.74186 * 6 5 4 8 8 C 1.47740 * 120.12411 * 180.02562 * 7 6 5 9 9 O 1.21470 * 120.00162 * 179.97438 * 8 7 6 10 10 O 1.34717 * 119.99827 * 359.97438 * 8 7 6 11 11 C 1.45193 * 117.00049 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47091 * 30.00345 * 11 10 8 13 13 C 1.50704 * 109.47052 * 150.00302 * 11 10 8 14 14 H 1.07996 * 119.99660 * 0.02562 * 13 11 10 15 15 C 1.37880 * 119.99550 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00370 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99373 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47637 * 59.99753 * 17 15 13 19 19 H 1.48504 * 109.47117 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47007 * 299.99266 * 17 15 13 21 21 C 1.53002 * 109.47256 * 270.00424 * 11 10 8 22 22 C 1.53000 * 117.49813 * 128.74562 * 21 11 10 23 23 C 1.52999 * 117.50054 * 60.08798 * 21 11 10 24 24 C 1.38437 * 119.97641 * 179.97438 * 3 2 1 25 25 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 27 27 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 28 28 H 1.08006 * 119.87795 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.89837 * 180.23726 * 5 4 3 30 30 H 1.07997 * 120.02148 * 179.76798 * 6 5 4 31 31 H 0.97000 * 120.00057 * 179.97438 * 16 15 13 32 32 H 1.09004 * 115.55025 * 274.41644 * 21 11 10 33 33 H 1.09002 * 117.50064 * 0.02562 * 22 21 11 34 34 H 1.09003 * 117.49608 * 145.02419 * 22 21 11 35 35 H 1.08996 * 117.50345 * 214.98277 * 23 21 11 36 36 H 1.09005 * 117.49680 * 359.97438 * 23 21 11 37 37 H 1.07997 * 120.11128 * 359.96222 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2893 2.3753 -0.0058 5 6 1.9112 3.6101 -0.0009 6 6 3.2886 3.6939 -0.0009 7 6 4.0580 2.5288 -0.0004 8 6 5.5329 2.6143 0.0001 9 8 6.2001 1.5992 0.0010 10 8 6.1378 3.8180 -0.0003 11 6 7.5898 3.8260 -0.0003 12 1 7.9580 2.9379 -0.5139 13 6 8.0853 5.0591 -0.7112 14 1 7.3795 5.7661 -1.1215 15 6 9.4396 5.2844 -0.8376 16 7 10.2990 4.4237 -0.3376 17 14 10.0537 6.8131 -1.7181 18 1 9.5526 8.0229 -1.0177 19 1 11.5388 6.8207 -1.7194 20 1 9.5583 6.8107 -3.1180 21 6 8.0998 3.8294 1.4422 22 6 9.1419 2.7768 1.8254 23 6 7.7038 2.6511 2.3342 24 6 3.4285 1.2830 0.0005 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2109 2.3161 -0.0098 29 1 1.3171 4.5120 -0.0015 30 1 3.7711 4.6601 -0.0009 31 1 11.2518 4.5820 -0.4269 32 1 8.1796 4.8105 1.9103 33 1 9.4645 2.0822 1.0498 34 1 9.9072 3.0653 2.5460 35 1 7.5234 2.8569 3.3893 36 1 7.0795 1.8737 1.8935 37 1 4.0181 0.3782 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123463742.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:36 Heat of formation + Delta-G solvation = -87.981024 kcal Electronic energy + Delta-G solvation = -20983.433779 eV Core-core repulsion = 17691.593110 eV Total energy + Delta-G solvation = -3291.840669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66231 -40.79824 -38.60451 -37.86699 -36.73574 -34.71352 -32.40153 -31.47081 -29.80489 -28.14747 -25.88307 -24.64034 -23.43046 -23.09520 -22.00501 -21.11871 -19.69635 -18.59583 -18.22274 -17.23149 -17.15331 -16.92111 -16.73002 -16.63385 -16.39910 -15.72260 -14.95201 -14.74160 -14.53971 -14.48253 -13.63181 -13.60852 -13.26105 -13.13192 -12.96627 -12.78212 -12.76848 -12.30276 -12.16997 -12.02348 -11.96736 -11.80759 -11.51829 -11.28173 -10.95724 -10.62290 -10.45088 -10.15227 -9.31512 -8.21037 -6.38636 -0.36541 0.35460 1.43174 1.46756 1.53694 1.58544 1.79428 2.36422 2.50576 2.74301 3.06190 3.20909 3.73994 3.78510 4.03654 4.08422 4.16686 4.26126 4.28511 4.40279 4.45441 4.46185 4.47209 4.71529 4.77404 4.78653 4.84683 5.09588 5.15429 5.23158 5.31897 5.33248 5.38098 5.46561 5.53678 5.61451 5.81762 6.09655 6.38127 6.63308 6.93567 7.30659 8.85311 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027482 B = 0.004292 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.609789 B = 6522.518777 C = 7130.351337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.113 3.887 4 C -0.163 4.163 5 C -0.080 4.080 6 C -0.105 4.105 7 C -0.100 4.100 8 C 0.493 3.507 9 O -0.544 6.544 10 O -0.350 6.350 11 C 0.254 3.746 12 H 0.006 0.994 13 C -0.557 4.557 14 H 0.066 0.934 15 C 0.025 3.975 16 N -0.895 5.895 17 Si 0.977 3.023 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.271 1.271 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.203 4.203 24 C -0.113 4.113 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.174 0.826 29 H 0.174 0.826 30 H 0.139 0.861 31 H 0.268 0.732 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.248 -2.686 2.304 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.251 6.251 3 C 0.067 3.933 4 C -0.181 4.181 5 C -0.097 4.097 6 C -0.124 4.124 7 C -0.101 4.101 8 C 0.340 3.660 9 O -0.437 6.437 10 O -0.266 6.266 11 C 0.201 3.799 12 H 0.024 0.976 13 C -0.595 4.595 14 H 0.084 0.916 15 C -0.177 4.177 16 N -0.531 5.531 17 Si 0.800 3.200 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.196 1.196 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.240 4.240 24 C -0.132 4.132 25 H 0.135 0.865 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.192 0.808 29 H 0.192 0.808 30 H 0.157 0.843 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.731 -3.192 2.333 20.123 hybrid contribution 1.045 0.374 -0.459 1.201 sum -18.686 -2.817 1.875 18.990 Atomic orbital electron populations 1.23451 0.75703 1.05884 1.02877 1.86086 1.24088 1.26141 1.88738 1.18757 0.90913 0.85890 0.97703 1.21893 1.02066 0.91003 1.03122 1.21358 0.92918 0.99031 0.96434 1.21609 0.95110 0.97466 0.98208 1.18945 0.88174 0.95382 1.07578 1.21745 0.90154 0.82082 0.72066 1.90712 1.67569 1.37673 1.47761 1.86515 1.26847 1.31121 1.82098 1.19920 0.70532 0.97230 0.92250 0.97612 1.21141 0.92643 1.07263 1.38417 0.91556 1.25739 0.96003 1.00180 0.95763 1.70157 1.02459 1.36519 1.43957 0.85336 0.77010 0.78778 0.78839 1.18972 1.20401 1.19636 1.22431 1.04029 0.93061 0.95493 1.22284 0.90930 1.01256 1.01262 1.23265 0.99473 1.01689 0.99586 1.20355 0.93025 0.96858 1.02976 0.86450 0.90910 0.90977 0.80834 0.80837 0.84298 0.92338 0.89838 0.91738 0.89003 0.87758 0.90051 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -7.45 10.49 -92.59 -0.97 -8.42 16 3 C 0.11 2.80 6.68 22.46 0.15 2.95 16 4 C -0.16 -2.91 9.03 22.42 0.20 -2.71 16 5 C -0.08 -1.54 10.03 22.22 0.22 -1.32 16 6 C -0.11 -3.01 9.61 22.55 0.22 -2.80 16 7 C -0.10 -3.58 5.87 -20.11 -0.12 -3.70 16 8 C 0.49 22.72 7.12 70.33 0.50 23.22 16 9 O -0.54 -27.91 13.43 19.93 0.27 -27.64 16 10 O -0.35 -17.55 9.09 -56.27 -0.51 -18.06 16 11 C 0.25 14.16 2.25 29.85 0.07 14.23 16 12 H 0.01 0.39 6.92 -2.39 -0.02 0.37 16 13 C -0.56 -31.94 8.88 25.60 0.23 -31.71 16 14 H 0.07 3.72 7.81 -2.91 -0.02 3.69 16 15 C 0.03 1.40 5.30 84.66 0.45 1.85 16 16 N -0.90 -50.87 11.43 21.45 0.25 -50.63 16 17 Si 0.98 43.07 29.54 68.60 2.03 45.10 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 21 C -0.13 -6.72 4.47 -10.79 -0.05 -6.77 16 22 C -0.12 -5.77 9.04 30.62 0.28 -5.50 16 23 C -0.20 -9.11 9.80 30.62 0.30 -8.81 16 24 C -0.11 -3.69 9.53 22.64 0.22 -3.47 16 25 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.07 0.54 7.67 -2.39 -0.02 0.52 16 27 H 0.07 0.54 7.64 -2.39 -0.02 0.52 16 28 H 0.17 1.61 6.28 -2.91 -0.02 1.59 16 29 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.14 4.04 7.61 -2.91 -0.02 4.02 16 31 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.08 4.33 8.11 -2.38 -0.02 4.31 16 33 H 0.06 3.39 8.05 -2.39 -0.02 3.37 16 34 H 0.09 4.03 8.14 -2.39 -0.02 4.01 16 35 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 36 H 0.08 3.89 5.36 -2.38 -0.01 3.87 16 37 H 0.12 4.39 7.65 -2.91 -0.02 4.37 16 Total: -1.00 -70.64 316.64 5.91 -64.73 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.08 Total: 18.19 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 3.77 Total: -23.27 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.25 Total: -50.63 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -1.22 Total: -54.12 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.64 5.91 -64.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463742.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.251 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds