Wall clock time and date at job start Mon Mar 30 2020 01:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00063 * 2 1 4 4 H 1.48504 * 109.47395 * 240.00443 * 3 2 1 5 5 H 1.48493 * 109.47320 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47127 * 120.00609 * 3 2 1 7 7 C 1.38812 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00499 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99846 * 180.02562 * 9 7 2 11 11 H 1.08993 * 108.42279 * 327.35356 * 10 9 7 12 12 C 1.51584 * 108.49385 * 84.99686 * 10 9 7 13 13 C 1.53074 * 110.93774 * 189.39271 * 12 10 9 14 14 C 1.51452 * 108.45401 * 274.42646 * 13 12 10 15 15 C 1.38389 * 119.52172 * 250.72042 * 14 13 12 16 16 C 1.38296 * 119.62156 * 180.02562 * 15 14 13 17 17 C 1.38253 * 120.05833 * 0.25886 * 16 15 14 18 18 N 1.48023 * 119.97327 * 179.73080 * 17 16 15 19 19 O 1.21795 * 119.99590 * 359.97438 * 18 17 16 20 20 O 1.21798 * 119.99715 * 179.97438 * 18 17 16 21 21 C 1.38301 * 120.05595 * 359.49353 * 17 16 15 22 22 C 1.37048 * 120.16333 * 70.73753 * 14 13 12 23 23 C 1.51463 * 120.14235 * 359.94499 * 22 14 13 24 24 C 1.51592 * 108.48511 * 209.86811 * 10 9 7 25 25 H 0.97003 * 120.00156 * 359.97438 * 1 2 3 26 26 H 0.96994 * 120.00027 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.18872 * 69.01499 * 12 10 9 28 28 H 1.08998 * 109.18782 * 309.77144 * 12 10 9 29 29 H 1.09000 * 109.64151 * 154.73497 * 13 12 10 30 30 H 1.09004 * 109.63490 * 34.11338 * 13 12 10 31 31 H 1.08004 * 120.18937 * 0.02562 * 15 14 13 32 32 H 1.08002 * 119.96769 * 179.97438 * 16 15 14 33 33 H 1.07995 * 120.19049 * 180.25285 * 21 17 16 34 34 H 1.08998 * 109.63604 * 169.64406 * 23 22 14 35 35 H 1.08998 * 109.81151 * 49.12290 * 23 22 14 36 36 H 1.08998 * 109.18870 * 290.95130 * 24 10 9 37 37 H 1.09005 * 109.18728 * 50.20180 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9843 -3.5198 -0.5584 12 6 2.4070 -4.0106 1.4315 13 6 3.3693 -5.1999 1.4823 14 6 2.5561 -6.4768 1.4368 15 6 2.4633 -7.2668 2.5692 16 6 1.7218 -8.4335 2.5298 17 6 1.0824 -8.8086 1.3628 18 7 0.2941 -10.0607 1.3211 19 8 0.2093 -10.7603 2.3144 20 8 -0.2698 -10.3913 0.2933 21 6 1.1746 -8.0123 0.2358 22 6 1.9178 -6.8459 0.2816 23 6 2.0213 -5.9778 -0.9553 24 6 1.2187 -4.6965 -0.7165 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3881 0.0002 27 1 1.4943 -4.2651 1.9704 28 1 2.8756 -3.1501 1.9091 29 1 3.9459 -5.1655 2.4066 30 1 4.0423 -5.1634 0.6255 31 1 2.9671 -6.9740 3.4785 32 1 1.6459 -9.0545 3.4102 33 1 0.6727 -8.3012 -0.6758 34 1 1.6124 -6.5119 -1.8129 35 1 3.0650 -5.7265 -1.1439 36 1 0.3435 -4.9298 -0.1102 37 1 0.8920 -4.2946 -1.6757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172896894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:32 Heat of formation + Delta-G solvation = 17.539163 kcal Electronic energy + Delta-G solvation = -20933.493347 eV Core-core repulsion = 17678.521128 eV Total energy + Delta-G solvation = -3254.972219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23716 -40.38156 -37.08107 -36.61532 -33.97685 -33.37513 -31.80314 -30.22887 -29.37109 -26.73592 -25.20387 -23.63669 -23.13846 -22.53518 -20.74042 -19.87864 -18.87729 -18.65339 -17.57804 -17.19129 -16.15580 -16.02057 -15.05877 -14.83635 -14.20408 -13.95668 -13.78575 -13.56242 -13.12467 -12.92757 -12.68877 -12.25602 -11.85817 -11.70620 -11.60146 -11.39462 -11.24825 -11.20809 -10.99298 -10.85627 -10.77451 -10.40411 -10.31933 -9.96784 -9.77831 -9.44607 -9.13279 -8.96928 -7.06885 -5.84861 -3.14389 -0.21506 0.81884 1.30190 1.36134 3.15095 3.37402 3.42178 3.43527 4.18868 4.30806 4.45207 4.49918 4.68728 4.72820 4.95558 5.07468 5.23649 5.27592 5.39546 5.44487 5.48704 5.55591 5.59132 5.66098 5.76840 5.94688 5.96500 6.13060 6.16313 6.27883 6.30004 6.40633 6.43469 6.55078 6.81064 6.97133 7.58842 7.60423 8.33197 9.44407 10.01007 10.35371 11.37469 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.036329 B = 0.003648 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.557746 B = 7674.547956 C = 7932.388373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.175 3.825 11 H 0.045 0.955 12 C -0.128 4.128 13 C -0.089 4.089 14 C -0.015 4.015 15 C -0.117 4.117 16 C -0.063 4.063 17 C -0.055 4.055 18 N 0.033 4.967 19 O -0.170 6.170 20 O -0.167 6.167 21 C -0.050 4.050 22 C -0.073 4.073 23 C -0.077 4.077 24 C -0.119 4.119 25 H 0.256 0.744 26 H 0.383 0.617 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.182 -15.660 2.536 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.368 5.368 10 C 0.065 3.935 11 H 0.063 0.937 12 C -0.168 4.168 13 C -0.127 4.127 14 C -0.015 4.015 15 C -0.136 4.136 16 C -0.082 4.082 17 C -0.138 4.138 18 N 0.551 4.449 19 O -0.384 6.384 20 O -0.382 6.382 21 C -0.070 4.070 22 C -0.074 4.074 23 C -0.115 4.115 24 C -0.158 4.158 25 H 0.066 0.934 26 H 0.217 0.783 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.648 -14.883 2.535 16.496 hybrid contribution -0.195 0.533 0.186 0.598 sum 6.453 -14.349 2.721 15.967 Atomic orbital electron populations 1.69647 1.05156 1.25897 1.57249 1.24750 0.95489 0.97733 1.02798 0.86287 0.78559 0.83584 0.77854 1.21217 1.21671 1.21262 1.19189 0.90931 0.84098 1.43213 0.91189 1.42526 1.05839 0.99747 1.88674 1.19807 0.94869 0.86515 0.92332 0.93652 1.22107 0.98014 0.95555 1.01129 1.21074 0.97454 0.90988 1.03141 1.20341 0.93763 0.95356 0.92088 1.21213 0.99695 0.93450 0.99200 1.20991 0.93911 0.96928 0.96336 1.21080 1.04995 0.88962 0.98761 1.43663 0.99197 1.02046 1.00038 1.94512 1.66886 1.51240 1.25809 1.94528 1.45994 1.76551 1.21136 1.21046 0.96187 0.92473 0.97247 1.19786 0.96528 0.94106 0.96995 1.20874 1.02301 0.95224 0.93073 1.21626 0.98683 0.93564 1.01888 0.93376 0.78318 0.92653 0.90528 0.90744 0.89815 0.83603 0.83349 0.83076 0.90554 0.89721 0.92256 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.38 9.80 -15.06 -0.15 -6.52 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 9 N -0.73 -17.00 5.01 -54.82 -0.27 -17.27 16 10 C 0.17 3.04 2.26 -69.36 -0.16 2.88 16 11 H 0.05 0.80 7.70 -51.93 -0.40 0.40 16 12 C -0.13 -1.96 5.16 -27.41 -0.14 -2.10 16 13 C -0.09 -0.99 5.46 -27.48 -0.15 -1.14 16 14 C -0.02 -0.17 4.98 -104.63 -0.52 -0.69 16 15 C -0.12 -1.14 9.69 -39.50 -0.38 -1.52 16 16 C -0.06 -0.66 9.56 -39.55 -0.38 -1.04 16 17 C -0.05 -0.68 6.85 -79.92 -0.55 -1.22 16 18 N 0.03 0.47 4.45 33.98 0.15 0.62 16 19 O -0.17 -2.46 18.45 -29.46 -0.54 -3.00 16 20 O -0.17 -2.47 18.45 -29.46 -0.54 -3.01 16 21 C -0.05 -0.58 9.19 -39.50 -0.36 -0.94 16 22 C -0.07 -0.83 4.99 -104.62 -0.52 -1.35 16 23 C -0.08 -0.86 5.45 -27.47 -0.15 -1.01 16 24 C -0.12 -1.74 5.06 -27.41 -0.14 -1.88 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.38 9.71 7.81 -40.82 -0.32 9.39 16 27 H 0.05 0.90 7.85 -51.93 -0.41 0.49 16 28 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 29 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 30 H 0.08 0.88 6.91 -51.93 -0.36 0.52 16 31 H 0.15 1.06 7.97 -52.48 -0.42 0.64 16 32 H 0.15 1.33 7.61 -52.49 -0.40 0.93 16 33 H 0.15 1.58 7.53 -52.49 -0.40 1.18 16 34 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 35 H 0.08 0.88 6.91 -51.93 -0.36 0.52 16 36 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -29.79 310.53 -9.20 -38.99 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.67 Total: 5.97 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -3.69 Total: -16.94 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.60 Total: -43.25 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -1.09 Total: -6.01 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.79 -9.20 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172896894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.529 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds