Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.39912 * 120.00070 * 179.97438 * 12 11 10 14 14 C 1.38916 * 120.15321 * 0.02562 * 13 12 11 15 15 C 1.38201 * 120.10891 * 180.02562 * 14 13 12 16 16 C 1.38336 * 120.31986 * 359.97438 * 15 14 13 17 17 C 1.38507 * 120.00524 * 359.97438 * 16 15 14 18 18 C 1.39053 * 120.15861 * 179.72777 * 13 12 11 19 19 N 1.40457 * 120.74442 * 0.61458 * 18 13 12 20 20 C 1.35103 * 118.88168 * 195.20117 * 19 18 13 21 21 O 1.21308 * 120.15378 * 181.37001 * 20 19 18 22 22 C 1.50762 * 119.69367 * 1.39618 * 20 19 18 23 23 O 1.36004 * 120.63094 * 180.02562 * 17 16 15 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 32 32 H 1.07996 * 119.95044 * 359.97438 * 14 13 12 33 33 H 1.08006 * 119.83925 * 179.97438 * 15 14 13 34 34 H 1.07996 * 119.99281 * 179.97438 * 16 15 14 35 35 H 0.97000 * 120.59477 * 14.91323 * 19 18 13 36 36 H 1.09003 * 109.44658 * 208.61385 * 22 20 19 37 37 H 1.09002 * 109.41982 * 88.69822 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9657 -7.4197 -0.0008 14 6 0.6006 -7.6772 0.0002 15 6 0.1409 -8.9805 0.0017 16 6 1.0348 -10.0363 0.0016 17 6 2.3978 -9.7899 -0.0004 18 6 2.8663 -8.4791 -0.0071 19 7 4.2511 -8.2443 -0.0016 20 6 5.0862 -9.2582 -0.3179 21 8 6.2870 -9.0879 -0.2962 22 6 4.5186 -10.6021 -0.6984 23 8 3.2878 -10.8182 -0.0010 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.3858 -5.9235 -0.0021 32 1 -0.1027 -6.8576 0.0006 33 1 -0.9214 -9.1757 0.0029 34 1 0.6698 -11.0527 0.0032 35 1 4.6024 -7.3681 0.2214 36 1 5.2286 -11.3848 -0.4311 37 1 4.3378 -10.6280 -1.7730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = -72.994745 kcal Electronic energy + Delta-G solvation = -20381.385082 eV Core-core repulsion = 17122.487018 eV Total energy + Delta-G solvation = -3258.898064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.43177 -40.05011 -39.10986 -37.07560 -36.17149 -35.29228 -33.22964 -31.05185 -30.08433 -28.65687 -27.89220 -25.37120 -24.31491 -22.86471 -22.18009 -20.82018 -19.80223 -19.19767 -18.48537 -17.95097 -17.37089 -16.66151 -16.48031 -16.35126 -16.24054 -16.15969 -15.63409 -15.41479 -14.84077 -14.51590 -14.26424 -13.86058 -13.74904 -13.59642 -13.00647 -12.79888 -12.60688 -12.44365 -12.39814 -12.20880 -11.87033 -11.70037 -11.49606 -11.26785 -11.19319 -10.79329 -10.56417 -9.05437 -8.30453 -8.22281 -6.32851 0.11343 0.51830 1.24026 1.39616 1.41397 1.49458 1.65265 2.30632 2.35002 2.43747 2.82755 3.00122 3.11605 3.87274 3.92396 4.04244 4.15063 4.20809 4.21933 4.39458 4.49618 4.55922 4.70367 4.95181 4.95293 5.02847 5.10487 5.15568 5.46387 5.47743 5.56105 5.62744 5.70144 5.78621 5.82289 6.07477 6.22542 6.34428 6.59247 6.72427 6.83787 7.36480 8.89147 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.003260 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.882233 B = 8586.383538 C = 9577.470262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.107 4.107 11 C 0.139 3.861 12 N -0.742 5.742 13 C 0.214 3.786 14 C -0.204 4.204 15 C -0.048 4.048 16 C -0.169 4.169 17 C 0.113 3.887 18 C -0.012 4.012 19 N -0.653 5.653 20 C 0.484 3.516 21 O -0.560 6.560 22 C 0.056 3.944 23 O -0.307 6.307 24 H 0.264 0.736 25 H -0.002 1.002 26 H -0.002 1.002 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.396 0.604 32 H 0.134 0.866 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.409 0.591 36 H 0.167 0.833 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -22.815 -1.398 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.145 4.145 11 C 0.015 3.985 12 N -0.372 5.372 13 C 0.108 3.892 14 C -0.227 4.227 15 C -0.067 4.067 16 C -0.190 4.190 17 C 0.066 3.934 18 C -0.110 4.110 19 N -0.300 5.300 20 C 0.273 3.727 21 O -0.439 6.439 22 C -0.022 4.022 23 O -0.221 6.221 24 H 0.073 0.927 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.231 0.769 32 H 0.152 0.848 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.248 0.752 36 H 0.185 0.815 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.519 -22.822 -1.346 23.000 hybrid contribution 0.997 2.073 0.082 2.302 sum 3.517 -20.749 -1.264 21.083 Atomic orbital electron populations 1.70069 1.07632 1.27878 1.51429 1.25919 0.95758 1.03172 0.94739 0.85559 0.78338 0.78429 0.79084 1.19326 1.20806 1.19342 1.21655 0.93514 0.92486 1.50836 0.92357 1.18898 0.94253 0.92324 0.95473 1.21593 0.98678 0.93105 1.01140 1.21305 0.91661 0.84386 1.01142 1.44749 1.08697 1.01988 1.81720 1.17479 0.92815 0.83263 0.95677 1.20860 0.92273 0.99017 1.10562 1.21109 1.01011 0.90107 0.94448 1.20588 0.88333 1.01560 1.08511 1.18585 0.90704 0.83484 1.00644 1.17525 0.82254 0.93354 1.17909 1.43559 1.04739 1.14625 1.67089 1.22102 0.86370 0.88151 0.76109 1.90791 1.15715 1.84137 1.53254 1.23387 0.85073 0.93693 1.00019 1.86249 1.26751 1.36933 1.72157 0.92698 0.98352 0.98341 0.92506 0.92552 0.92092 0.92081 0.76885 0.84786 0.81946 0.82531 0.75223 0.81538 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.22 13.29 21.45 0.28 -54.93 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -30.22 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.11 -4.00 5.27 30.59 0.16 -3.84 16 11 C 0.14 4.17 4.92 86.38 0.42 4.59 16 12 N -0.74 -19.08 5.72 -339.08 -1.94 -21.02 16 13 C 0.21 5.17 6.67 38.21 0.25 5.42 16 14 C -0.20 -4.36 9.32 22.42 0.21 -4.16 16 15 C -0.05 -0.78 10.03 22.28 0.22 -0.56 16 16 C -0.17 -2.85 10.00 22.36 0.22 -2.62 16 17 C 0.11 2.33 6.44 22.57 0.15 2.48 16 18 C -0.01 -0.28 6.56 38.19 0.25 -0.03 16 19 N -0.65 -15.15 5.41 -302.20 -1.63 -16.78 16 20 C 0.48 11.29 7.94 87.63 0.70 11.99 16 21 O -0.56 -16.75 17.95 -3.12 -0.06 -16.80 16 22 C 0.06 0.86 7.17 71.26 0.51 1.37 16 23 O -0.31 -5.79 10.46 -93.60 -0.98 -6.77 16 24 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 30 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 31 H 0.40 9.56 6.83 -92.71 -0.63 8.93 16 32 H 0.13 2.84 6.75 -2.91 -0.02 2.82 16 33 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.41 9.20 7.29 -92.71 -0.68 8.53 16 36 H 0.17 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -67.88 315.32 1.44 -66.43 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -0.20 Total: 17.57 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 3.94 Total: -13.19 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -3.29 Total: -92.74 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -1.03 Total: -23.57 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -67.88 1.44 -66.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.560 kcal (2) G-P(sol) polarization free energy of solvation -67.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds