Wall clock time and date at job start Mon Mar 30 2020 02:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99607 * 2 1 4 4 H 1.48508 * 109.47031 * 269.99606 * 3 2 1 5 5 H 1.48501 * 109.47557 * 29.99962 * 3 2 1 6 6 H 1.48504 * 109.46837 * 150.00245 * 3 2 1 7 7 C 1.37871 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00054 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00264 * 180.02562 * 7 2 1 10 10 O 1.42895 * 109.47392 * 179.97438 * 9 7 2 11 11 C 1.36006 * 116.99715 * 180.02562 * 10 9 7 12 12 C 1.38697 * 119.98197 * 359.72137 * 11 10 9 13 13 C 1.38118 * 120.01681 * 179.76732 * 12 11 10 14 14 C 1.38865 * 119.97740 * 0.51443 * 13 12 11 15 15 N 1.39943 * 120.01377 * 179.76646 * 14 13 12 16 16 C 1.46499 * 120.00322 * 355.32872 * 15 14 13 17 17 C 1.50710 * 115.54614 * 279.95522 * 16 15 14 18 18 N 1.34774 * 119.99732 * 355.46779 * 17 16 15 19 19 O 1.21279 * 119.99546 * 175.47139 * 17 16 15 20 20 C 1.52991 * 117.50229 * 134.24396 * 16 15 14 21 21 C 1.52993 * 60.00159 * 252.51197 * 20 16 15 22 22 C 1.38853 * 119.96298 * 359.73917 * 14 13 12 23 23 C 1.38106 * 119.98227 * 0.02562 * 22 14 13 24 24 H 0.97005 * 120.00177 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47172 * 59.99280 * 9 7 2 26 26 H 1.09000 * 109.46787 * 299.99711 * 9 7 2 27 27 H 1.07998 * 119.99031 * 359.97438 * 12 11 10 28 28 H 1.07999 * 120.01100 * 180.25434 * 13 12 11 29 29 H 0.96999 * 119.99344 * 175.32496 * 15 14 13 30 30 H 0.96999 * 120.00172 * 354.95555 * 18 17 16 31 31 H 0.96998 * 119.99937 * 174.95898 * 18 17 16 32 32 H 1.08997 * 117.49875 * 0.02562 * 20 16 15 33 33 H 1.09004 * 117.49730 * 145.01607 * 20 16 15 34 34 H 1.09006 * 117.49345 * 252.51209 * 21 20 16 35 35 H 1.08994 * 117.50333 * 107.49506 * 21 20 16 36 36 H 1.08003 * 120.01060 * 179.97438 * 22 14 13 37 37 H 1.08002 * 119.99125 * 180.02562 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 -0.0001 11 6 5.3362 -2.7194 0.0010 12 6 6.1807 -1.6191 -0.0038 13 6 7.5501 -1.7992 0.0021 14 6 8.0812 -3.0822 0.0020 15 7 9.4686 -3.2655 0.0030 16 6 10.3605 -2.1078 -0.0991 17 6 10.5565 -1.5590 -1.4890 18 7 10.0032 -2.1867 -2.5455 19 8 11.2122 -0.5526 -1.6565 20 6 11.5513 -2.0467 0.8595 21 6 10.3585 -1.1100 1.0607 22 6 7.2350 -4.1831 0.0014 23 6 5.8660 -4.0012 0.0004 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6807 0.8905 26 1 3.8752 -0.6797 -0.8895 27 1 5.7673 -0.6214 -0.0087 28 1 8.2075 -0.9424 0.0026 29 1 9.8396 -4.1591 0.0714 30 1 9.5411 -3.0303 -2.4210 31 1 10.0672 -1.7947 -3.4305 32 1 11.6714 -2.8680 1.5659 33 1 12.4770 -1.6096 0.4850 34 1 10.4994 -0.0566 0.8185 35 1 9.6936 -1.3147 1.8997 36 1 7.6473 -5.1813 0.0009 37 1 5.2076 -4.8574 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162549886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:02 Heat of formation + Delta-G solvation = -18.302098 kcal Electronic energy + Delta-G solvation = -20725.941542 eV Core-core repulsion = 17469.415130 eV Total energy + Delta-G solvation = -3256.526413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55054 -39.36238 -37.65241 -36.33743 -34.05629 -32.97549 -32.50006 -30.76774 -28.80766 -27.29391 -24.62149 -23.53019 -22.70222 -21.97303 -20.97115 -19.82878 -18.01362 -17.80293 -17.30443 -16.85055 -16.51315 -15.52476 -14.96272 -14.88432 -14.76803 -14.67958 -14.23189 -13.99423 -13.49153 -13.15209 -12.90525 -12.79146 -12.33877 -11.93187 -11.83870 -11.51721 -11.27092 -11.06525 -10.84511 -10.67592 -10.48914 -10.24189 -9.96607 -9.87624 -9.32034 -9.21991 -8.77341 -8.69285 -6.93356 -6.23101 -4.24642 1.59498 1.91615 2.16689 2.99067 3.18085 3.24778 3.25238 3.25909 3.54715 4.11109 4.24500 4.28625 4.46289 4.51725 4.58889 5.07709 5.08004 5.15449 5.19888 5.26370 5.56875 5.59692 5.72427 5.75334 5.80099 6.18787 6.32654 6.40764 6.47457 6.54901 6.76023 6.79532 6.89609 7.10091 7.31868 7.41968 7.61825 8.03907 8.05182 8.56790 8.87065 9.33535 10.89327 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.004113 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.519017 B = 6806.617732 C = 7410.279700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.086 0.914 9 C 0.169 3.831 10 O -0.307 6.307 11 C 0.107 3.893 12 C -0.172 4.172 13 C -0.142 4.142 14 C 0.148 3.852 15 N -0.722 5.722 16 C 0.069 3.931 17 C 0.548 3.452 18 N -0.842 5.842 19 O -0.548 6.548 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.123 4.123 24 H 0.269 0.731 25 H 0.017 0.983 26 H 0.012 0.988 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.401 0.599 30 H 0.406 0.594 31 H 0.401 0.599 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.835 -6.874 -0.318 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.698 3.302 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.104 0.896 9 C 0.096 3.904 10 O -0.219 6.219 11 C 0.059 3.941 12 C -0.192 4.192 13 C -0.164 4.164 14 C 0.050 3.950 15 N -0.359 5.359 16 C -0.024 4.024 17 C 0.332 3.668 18 N -0.405 5.405 19 O -0.425 6.425 20 C -0.179 4.179 21 C -0.184 4.184 22 C -0.167 4.167 23 C -0.142 4.142 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.145 0.855 28 H 0.135 0.865 29 H 0.237 0.763 30 H 0.235 0.765 31 H 0.232 0.768 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 22.955 -6.067 -0.265 23.745 hybrid contribution 0.230 0.548 -0.346 0.688 sum 23.185 -5.519 -0.611 23.840 Atomic orbital electron populations 1.69856 1.06030 1.27374 1.49394 1.24698 0.94818 0.98680 0.94303 0.86904 0.80457 0.83749 0.79049 1.19643 1.20440 1.18942 1.20791 0.87586 0.95716 1.52441 0.89605 1.20934 0.96407 0.77539 0.95566 1.86161 1.16229 1.32500 1.87056 1.19138 0.84557 0.93487 0.96925 1.21205 0.93345 0.98962 1.05673 1.20481 0.94613 0.95229 1.06034 1.17526 0.82561 0.93665 1.01210 1.43624 1.01366 1.05997 1.84873 1.20332 0.98809 0.93691 0.89614 1.19835 0.77900 0.83019 0.86095 1.43675 1.59060 1.27459 1.10276 1.90751 1.40432 1.25430 1.85866 1.23299 0.92772 1.02519 0.99321 1.23403 1.00366 0.97054 0.97554 1.20263 0.92172 0.96866 1.07439 1.20185 0.94153 0.95205 1.04636 0.92080 0.96579 0.97062 0.85518 0.86463 0.76259 0.76479 0.76774 0.87369 0.87140 0.87064 0.87051 0.86024 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.53 -15.34 9.99 -34.44 -0.34 -15.68 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 9 C 0.17 4.21 3.56 36.00 0.13 4.34 16 10 O -0.31 -7.17 10.12 -19.76 -0.20 -7.37 16 11 C 0.11 2.04 6.69 -39.24 -0.26 1.78 16 12 C -0.17 -3.03 9.03 -39.46 -0.36 -3.38 16 13 C -0.14 -2.04 9.02 -39.39 -0.36 -2.40 16 14 C 0.15 1.77 6.45 -83.69 -0.54 1.23 16 15 N -0.72 -6.31 4.70 -47.02 -0.22 -6.53 16 16 C 0.07 0.65 1.79 -132.97 -0.24 0.41 16 17 C 0.55 6.29 7.80 -10.98 -0.09 6.21 16 18 N -0.84 -7.60 8.84 31.22 0.28 -7.33 16 19 O -0.55 -8.11 17.31 5.56 0.10 -8.01 16 20 C -0.14 -1.08 10.02 -26.74 -0.27 -1.35 16 21 C -0.15 -1.37 8.13 -26.74 -0.22 -1.59 16 22 C -0.15 -1.77 9.89 -39.40 -0.39 -2.15 16 23 C -0.12 -1.90 9.98 -39.46 -0.39 -2.29 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.40 6.73 -51.93 -0.35 0.05 16 26 H 0.01 0.28 7.07 -51.93 -0.37 -0.09 16 27 H 0.13 2.32 6.29 -52.49 -0.33 1.99 16 28 H 0.12 1.62 5.82 -52.49 -0.31 1.31 16 29 H 0.40 2.61 8.85 -40.82 -0.36 2.24 16 30 H 0.41 3.17 7.82 -40.82 -0.32 2.85 16 31 H 0.40 3.20 8.93 -40.82 -0.36 2.84 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.86 8.13 -51.93 -0.42 0.43 16 34 H 0.11 1.12 7.97 -51.93 -0.41 0.71 16 35 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 317.36 15.07 4.78 4.78 Total: -1.00 -32.96 317.36 -7.10 -40.05 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.51 Total: 7.01 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -3.42 Total: -12.73 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.83 Total: -39.92 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.10 Total: -15.39 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.96 -7.10 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162549886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.752 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds