Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86801 * 120.00372 * 2 1 4 4 H 1.48499 * 109.46670 * 269.99940 * 3 2 1 5 5 H 1.48504 * 109.46995 * 29.99351 * 3 2 1 6 6 H 1.48496 * 109.47491 * 149.99634 * 3 2 1 7 7 C 1.38649 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99914 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00275 * 0.02562 * 7 2 1 10 10 C 1.35760 * 116.99828 * 185.05545 * 9 7 2 11 11 C 1.38878 * 120.06871 * 354.45579 * 10 9 7 12 12 C 1.38095 * 119.92880 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.07013 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93318 * 179.97438 * 13 12 11 15 15 N 1.46906 * 109.47241 * 89.99751 * 14 13 12 16 16 C 1.47480 * 110.99861 * 265.97598 * 15 14 13 17 17 C 1.53510 * 87.92789 * 221.29634 * 16 15 14 18 18 C 1.50698 * 114.17104 * 272.37510 * 17 16 15 19 19 N 1.34781 * 120.00399 * 273.84561 * 18 17 16 20 20 O 1.21283 * 119.99886 * 93.84178 * 18 17 16 21 21 C 1.47474 * 110.99716 * 170.00028 * 15 14 13 22 22 C 1.38303 * 120.13864 * 0.02562 * 13 12 11 23 23 C 1.38096 * 120.06924 * 359.97438 * 22 13 12 24 24 H 0.97005 * 119.99589 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.03617 * 0.02562 * 11 10 9 26 26 H 1.08000 * 119.96563 * 179.72627 * 12 11 10 27 27 H 1.09000 * 109.47509 * 210.00180 * 14 13 12 28 28 H 1.08999 * 109.47159 * 330.00105 * 14 13 12 29 29 H 1.09005 * 113.47482 * 336.05943 * 16 15 14 30 30 H 1.08998 * 113.47549 * 106.53112 * 16 15 14 31 31 H 1.09002 * 114.17090 * 139.67072 * 17 16 15 32 32 H 0.97003 * 119.99376 * 359.97438 * 19 18 17 33 33 H 0.97001 * 120.00295 * 180.02562 * 19 18 17 34 34 H 1.09000 * 113.47836 * 253.46689 * 21 15 14 35 35 H 1.08994 * 113.48220 * 23.94018 * 21 15 14 36 36 H 1.08002 * 119.96469 * 179.97438 * 22 13 12 37 37 H 1.08001 * 120.03848 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0462 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7001 7 6 2.0087 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3345 -2.3684 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4570 -3.4396 0.0950 12 6 4.2021 -4.5972 0.2036 13 6 3.5683 -5.8204 0.3244 14 6 4.3844 -7.0818 0.4422 15 7 4.6560 -7.3589 1.8591 16 6 5.9575 -6.7980 2.2672 17 6 6.2007 -8.0878 3.0634 18 6 5.6571 -8.0573 4.4686 19 7 6.4011 -7.5434 5.4681 20 8 4.5500 -8.4950 4.7002 21 6 5.2429 -8.7007 2.0321 22 6 2.1870 -5.8886 0.3363 23 6 1.4363 -4.7346 0.2280 24 1 -0.4850 0.8401 -0.0004 25 1 3.9525 -2.4847 0.0003 26 1 5.2808 -4.5477 0.1894 27 1 3.8307 -7.9147 0.0087 28 1 5.3270 -6.9558 -0.0905 29 1 6.6513 -6.6626 1.4375 30 1 5.8705 -5.9106 2.8941 31 1 7.2220 -8.4639 3.0028 32 1 7.2867 -7.1936 5.2829 33 1 6.0514 -7.5241 6.3726 34 1 4.5504 -9.4257 2.4598 35 1 5.7461 -9.0730 1.1398 36 1 1.6949 -6.8455 0.4303 37 1 0.3576 -4.7884 0.2377 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137120521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = -30.474286 kcal Electronic energy + Delta-G solvation = -20459.747147 eV Core-core repulsion = 17202.692908 eV Total energy + Delta-G solvation = -3257.054238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79757 -40.70496 -39.28796 -38.10781 -34.59451 -34.36728 -32.85869 -31.77726 -29.50730 -27.45146 -26.82606 -25.51898 -23.59650 -23.11371 -21.90116 -20.21438 -19.83563 -18.84688 -18.03993 -17.88841 -16.91100 -16.54001 -16.49424 -16.14932 -15.87777 -15.50183 -15.30036 -15.05646 -15.02476 -14.38259 -14.05823 -13.89101 -13.55591 -13.30058 -13.10978 -12.75973 -12.56635 -12.26146 -12.14566 -12.09165 -11.83811 -11.57567 -11.16430 -10.93370 -10.78569 -10.58788 -9.77496 -9.68208 -8.89157 -8.46800 -6.15432 0.61156 0.70015 1.34413 1.44465 1.52768 1.66694 2.18044 2.60693 2.79335 3.09031 3.33917 3.40744 3.53160 3.86642 3.97459 4.07994 4.20373 4.27541 4.33522 4.47576 4.56893 4.63126 4.67273 4.75264 4.77889 4.86996 5.02789 5.09896 5.13877 5.30397 5.44474 5.60867 5.71696 5.85163 5.95603 6.03151 6.14482 6.26633 6.55872 6.97583 7.44497 7.79546 8.76906 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.003576 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.306420 B = 7827.123645 C = 8263.025177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.236 6.236 10 C 0.112 3.888 11 C -0.242 4.242 12 C -0.059 4.059 13 C -0.149 4.149 14 C 0.079 3.921 15 N -0.497 5.497 16 C 0.018 3.982 17 C -0.137 4.137 18 C 0.531 3.469 19 N -0.839 5.839 20 O -0.587 6.587 21 C 0.018 3.982 22 C -0.057 4.057 23 C -0.209 4.209 24 H 0.272 0.728 25 H 0.120 0.880 26 H 0.144 0.856 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.152 0.848 32 H 0.418 0.582 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.697 -15.234 4.759 26.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.143 6.143 10 C 0.061 3.939 11 C -0.261 4.261 12 C -0.077 4.077 13 C -0.150 4.150 14 C -0.049 4.049 15 N -0.219 5.219 16 C -0.111 4.111 17 C -0.159 4.159 18 C 0.317 3.683 19 N -0.403 5.403 20 O -0.466 6.466 21 C -0.111 4.111 22 C -0.076 4.076 23 C -0.228 4.228 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.161 0.839 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.169 0.831 32 H 0.250 0.750 33 H 0.235 0.765 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.154 0.846 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.951 -15.192 5.018 24.801 hybrid contribution 0.372 1.041 -0.115 1.112 sum 19.323 -14.151 4.903 24.447 Atomic orbital electron populations 1.70203 1.08145 1.28781 1.49047 1.26647 0.96869 1.02858 0.95850 0.84561 0.77792 0.74343 0.79325 1.18629 1.19665 1.17500 1.21853 0.92564 0.81445 1.53205 0.88002 1.83947 1.36066 1.12647 1.81609 1.19915 0.91822 0.87760 0.94370 1.21248 0.92884 1.00166 1.11821 1.20933 0.99777 0.90688 0.96296 1.19607 0.93308 0.95162 1.06906 1.21461 0.99166 0.94342 0.89900 1.69124 1.27301 1.06405 1.19113 1.23918 0.91387 0.96367 0.99449 1.22590 1.02672 1.00010 0.90579 1.20367 0.84202 0.75948 0.87824 1.43699 1.21522 1.64090 1.10960 1.90743 1.22137 1.48823 1.84935 1.23741 0.96089 0.93115 0.98110 1.20835 0.93950 0.96496 0.96276 1.20432 0.99737 0.90886 1.11765 0.91871 0.86206 0.83869 0.89712 0.90498 0.87118 0.91030 0.83064 0.75045 0.76473 0.90919 0.87401 0.84643 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.13 13.67 21.61 0.30 -57.83 16 2 C -0.03 -1.46 5.49 84.83 0.47 -1.00 16 3 Si 1.02 43.42 29.55 68.60 2.03 45.45 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.41 -24.78 9.49 67.92 0.64 -24.14 16 8 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 9 O -0.24 -14.78 9.76 -22.85 -0.22 -15.00 16 10 C 0.11 5.83 6.65 22.58 0.15 5.98 16 11 C -0.24 -10.78 9.17 22.39 0.21 -10.58 16 12 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 13 C -0.15 -4.82 5.47 -19.83 -0.11 -4.93 16 14 C 0.08 1.78 4.94 85.56 0.42 2.21 16 15 N -0.50 -11.66 6.21 -932.46 -5.79 -17.44 16 16 C 0.02 0.29 7.28 83.58 0.61 0.90 16 17 C -0.14 -1.87 4.56 -11.20 -0.05 -1.92 16 18 C 0.53 10.88 7.55 87.66 0.66 11.54 16 19 N -0.84 -9.94 8.87 -173.53 -1.54 -11.48 16 20 O -0.59 -18.96 16.81 -3.04 -0.05 -19.01 16 21 C 0.02 0.31 7.01 83.58 0.59 0.90 16 22 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 23 C -0.21 -9.65 9.99 22.39 0.22 -9.43 16 24 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 25 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 26 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 27 H 0.08 1.78 8.02 -2.39 -0.02 1.76 16 28 H 0.08 1.29 7.24 -2.39 -0.02 1.27 16 29 H 0.11 1.13 7.42 -2.38 -0.02 1.11 16 30 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 31 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.42 1.79 8.83 -92.71 -0.82 0.97 16 33 H 0.40 4.63 8.93 -92.71 -0.83 3.80 16 34 H 0.07 1.63 7.51 -2.39 -0.02 1.61 16 35 H 0.11 1.12 7.91 -2.39 -0.02 1.11 16 36 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -84.90 318.62 -1.57 -86.47 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.53 Total: 23.02 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 4.24 Total: -34.17 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -7.03 Total: -86.75 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.27 Total: -34.01 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -84.90 -1.57 -86.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137120521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.994 kcal (2) G-P(sol) polarization free energy of solvation -84.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds