Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86801 * 120.00372 * 2 1 4 4 H 1.48499 * 109.46670 * 269.99940 * 3 2 1 5 5 H 1.48504 * 109.46995 * 29.99351 * 3 2 1 6 6 H 1.48496 * 109.47491 * 149.99634 * 3 2 1 7 7 C 1.38649 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99914 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00275 * 0.02562 * 7 2 1 10 10 C 1.35760 * 116.99828 * 185.05545 * 9 7 2 11 11 C 1.38878 * 120.06871 * 354.45579 * 10 9 7 12 12 C 1.38095 * 119.92880 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.07013 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93318 * 179.97438 * 13 12 11 15 15 N 1.46906 * 109.47241 * 89.99751 * 14 13 12 16 16 C 1.47480 * 110.99861 * 265.97598 * 15 14 13 17 17 C 1.53510 * 87.92789 * 221.29634 * 16 15 14 18 18 C 1.50698 * 114.17104 * 272.37510 * 17 16 15 19 19 N 1.34781 * 120.00399 * 273.84561 * 18 17 16 20 20 O 1.21283 * 119.99886 * 93.84178 * 18 17 16 21 21 C 1.47474 * 110.99716 * 170.00028 * 15 14 13 22 22 C 1.38303 * 120.13864 * 0.02562 * 13 12 11 23 23 C 1.38096 * 120.06924 * 359.97438 * 22 13 12 24 24 H 0.97005 * 119.99589 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.03617 * 0.02562 * 11 10 9 26 26 H 1.08000 * 119.96563 * 179.72627 * 12 11 10 27 27 H 1.09000 * 109.47509 * 210.00180 * 14 13 12 28 28 H 1.08999 * 109.47159 * 330.00105 * 14 13 12 29 29 H 1.09005 * 113.47482 * 336.05943 * 16 15 14 30 30 H 1.08998 * 113.47549 * 106.53112 * 16 15 14 31 31 H 1.09002 * 114.17090 * 139.67072 * 17 16 15 32 32 H 0.97003 * 119.99376 * 359.97438 * 19 18 17 33 33 H 0.97001 * 120.00295 * 180.02562 * 19 18 17 34 34 H 1.09000 * 113.47836 * 253.46689 * 21 15 14 35 35 H 1.08994 * 113.48220 * 23.94018 * 21 15 14 36 36 H 1.08002 * 119.96469 * 179.97438 * 22 13 12 37 37 H 1.08001 * 120.03848 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0462 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7001 7 6 2.0087 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3345 -2.3684 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4570 -3.4396 0.0950 12 6 4.2021 -4.5972 0.2036 13 6 3.5683 -5.8204 0.3244 14 6 4.3844 -7.0818 0.4422 15 7 4.6560 -7.3589 1.8591 16 6 5.9575 -6.7980 2.2672 17 6 6.2007 -8.0878 3.0634 18 6 5.6571 -8.0573 4.4686 19 7 6.4011 -7.5434 5.4681 20 8 4.5500 -8.4950 4.7002 21 6 5.2429 -8.7007 2.0321 22 6 2.1870 -5.8886 0.3363 23 6 1.4363 -4.7346 0.2280 24 1 -0.4850 0.8401 -0.0004 25 1 3.9525 -2.4847 0.0003 26 1 5.2808 -4.5477 0.1894 27 1 3.8307 -7.9147 0.0087 28 1 5.3270 -6.9558 -0.0905 29 1 6.6513 -6.6626 1.4375 30 1 5.8705 -5.9106 2.8941 31 1 7.2220 -8.4639 3.0028 32 1 7.2867 -7.1936 5.2829 33 1 6.0514 -7.5241 6.3726 34 1 4.5504 -9.4257 2.4598 35 1 5.7461 -9.0730 1.1398 36 1 1.6949 -6.8455 0.4303 37 1 0.3576 -4.7884 0.2377 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137120521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = -0.860783 kcal Electronic energy + Delta-G solvation = -20458.463009 eV Core-core repulsion = 17202.692908 eV Total energy + Delta-G solvation = -3255.770100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93671 -39.00121 -38.23618 -36.42699 -33.78680 -32.44193 -31.50026 -30.11392 -28.20263 -26.07714 -25.50856 -24.26396 -22.17178 -21.88134 -20.37172 -19.45634 -17.93295 -17.34717 -17.18960 -16.82475 -16.02221 -15.38758 -14.98640 -14.53028 -14.48655 -14.29571 -13.82433 -13.60822 -13.47595 -12.96741 -12.70661 -12.61989 -12.20400 -11.97242 -11.67016 -11.34570 -11.15211 -10.91528 -10.66771 -10.58417 -10.48835 -10.39015 -10.01929 -9.83398 -9.28987 -8.85929 -8.76106 -8.11245 -7.12355 -6.41763 -4.00616 2.28493 2.34337 2.49475 3.13656 3.14666 3.19590 3.28346 3.98483 4.01523 4.14260 4.52929 4.66681 4.91294 5.02091 5.10686 5.16838 5.25007 5.32836 5.37902 5.47115 5.63478 5.73363 5.76829 5.85137 5.90127 6.23691 6.31091 6.50606 6.61227 6.76124 6.93554 7.02206 7.10869 7.18492 7.31601 7.44501 7.48789 7.88657 8.03396 8.15833 9.03846 9.75260 10.76495 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.003576 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.306420 B = 7827.123645 C = 8263.025177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.155 3.845 11 C -0.235 4.235 12 C -0.064 4.064 13 C -0.174 4.174 14 C 0.076 3.924 15 N -0.453 5.453 16 C 0.017 3.983 17 C -0.152 4.152 18 C 0.542 3.458 19 N -0.858 5.858 20 O -0.525 6.525 21 C 0.016 3.984 22 C -0.054 4.054 23 C -0.193 4.193 24 H 0.269 0.731 25 H 0.125 0.875 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.400 0.600 33 H 0.401 0.599 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.272 -13.806 4.846 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.083 6.083 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.083 4.083 13 C -0.175 4.175 14 C -0.052 4.052 15 N -0.175 5.175 16 C -0.112 4.112 17 C -0.174 4.174 18 C 0.326 3.674 19 N -0.422 5.422 20 O -0.399 6.399 21 C -0.114 4.114 22 C -0.073 4.073 23 C -0.212 4.212 24 H 0.079 0.921 25 H 0.143 0.857 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.228 0.772 33 H 0.232 0.768 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.438 -13.725 5.088 20.560 hybrid contribution 1.610 0.953 -0.221 1.884 sum 16.048 -12.772 4.866 21.079 Atomic orbital electron populations 1.70046 1.05943 1.27587 1.46268 1.25281 0.95832 0.98790 0.96642 0.85722 0.78905 0.80184 0.78657 1.19916 1.20256 1.19252 1.21314 0.91752 0.80899 1.52822 0.89157 1.83984 1.34327 1.11440 1.78527 1.19389 0.90281 0.88031 0.92136 1.21098 0.93834 0.98730 1.11746 1.20520 0.97832 0.91904 0.98043 1.18980 0.93513 0.93268 1.11727 1.21422 0.98351 0.96664 0.88716 1.69222 1.24616 1.04011 1.19667 1.23804 0.92251 0.96606 0.98567 1.22630 1.00929 1.00997 0.92834 1.19771 0.84768 0.76658 0.86165 1.43808 1.21109 1.65870 1.11397 1.90763 1.19428 1.45862 1.83852 1.23693 0.96214 0.95008 0.96461 1.20462 0.92886 0.96727 0.97242 1.20214 0.99572 0.90347 1.11085 0.92064 0.85708 0.88121 0.90741 0.93707 0.90317 0.89450 0.87656 0.77238 0.76801 0.88494 0.90799 0.87152 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.39 -11.15 9.49 30.88 0.29 -10.86 16 8 H 0.09 2.38 5.20 -52.48 -0.27 2.10 16 9 O -0.18 -5.26 9.76 0.02 0.00 -5.26 16 10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.23 -5.22 9.17 -39.40 -0.36 -5.58 16 12 C -0.06 -1.19 9.69 -39.61 -0.38 -1.58 16 13 C -0.17 -3.08 5.47 -104.58 -0.57 -3.65 16 14 C 0.08 1.04 4.94 -4.97 -0.02 1.02 16 15 N -0.45 -6.17 6.21 -246.08 -1.53 -7.70 16 16 C 0.02 0.18 7.28 -7.54 -0.05 0.13 16 17 C -0.15 -1.37 4.56 -91.24 -0.42 -1.78 16 18 C 0.54 6.15 7.55 -10.98 -0.08 6.07 16 19 N -0.86 -6.18 8.87 31.22 0.28 -5.90 16 20 O -0.52 -8.57 16.81 5.55 0.09 -8.48 16 21 C 0.02 0.16 7.01 -7.54 -0.05 0.11 16 22 C -0.05 -1.04 9.69 -39.61 -0.38 -1.43 16 23 C -0.19 -4.29 9.99 -39.40 -0.39 -4.69 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 26 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.07 0.95 8.02 -51.93 -0.42 0.54 16 28 H 0.04 0.53 7.24 -51.93 -0.38 0.15 16 29 H 0.08 0.68 7.42 -51.93 -0.39 0.29 16 30 H 0.09 1.02 8.11 -51.93 -0.42 0.59 16 31 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.40 1.58 8.83 -40.82 -0.36 1.22 16 33 H 0.40 2.65 8.93 -40.82 -0.36 2.28 16 34 H 0.10 1.18 7.51 -51.93 -0.39 0.79 16 35 H 0.07 0.60 7.91 -51.93 -0.41 0.19 16 36 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -35.34 318.62 -7.93 -43.27 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.52 Total: 6.15 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.79 Total: -17.63 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.49 Total: -38.58 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.34 -7.93 -43.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137120521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.407 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds