Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99607 * 2 1 4 4 H 1.48508 * 109.47031 * 269.99606 * 3 2 1 5 5 H 1.48501 * 109.47557 * 29.99962 * 3 2 1 6 6 H 1.48504 * 109.46837 * 150.00245 * 3 2 1 7 7 C 1.37871 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00054 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00264 * 180.02562 * 7 2 1 10 10 O 1.42895 * 109.47392 * 179.97438 * 9 7 2 11 11 C 1.36006 * 116.99715 * 180.02562 * 10 9 7 12 12 C 1.38697 * 119.98197 * 359.72137 * 11 10 9 13 13 C 1.38118 * 120.01681 * 179.76732 * 12 11 10 14 14 C 1.38865 * 119.97740 * 0.51443 * 13 12 11 15 15 N 1.39943 * 120.01377 * 179.76646 * 14 13 12 16 16 C 1.46499 * 120.00322 * 355.32872 * 15 14 13 17 17 C 1.50710 * 115.54614 * 279.95522 * 16 15 14 18 18 N 1.34774 * 119.99732 * 355.46779 * 17 16 15 19 19 O 1.21279 * 119.99546 * 175.47139 * 17 16 15 20 20 C 1.52991 * 117.50229 * 134.24396 * 16 15 14 21 21 C 1.52993 * 60.00159 * 252.51197 * 20 16 15 22 22 C 1.38853 * 119.96298 * 359.73917 * 14 13 12 23 23 C 1.38106 * 119.98227 * 0.02562 * 22 14 13 24 24 H 0.97005 * 120.00177 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47172 * 59.99280 * 9 7 2 26 26 H 1.09000 * 109.46787 * 299.99711 * 9 7 2 27 27 H 1.07998 * 119.99031 * 359.97438 * 12 11 10 28 28 H 1.07999 * 120.01100 * 180.25434 * 13 12 11 29 29 H 0.96999 * 119.99344 * 175.32496 * 15 14 13 30 30 H 0.96999 * 120.00172 * 354.95555 * 18 17 16 31 31 H 0.96998 * 119.99937 * 174.95898 * 18 17 16 32 32 H 1.08997 * 117.49875 * 0.02562 * 20 16 15 33 33 H 1.09004 * 117.49730 * 145.01607 * 20 16 15 34 34 H 1.09006 * 117.49345 * 252.51209 * 21 20 16 35 35 H 1.08994 * 117.50333 * 107.49506 * 21 20 16 36 36 H 1.08003 * 120.01060 * 179.97438 * 22 14 13 37 37 H 1.08002 * 119.99125 * 180.02562 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 -0.0001 11 6 5.3362 -2.7194 0.0010 12 6 6.1807 -1.6191 -0.0038 13 6 7.5501 -1.7992 0.0021 14 6 8.0812 -3.0822 0.0020 15 7 9.4686 -3.2655 0.0030 16 6 10.3605 -2.1078 -0.0991 17 6 10.5565 -1.5590 -1.4890 18 7 10.0032 -2.1867 -2.5455 19 8 11.2122 -0.5526 -1.6565 20 6 11.5513 -2.0467 0.8595 21 6 10.3585 -1.1100 1.0607 22 6 7.2350 -4.1831 0.0014 23 6 5.8660 -4.0012 0.0004 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6807 0.8905 26 1 3.8752 -0.6797 -0.8895 27 1 5.7673 -0.6214 -0.0087 28 1 8.2075 -0.9424 0.0026 29 1 9.8396 -4.1591 0.0714 30 1 9.5411 -3.0303 -2.4210 31 1 10.0672 -1.7947 -3.4305 32 1 11.6714 -2.8680 1.5659 33 1 12.4770 -1.6096 0.4850 34 1 10.4994 -0.0566 0.8185 35 1 9.6936 -1.3147 1.8997 36 1 7.6473 -5.1813 0.0009 37 1 5.2076 -4.8574 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162549886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = -43.771579 kcal Electronic energy + Delta-G solvation = -20727.045982 eV Core-core repulsion = 17469.415130 eV Total energy + Delta-G solvation = -3257.630852 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46849 -40.62925 -38.86045 -37.39748 -35.09395 -34.82963 -33.64130 -31.98400 -30.63056 -28.59845 -25.48192 -25.06770 -23.68439 -23.14335 -22.33465 -20.68670 -19.52309 -18.88415 -18.36404 -18.09758 -17.99242 -16.78223 -16.48870 -16.27601 -15.78855 -15.64121 -15.56024 -15.17117 -14.84791 -14.36289 -14.26520 -14.04298 -13.70728 -13.36364 -13.11105 -13.02896 -12.48157 -12.37757 -12.18836 -11.93275 -11.80075 -11.50730 -11.36654 -11.28301 -10.92505 -10.70311 -10.34819 -9.89992 -8.44621 -8.08169 -6.54497 0.43403 0.70520 1.29432 1.31388 1.33585 1.41845 2.14720 2.22692 2.48136 2.72988 2.82529 2.86992 2.94092 3.70702 3.83157 3.86757 3.94877 4.04642 4.31905 4.40965 4.46783 4.60517 4.66529 4.74379 4.79575 4.90380 5.06071 5.13665 5.20828 5.27170 5.34429 5.61670 5.70813 5.80565 5.96770 6.22515 6.42494 6.50141 6.83614 6.91342 7.10575 7.24048 8.71990 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.004113 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.519017 B = 6806.617732 C = 7410.279700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.023 3.977 3 Si 0.947 3.053 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.247 1.247 7 C -0.553 4.553 8 H 0.037 0.963 9 C 0.186 3.814 10 O -0.338 6.338 11 C 0.056 3.944 12 C -0.183 4.183 13 C -0.148 4.148 14 C 0.174 3.826 15 N -0.700 5.700 16 C 0.058 3.942 17 C 0.542 3.458 18 N -0.832 5.832 19 O -0.587 6.587 20 C -0.114 4.114 21 C -0.156 4.156 22 C -0.130 4.130 23 C -0.121 4.121 24 H 0.276 0.724 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.420 0.580 30 H 0.413 0.587 31 H 0.407 0.593 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.167 0.833 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.373 -7.431 -0.028 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.176 4.176 3 Si 0.768 3.232 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.171 1.171 7 C -0.591 4.591 8 H 0.055 0.945 9 C 0.112 3.888 10 O -0.253 6.253 11 C 0.009 3.991 12 C -0.202 4.202 13 C -0.170 4.170 14 C 0.075 3.925 15 N -0.336 5.336 16 C -0.035 4.035 17 C 0.326 3.674 18 N -0.394 5.394 19 O -0.467 6.467 20 C -0.152 4.152 21 C -0.195 4.195 22 C -0.151 4.151 23 C -0.141 4.141 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.129 0.871 28 H 0.141 0.859 29 H 0.259 0.741 30 H 0.244 0.756 31 H 0.238 0.762 32 H 0.153 0.847 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.184 0.816 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 26.532 -6.693 0.013 27.363 hybrid contribution -0.747 0.555 -0.460 1.038 sum 25.784 -6.138 -0.447 26.509 Atomic orbital electron populations 1.69998 1.08073 1.29032 1.50168 1.25707 0.95764 1.03035 0.93139 0.85734 0.79574 0.77898 0.80018 1.18216 1.19247 1.17082 1.21050 0.90167 0.94379 1.53469 0.94466 1.20515 0.93539 0.79021 0.95774 1.86062 1.19406 1.31081 1.88705 1.19512 0.82759 0.95542 1.01242 1.21134 0.94598 0.97829 1.06662 1.20498 0.93296 0.96712 1.06517 1.17544 0.84077 0.92693 0.98226 1.43496 0.99823 1.06928 1.83343 1.20310 1.00310 0.94011 0.88858 1.20174 0.77476 0.82612 0.87128 1.43639 1.58072 1.27430 1.10245 1.90737 1.42342 1.27175 1.86473 1.23410 0.91712 1.02131 0.97985 1.23397 1.01919 0.96788 0.97360 1.20602 0.90482 0.98862 1.05188 1.20439 0.95861 0.93925 1.03844 0.91461 0.96215 0.96389 0.87140 0.85928 0.74067 0.75576 0.76203 0.84698 0.87131 0.88262 0.86872 0.81601 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.30 13.96 21.45 0.30 -58.00 16 2 C 0.02 1.35 5.47 84.65 0.46 1.81 16 3 Si 0.95 43.28 27.47 68.60 1.88 45.16 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 7 C -0.55 -33.82 9.99 25.60 0.26 -33.57 16 8 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 9 C 0.19 9.56 3.56 71.23 0.25 9.82 16 10 O -0.34 -16.52 10.12 -93.62 -0.95 -17.47 16 11 C 0.06 2.14 6.69 22.49 0.15 2.29 16 12 C -0.18 -6.38 9.03 22.35 0.20 -6.17 16 13 C -0.15 -3.99 9.02 22.39 0.20 -3.79 16 14 C 0.17 3.54 6.45 38.14 0.25 3.79 16 15 N -0.70 -9.06 4.70 -302.67 -1.42 -10.48 16 16 C 0.06 0.91 1.79 2.86 0.01 0.92 16 17 C 0.54 11.22 7.80 87.66 0.68 11.90 16 18 N -0.83 -12.95 8.84 -173.53 -1.53 -14.49 16 19 O -0.59 -16.67 17.31 -3.03 -0.05 -16.72 16 20 C -0.11 -1.32 10.02 30.59 0.31 -1.02 16 21 C -0.16 -2.54 8.13 30.59 0.25 -2.30 16 22 C -0.13 -2.63 9.89 22.39 0.22 -2.41 16 23 C -0.12 -3.58 9.98 22.35 0.22 -3.36 16 24 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 25 H 0.02 1.00 6.73 -2.38 -0.02 0.98 16 26 H 0.02 0.90 7.07 -2.39 -0.02 0.88 16 27 H 0.11 4.11 6.29 -2.91 -0.02 4.09 16 28 H 0.12 3.18 5.82 -2.91 -0.02 3.16 16 29 H 0.42 2.99 8.85 -92.71 -0.82 2.17 16 30 H 0.41 5.07 7.82 -92.71 -0.73 4.34 16 31 H 0.41 5.70 8.93 -92.71 -0.83 4.87 16 32 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 1.36 8.13 -2.39 -0.02 1.34 16 34 H 0.10 1.88 7.97 -2.38 -0.02 1.86 16 35 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -76.31 317.36 0.39 -75.92 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -1.29 Total: 18.16 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 3.46 Total: -22.08 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -2.66 Total: -82.96 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.00 Total: -34.19 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.16 kcal Total: -76.31 0.39 -75.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162549886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.148 kcal (2) G-P(sol) polarization free energy of solvation -76.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds