Wall clock time and date at job start Mon Mar 30 2020 02:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99768 * 2 1 4 4 H 1.48503 * 109.46906 * 239.99701 * 3 2 1 5 5 H 1.48497 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46909 * 119.99882 * 3 2 1 7 7 C 1.37872 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46736 * 180.02562 * 9 7 2 11 11 O 1.21273 * 120.00538 * 0.02562 * 10 9 7 12 12 N 1.34786 * 119.99740 * 180.02562 * 10 9 7 13 13 C 1.46497 * 119.99996 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.71818 * 34.43781 * 13 12 10 15 15 C 1.53324 * 109.68919 * 155.00054 * 13 12 10 16 16 C 1.52712 * 108.45539 * 189.54410 * 15 13 12 17 17 C 1.50731 * 110.59171 * 308.70267 * 16 15 13 18 18 N 1.32798 * 117.49313 * 197.88140 * 17 16 15 19 19 C 1.31899 * 122.34897 * 180.26164 * 18 17 16 20 20 O 1.35679 * 119.76523 * 180.02562 * 19 18 17 21 21 C 1.38933 * 120.46692 * 0.02562 * 19 18 17 22 22 C 1.38144 * 118.78349 * 359.88211 * 21 19 18 23 23 C 1.37488 * 122.35464 * 17.93849 * 17 16 15 24 24 C 1.50517 * 122.82968 * 359.25742 * 23 17 16 25 25 H 0.97002 * 120.00053 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47100 * 60.00587 * 9 7 2 27 27 H 1.08995 * 109.46953 * 299.99865 * 9 7 2 28 28 H 0.97000 * 119.99563 * 359.97438 * 12 10 9 29 29 H 1.09002 * 109.67545 * 69.79081 * 15 13 12 30 30 H 1.09004 * 109.67117 * 309.29382 * 15 13 12 31 31 H 1.09004 * 109.25770 * 68.99146 * 16 15 13 32 32 H 1.08999 * 109.25412 * 188.41620 * 16 15 13 33 33 H 0.96698 * 113.99230 * 89.99806 * 20 19 18 34 34 H 1.07999 * 120.60539 * 179.90731 * 21 19 18 35 35 H 1.08005 * 120.51137 * 180.02562 * 22 21 19 36 36 H 1.08994 * 109.25862 * 137.90199 * 24 23 17 37 37 H 1.09001 * 109.25820 * 257.38104 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 8 3.4227 -3.4229 0.0031 12 7 1.7811 -4.9153 0.0015 13 6 2.7332 -6.0288 0.0033 14 1 3.6145 -5.7582 0.5849 15 6 2.0735 -7.2714 0.6127 16 6 3.1482 -8.3361 0.8214 17 6 3.9355 -8.5501 -0.4460 18 7 4.6446 -9.6685 -0.5458 19 6 5.3719 -9.9505 -1.6094 20 8 6.0759 -11.1094 -1.6561 21 6 5.4222 -9.0692 -2.6823 22 6 4.6955 -7.8963 -2.6143 23 6 3.9374 -7.6372 -1.4741 24 6 3.1447 -6.3583 -1.4312 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 0.8275 -5.0925 0.0008 29 1 1.3082 -7.6503 -0.0647 30 1 1.6209 -7.0142 1.5705 31 1 3.8237 -8.0146 1.6141 32 1 2.6740 -9.2734 1.1124 33 1 5.5865 -11.8518 -2.0360 34 1 6.0181 -9.2972 -3.5537 35 1 4.7140 -7.1916 -3.4325 36 1 3.7531 -5.5449 -1.8264 37 1 2.2504 -6.4690 -2.0444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201396.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:41 Heat of formation + Delta-G solvation = -59.902376 kcal Electronic energy + Delta-G solvation = -20560.064486 eV Core-core repulsion = 17301.734150 eV Total energy + Delta-G solvation = -3258.330336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00283 -39.06639 -37.80632 -35.94510 -33.58021 -32.93214 -32.74918 -30.13825 -29.44299 -27.97244 -24.43178 -23.83937 -22.78616 -22.64568 -20.22427 -19.66352 -18.60715 -17.21052 -16.46980 -16.11347 -16.03812 -15.80964 -14.99605 -14.48901 -14.35009 -14.12901 -14.09952 -13.68959 -13.36955 -13.04121 -12.79296 -12.45154 -12.17050 -12.07029 -11.77048 -11.58290 -11.28464 -10.98583 -10.94580 -10.77435 -10.59352 -9.96637 -9.86171 -9.56980 -9.29663 -8.78238 -8.66990 -8.53920 -8.42143 -6.06729 -4.06291 0.80921 1.01231 3.21810 3.36754 3.38978 3.44146 3.53451 3.67657 3.78191 4.28359 4.47063 4.56875 4.68412 4.71991 4.79451 4.99277 5.12845 5.24348 5.31597 5.39075 5.43221 5.47246 5.69833 5.71840 5.77489 5.86899 6.01843 6.10231 6.19930 6.37156 6.42254 7.02096 7.17726 7.24603 7.31650 7.74765 7.94801 8.04296 8.42460 9.04377 9.21069 9.58974 11.05605 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.038273 B = 0.003297 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.406955 B = 8489.541051 C = 8891.950849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.005 3.995 10 C 0.515 3.485 11 O -0.544 6.544 12 N -0.744 5.744 13 C 0.145 3.855 14 H 0.089 0.911 15 C -0.126 4.126 16 C -0.064 4.064 17 C 0.156 3.844 18 N -0.507 5.507 19 C 0.306 3.694 20 O -0.484 6.484 21 C -0.188 4.188 22 C -0.060 4.060 23 C -0.121 4.121 24 C -0.090 4.090 25 H 0.262 0.738 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.397 0.603 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.397 0.603 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.426 -20.833 -4.193 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.092 0.908 9 C -0.034 4.034 10 C 0.305 3.695 11 O -0.420 6.420 12 N -0.398 5.398 13 C 0.039 3.961 14 H 0.107 0.893 15 C -0.165 4.165 16 C -0.103 4.103 17 C 0.021 3.979 18 N -0.226 5.226 19 C 0.125 3.875 20 O -0.290 6.290 21 C -0.209 4.209 22 C -0.086 4.086 23 C -0.124 4.124 24 C -0.128 4.128 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.231 0.769 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.254 0.746 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.105 0.895 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.621 -20.806 -3.277 21.563 hybrid contribution -0.248 0.918 -1.052 1.418 sum 4.373 -19.888 -4.329 20.818 Atomic orbital electron populations 1.69946 1.06037 1.27024 1.51109 1.25002 0.94901 0.99466 0.95209 0.86494 0.79392 0.82315 0.78876 1.20139 1.21368 1.20110 1.21132 0.94225 0.89172 1.50217 0.90759 1.19234 0.94151 0.90554 0.99457 1.22047 0.91111 0.83440 0.72875 1.90537 1.18041 1.84591 1.48819 1.46353 1.09299 1.05657 1.78474 1.20751 0.94033 0.86298 0.94995 0.89307 1.21872 0.97823 0.94381 1.02394 1.20339 0.96566 1.00046 0.93311 1.20786 0.93678 0.88010 0.95459 1.66948 1.07795 1.21557 1.26340 1.18994 0.90974 0.88459 0.89097 1.84799 1.39677 1.18949 1.85615 1.22049 1.02667 0.96452 0.99773 1.21578 0.93491 0.95992 0.97544 1.20513 0.99591 0.97547 0.94750 1.20894 0.99578 0.93390 0.98985 0.92849 0.93479 0.93455 0.76941 0.90904 0.89786 0.89305 0.89240 0.74563 0.84266 0.84158 0.89523 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.58 8.92 -34.44 -0.31 -14.89 16 8 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 9 C 0.01 0.13 5.46 -29.03 -0.16 -0.03 16 10 C 0.52 11.17 7.80 -10.98 -0.09 11.09 16 11 O -0.54 -13.69 15.12 5.56 0.08 -13.60 16 12 N -0.74 -11.71 5.09 -53.73 -0.27 -11.98 16 13 C 0.14 1.97 2.49 -67.85 -0.17 1.80 16 14 H 0.09 1.43 7.53 -51.93 -0.39 1.04 16 15 C -0.13 -1.26 5.45 -26.71 -0.15 -1.41 16 16 C -0.06 -0.66 5.91 -28.02 -0.17 -0.83 16 17 C 0.16 1.92 6.62 -82.43 -0.55 1.37 16 18 N -0.51 -6.66 10.21 -9.58 -0.10 -6.75 16 19 C 0.31 3.57 7.75 -17.27 -0.13 3.44 16 20 O -0.48 -4.75 13.56 -18.74 -0.25 -5.00 16 21 C -0.19 -1.91 10.06 -39.36 -0.40 -2.31 16 22 C -0.06 -0.64 9.74 -39.20 -0.38 -1.03 16 23 C -0.12 -1.46 5.74 -104.57 -0.60 -2.06 16 24 C -0.09 -1.14 5.28 -28.06 -0.15 -1.29 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.40 5.17 8.61 -40.82 -0.35 4.81 16 29 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 1.78 9.06 45.56 0.41 2.19 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 36 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -34.69 316.28 -7.44 -42.13 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -4.04 Total: 3.58 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.33 Total: -4.68 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.37 Total: -44.17 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.17 Total: -18.61 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.69 -7.44 -42.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201396.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.772 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds