Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99768 * 2 1 4 4 H 1.48503 * 109.46906 * 239.99701 * 3 2 1 5 5 H 1.48497 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46909 * 119.99882 * 3 2 1 7 7 C 1.37872 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46736 * 180.02562 * 9 7 2 11 11 O 1.21273 * 120.00538 * 0.02562 * 10 9 7 12 12 N 1.34786 * 119.99740 * 180.02562 * 10 9 7 13 13 C 1.46497 * 119.99996 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.71818 * 34.43781 * 13 12 10 15 15 C 1.53324 * 109.68919 * 155.00054 * 13 12 10 16 16 C 1.52712 * 108.45539 * 189.54410 * 15 13 12 17 17 C 1.50731 * 110.59171 * 308.70267 * 16 15 13 18 18 N 1.32798 * 117.49313 * 197.88140 * 17 16 15 19 19 C 1.31899 * 122.34897 * 180.26164 * 18 17 16 20 20 O 1.35679 * 119.76523 * 180.02562 * 19 18 17 21 21 C 1.38933 * 120.46692 * 0.02562 * 19 18 17 22 22 C 1.38144 * 118.78349 * 359.88211 * 21 19 18 23 23 C 1.37488 * 122.35464 * 17.93849 * 17 16 15 24 24 C 1.50517 * 122.82968 * 359.25742 * 23 17 16 25 25 H 0.97002 * 120.00053 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47100 * 60.00587 * 9 7 2 27 27 H 1.08995 * 109.46953 * 299.99865 * 9 7 2 28 28 H 0.97000 * 119.99563 * 359.97438 * 12 10 9 29 29 H 1.09002 * 109.67545 * 69.79081 * 15 13 12 30 30 H 1.09004 * 109.67117 * 309.29382 * 15 13 12 31 31 H 1.09004 * 109.25770 * 68.99146 * 16 15 13 32 32 H 1.08999 * 109.25412 * 188.41620 * 16 15 13 33 33 H 0.96698 * 113.99230 * 89.99806 * 20 19 18 34 34 H 1.07999 * 120.60539 * 179.90731 * 21 19 18 35 35 H 1.08005 * 120.51137 * 180.02562 * 22 21 19 36 36 H 1.08994 * 109.25862 * 137.90199 * 24 23 17 37 37 H 1.09001 * 109.25820 * 257.38104 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 8 3.4227 -3.4229 0.0031 12 7 1.7811 -4.9153 0.0015 13 6 2.7332 -6.0288 0.0033 14 1 3.6145 -5.7582 0.5849 15 6 2.0735 -7.2714 0.6127 16 6 3.1482 -8.3361 0.8214 17 6 3.9355 -8.5501 -0.4460 18 7 4.6446 -9.6685 -0.5458 19 6 5.3719 -9.9505 -1.6094 20 8 6.0759 -11.1094 -1.6561 21 6 5.4222 -9.0692 -2.6823 22 6 4.6955 -7.8963 -2.6143 23 6 3.9374 -7.6372 -1.4741 24 6 3.1447 -6.3583 -1.4312 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 0.8275 -5.0925 0.0008 29 1 1.3082 -7.6503 -0.0647 30 1 1.6209 -7.0142 1.5705 31 1 3.8237 -8.0146 1.6141 32 1 2.6740 -9.2734 1.1124 33 1 5.5865 -11.8518 -2.0360 34 1 6.0181 -9.2972 -3.5537 35 1 4.7140 -7.1916 -3.4325 36 1 3.7531 -5.5449 -1.8264 37 1 2.2504 -6.4690 -2.0444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201396.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = -87.410153 kcal Electronic energy + Delta-G solvation = -20561.257312 eV Core-core repulsion = 17301.734150 eV Total energy + Delta-G solvation = -3259.523163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.89446 -40.51768 -38.83154 -37.03731 -35.07190 -34.49922 -34.02259 -31.18714 -30.98879 -29.33272 -25.90470 -25.06515 -23.87049 -23.65614 -21.33509 -21.14252 -19.42800 -18.52546 -18.13096 -17.46998 -17.23650 -16.92909 -16.46574 -16.08481 -15.69685 -15.23481 -15.10485 -14.71292 -14.51890 -14.25397 -14.10782 -14.05290 -13.32797 -13.19273 -13.05243 -12.78189 -12.67224 -12.51520 -12.45693 -12.03593 -11.99519 -11.85990 -11.44325 -10.72544 -10.61049 -10.49994 -10.41316 -9.97813 -9.60954 -8.23782 -6.30441 -0.03498 0.17056 1.41084 1.43343 1.52014 1.93242 2.31641 2.45050 2.52152 2.70973 3.11835 3.47264 3.66502 3.77105 3.83084 3.87010 4.16085 4.26815 4.35398 4.43961 4.51583 4.55485 4.64657 4.79240 4.89946 4.93372 5.03450 5.11629 5.16773 5.24900 5.30927 5.31536 5.54550 5.65081 5.77001 6.09289 6.63012 6.75580 6.88655 6.91275 7.36092 7.57523 8.88031 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.038273 B = 0.003297 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.406955 B = 8489.541051 C = 8891.950849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.008 3.992 10 C 0.520 3.480 11 O -0.585 6.585 12 N -0.719 5.719 13 C 0.142 3.858 14 H 0.061 0.939 15 C -0.113 4.113 16 C -0.062 4.062 17 C 0.144 3.856 18 N -0.532 5.532 19 C 0.299 3.701 20 O -0.492 6.492 21 C -0.185 4.185 22 C -0.063 4.063 23 C -0.136 4.136 24 C -0.080 4.080 25 H 0.267 0.733 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.414 0.586 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.419 0.581 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.060 0.940 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -21.956 -4.707 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.072 0.928 9 C -0.032 4.032 10 C 0.310 3.690 11 O -0.464 6.464 12 N -0.372 5.372 13 C 0.037 3.963 14 H 0.080 0.920 15 C -0.151 4.151 16 C -0.100 4.100 17 C 0.010 3.990 18 N -0.251 5.251 19 C 0.118 3.882 20 O -0.302 6.302 21 C -0.205 4.205 22 C -0.089 4.089 23 C -0.139 4.139 24 C -0.119 4.119 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.250 0.750 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.280 0.720 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.079 0.921 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.350 -21.995 -3.800 22.741 hybrid contribution -0.156 1.151 -0.919 1.482 sum 4.194 -20.844 -4.719 21.779 Atomic orbital electron populations 1.70014 1.07054 1.28093 1.51243 1.25749 0.95819 1.02605 0.94591 0.85565 0.78407 0.78589 0.78862 1.19796 1.19932 1.19883 1.21366 0.93670 0.91439 1.51073 0.92790 1.19074 0.94306 0.90846 0.98938 1.21439 0.89751 0.84771 0.73086 1.90519 1.19291 1.85501 1.51112 1.45996 1.10711 1.04360 1.76116 1.20903 0.92931 0.86633 0.95818 0.92049 1.21807 0.97905 0.92185 1.03176 1.20364 0.96407 1.00714 0.92489 1.21042 0.93960 0.87980 0.96045 1.66974 1.08790 1.22067 1.27316 1.19283 0.90539 0.89230 0.89162 1.84747 1.40157 1.19352 1.85950 1.22288 1.02361 0.95662 1.00227 1.21841 0.92955 0.96510 0.97583 1.20485 1.00497 0.97214 0.95657 1.20728 0.99915 0.93093 0.98164 0.92417 0.93822 0.93915 0.74951 0.88830 0.88532 0.89736 0.87562 0.71985 0.81669 0.82504 0.92100 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.60 13.29 21.45 0.28 -53.31 16 2 C 0.01 0.63 5.46 84.65 0.46 1.09 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.54 -31.39 8.92 25.60 0.23 -31.16 16 8 H 0.05 3.32 6.75 -2.91 -0.02 3.30 16 9 C 0.01 0.39 5.46 29.10 0.16 0.55 16 10 C 0.52 22.91 7.80 87.66 0.68 23.59 16 11 O -0.58 -30.31 15.12 -3.01 -0.05 -30.36 16 12 N -0.72 -22.15 5.09 -442.28 -2.25 -24.41 16 13 C 0.14 3.77 2.49 45.05 0.11 3.88 16 14 H 0.06 2.01 7.53 -2.39 -0.02 1.99 16 15 C -0.11 -2.02 5.45 30.61 0.17 -1.85 16 16 C -0.06 -1.17 5.91 29.76 0.18 -1.00 16 17 C 0.14 3.39 6.62 42.25 0.28 3.67 16 18 N -0.53 -13.30 10.21 -297.25 -3.03 -16.33 16 19 C 0.30 6.51 7.75 84.85 0.66 7.16 16 20 O -0.49 -8.76 13.56 -89.97 -1.22 -9.98 16 21 C -0.18 -3.39 10.06 22.41 0.23 -3.16 16 22 C -0.06 -1.26 9.74 22.52 0.22 -1.04 16 23 C -0.14 -3.14 5.74 -19.83 -0.11 -3.26 16 24 C -0.08 -1.99 5.28 29.74 0.16 -1.84 16 25 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 26 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.41 10.09 8.61 -92.71 -0.80 9.29 16 29 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 30 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.42 2.89 9.06 -74.06 -0.67 2.22 16 34 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 37 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -75.28 316.28 -1.19 -76.47 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -0.36 Total: 14.13 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 3.41 Total: -3.36 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -5.00 Total: -94.05 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -1.27 Total: -40.34 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -75.28 -1.19 -76.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201396.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.939 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds