Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.39912 * 120.00070 * 179.97438 * 12 11 10 14 14 C 1.38916 * 120.15321 * 0.02562 * 13 12 11 15 15 C 1.38201 * 120.10891 * 180.02562 * 14 13 12 16 16 C 1.38336 * 120.31986 * 359.97438 * 15 14 13 17 17 C 1.38507 * 120.00524 * 359.97438 * 16 15 14 18 18 C 1.39053 * 120.15861 * 179.72777 * 13 12 11 19 19 N 1.40457 * 120.74442 * 0.61458 * 18 13 12 20 20 C 1.35103 * 118.88168 * 195.20117 * 19 18 13 21 21 O 1.21308 * 120.15378 * 181.37001 * 20 19 18 22 22 C 1.50762 * 119.69367 * 1.39618 * 20 19 18 23 23 O 1.36004 * 120.63094 * 180.02562 * 17 16 15 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 32 32 H 1.07996 * 119.95044 * 359.97438 * 14 13 12 33 33 H 1.08006 * 119.83925 * 179.97438 * 15 14 13 34 34 H 1.07996 * 119.99281 * 179.97438 * 16 15 14 35 35 H 0.97000 * 120.59477 * 14.91323 * 19 18 13 36 36 H 1.09003 * 109.44658 * 208.61385 * 22 20 19 37 37 H 1.09002 * 109.41982 * 88.69822 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9657 -7.4197 -0.0008 14 6 0.6006 -7.6772 0.0002 15 6 0.1409 -8.9805 0.0017 16 6 1.0348 -10.0363 0.0016 17 6 2.3978 -9.7899 -0.0004 18 6 2.8663 -8.4791 -0.0071 19 7 4.2511 -8.2443 -0.0016 20 6 5.0862 -9.2582 -0.3179 21 8 6.2870 -9.0879 -0.2962 22 6 4.5186 -10.6021 -0.6984 23 8 3.2878 -10.8182 -0.0010 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.3858 -5.9235 -0.0021 32 1 -0.1027 -6.8576 0.0006 33 1 -0.9214 -9.1757 0.0029 34 1 0.6698 -11.0527 0.0032 35 1 4.6024 -7.3681 0.2214 36 1 5.2286 -11.3848 -0.4311 37 1 4.3378 -10.6280 -1.7730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = -51.682130 kcal Electronic energy + Delta-G solvation = -20380.460897 eV Core-core repulsion = 17122.487018 eV Total energy + Delta-G solvation = -3257.973879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.57254 -39.10621 -38.20973 -35.88175 -35.21978 -33.55301 -31.58067 -30.23568 -28.86583 -27.85776 -26.35622 -24.14031 -22.99897 -21.91700 -20.58106 -19.95890 -18.91990 -18.20772 -17.16660 -16.49626 -16.38412 -15.66167 -15.39793 -15.20133 -14.98460 -14.78883 -14.53816 -14.48348 -13.83611 -13.46012 -12.97646 -12.50443 -12.31615 -12.04964 -11.82944 -11.66168 -11.42785 -10.97492 -10.90826 -10.79105 -10.65787 -10.33500 -10.09254 -9.72192 -9.56600 -9.22771 -8.44058 -8.20434 -7.34673 -6.09254 -4.12416 0.96828 1.37412 2.11655 2.52616 3.08391 3.27845 3.32692 3.34281 3.41427 3.66680 3.81794 4.38773 4.64049 4.71282 4.78351 4.85685 5.18864 5.26913 5.27447 5.45614 5.53299 5.59111 5.77982 5.94553 5.97926 6.31635 6.36162 6.40454 6.45446 6.53954 6.64378 6.85990 7.02808 7.27272 7.52994 7.54562 7.64999 7.66898 7.88659 8.30126 8.93638 9.52367 11.01971 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.003260 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.882233 B = 8586.383538 C = 9577.470262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.122 4.122 11 C 0.121 3.879 12 N -0.740 5.740 13 C 0.230 3.770 14 C -0.192 4.192 15 C -0.056 4.056 16 C -0.175 4.175 17 C 0.123 3.877 18 C -0.002 4.002 19 N -0.651 5.651 20 C 0.489 3.511 21 O -0.523 6.523 22 C 0.053 3.947 23 O -0.304 6.304 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.393 0.607 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.410 0.590 36 H 0.142 0.858 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -21.439 -1.198 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.160 4.160 11 C -0.001 4.001 12 N -0.368 5.368 13 C 0.123 3.877 14 C -0.215 4.215 15 C -0.075 4.075 16 C -0.196 4.196 17 C 0.076 3.924 18 C -0.101 4.101 19 N -0.300 5.300 20 C 0.276 3.724 21 O -0.399 6.399 22 C -0.025 4.025 23 O -0.218 6.218 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.228 0.772 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.249 0.751 36 H 0.160 0.840 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.434 -21.413 -1.146 21.581 hybrid contribution 1.081 1.727 0.016 2.037 sum 3.515 -19.686 -1.130 20.030 Atomic orbital electron populations 1.69945 1.06056 1.26899 1.50405 1.25015 0.94874 0.99322 0.95129 0.86635 0.79588 0.82993 0.78666 1.20207 1.21199 1.20207 1.21159 0.92988 0.90957 1.51235 0.92733 1.19012 0.93757 0.90829 0.97565 1.21878 0.99888 0.93264 1.00978 1.21698 0.91987 0.85348 1.01111 1.45020 1.08994 1.02106 1.80686 1.17335 0.92142 0.83725 0.94520 1.20661 0.92690 0.97926 1.10249 1.20764 0.99435 0.91129 0.96210 1.20231 0.88970 1.00273 1.10164 1.18320 0.89850 0.83660 1.00586 1.17409 0.82433 0.92949 1.17282 1.43482 1.04551 1.14485 1.67464 1.21472 0.86811 0.87131 0.76979 1.90812 1.14234 1.83375 1.51461 1.23148 0.85458 0.95063 0.98833 1.86251 1.26432 1.37357 1.71758 0.92812 0.96290 0.96272 0.92731 0.92738 0.92037 0.92054 0.77228 0.84729 0.84933 0.84916 0.75068 0.83999 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.35 9.11 -34.44 -0.31 -14.67 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.03 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.12 1.83 4.92 -4.04 -0.02 1.81 16 12 N -0.74 -9.64 5.72 -58.53 -0.33 -9.98 16 13 C 0.23 2.88 6.67 -83.62 -0.56 2.33 16 14 C -0.19 -2.19 9.32 -39.34 -0.37 -2.56 16 15 C -0.06 -0.54 10.03 -39.56 -0.40 -0.93 16 16 C -0.18 -1.74 10.00 -39.45 -0.39 -2.13 16 17 C 0.12 1.40 6.44 -39.12 -0.25 1.15 16 18 C 0.00 -0.02 6.56 -83.24 -0.55 -0.57 16 19 N -0.65 -7.70 5.41 -9.51 -0.05 -7.75 16 20 C 0.49 5.89 7.94 -10.81 -0.09 5.80 16 21 O -0.52 -7.84 17.95 5.53 0.10 -7.74 16 22 C 0.05 0.47 7.17 36.04 0.26 0.73 16 23 O -0.30 -3.23 10.46 -19.75 -0.21 -3.44 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 30 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 31 H 0.39 4.77 6.83 -40.82 -0.28 4.49 16 32 H 0.13 1.49 6.75 -52.49 -0.35 1.14 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.41 4.57 7.29 -40.82 -0.30 4.27 16 36 H 0.14 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -31.46 315.32 -7.76 -39.22 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.68 Total: 3.59 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -3.05 Total: -9.43 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.35 Total: -43.13 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.11 Total: -11.18 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.46 -7.76 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.465 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds