Wall clock time and date at job start Mon Mar 30 2020 01:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00063 * 2 1 4 4 H 1.48504 * 109.47395 * 240.00443 * 3 2 1 5 5 H 1.48493 * 109.47320 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47127 * 120.00609 * 3 2 1 7 7 C 1.38812 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00499 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99846 * 180.02562 * 9 7 2 11 11 H 1.08993 * 108.42279 * 327.35356 * 10 9 7 12 12 C 1.51584 * 108.49385 * 84.99686 * 10 9 7 13 13 C 1.53074 * 110.93774 * 189.39271 * 12 10 9 14 14 C 1.51452 * 108.45401 * 274.42646 * 13 12 10 15 15 C 1.38389 * 119.52172 * 250.72042 * 14 13 12 16 16 C 1.38296 * 119.62156 * 180.02562 * 15 14 13 17 17 C 1.38253 * 120.05833 * 0.25886 * 16 15 14 18 18 N 1.48023 * 119.97327 * 179.73080 * 17 16 15 19 19 O 1.21795 * 119.99590 * 359.97438 * 18 17 16 20 20 O 1.21798 * 119.99715 * 179.97438 * 18 17 16 21 21 C 1.38301 * 120.05595 * 359.49353 * 17 16 15 22 22 C 1.37048 * 120.16333 * 70.73753 * 14 13 12 23 23 C 1.51463 * 120.14235 * 359.94499 * 22 14 13 24 24 C 1.51592 * 108.48511 * 209.86811 * 10 9 7 25 25 H 0.97003 * 120.00156 * 359.97438 * 1 2 3 26 26 H 0.96994 * 120.00027 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.18872 * 69.01499 * 12 10 9 28 28 H 1.08998 * 109.18782 * 309.77144 * 12 10 9 29 29 H 1.09000 * 109.64151 * 154.73497 * 13 12 10 30 30 H 1.09004 * 109.63490 * 34.11338 * 13 12 10 31 31 H 1.08004 * 120.18937 * 0.02562 * 15 14 13 32 32 H 1.08002 * 119.96769 * 179.97438 * 16 15 14 33 33 H 1.07995 * 120.19049 * 180.25285 * 21 17 16 34 34 H 1.08998 * 109.63604 * 169.64406 * 23 22 14 35 35 H 1.08998 * 109.81151 * 49.12290 * 23 22 14 36 36 H 1.08998 * 109.18870 * 290.95130 * 24 10 9 37 37 H 1.09005 * 109.18728 * 50.20180 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9843 -3.5198 -0.5584 12 6 2.4070 -4.0106 1.4315 13 6 3.3693 -5.1999 1.4823 14 6 2.5561 -6.4768 1.4368 15 6 2.4633 -7.2668 2.5692 16 6 1.7218 -8.4335 2.5298 17 6 1.0824 -8.8086 1.3628 18 7 0.2941 -10.0607 1.3211 19 8 0.2093 -10.7603 2.3144 20 8 -0.2698 -10.3913 0.2933 21 6 1.1746 -8.0123 0.2358 22 6 1.9178 -6.8459 0.2816 23 6 2.0213 -5.9778 -0.9553 24 6 1.2187 -4.6965 -0.7165 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3881 0.0002 27 1 1.4943 -4.2651 1.9704 28 1 2.8756 -3.1501 1.9091 29 1 3.9459 -5.1655 2.4066 30 1 4.0423 -5.1634 0.6255 31 1 2.9671 -6.9740 3.4785 32 1 1.6459 -9.0545 3.4102 33 1 0.6727 -8.3012 -0.6758 34 1 1.6124 -6.5119 -1.8129 35 1 3.0650 -5.7265 -1.1439 36 1 0.3435 -4.9298 -0.1102 37 1 0.8920 -4.2946 -1.6757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172896894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:31 Heat of formation + Delta-G solvation = 1.859777 kcal Electronic energy + Delta-G solvation = -20934.173256 eV Core-core repulsion = 17678.521128 eV Total energy + Delta-G solvation = -3255.652128 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.27129 -41.32610 -38.35173 -37.69466 -35.51881 -34.31038 -33.36771 -31.27553 -30.81475 -27.93134 -26.54118 -24.82417 -24.51978 -23.56077 -21.74333 -21.21134 -19.88370 -19.68882 -19.07590 -18.62309 -17.23916 -16.99812 -16.44741 -16.01581 -15.44953 -15.37150 -15.09905 -14.72536 -14.27033 -14.08124 -13.75818 -13.29871 -13.24686 -12.90515 -12.76048 -12.73911 -12.53533 -12.44859 -12.32414 -12.20948 -12.17226 -11.93207 -11.69108 -11.60051 -11.31745 -10.89316 -10.29620 -10.05177 -9.00052 -7.92575 -5.20777 -1.22067 -0.00473 0.31769 0.38658 1.48541 1.50489 1.56553 2.28688 2.57377 3.31492 3.41393 3.47282 3.57434 3.79066 3.82396 3.88345 4.06765 4.12073 4.30956 4.40022 4.47350 4.53643 4.67252 4.70094 4.79586 4.81725 4.91949 4.95088 5.00782 5.16658 5.25588 5.26243 5.44498 5.47158 5.52134 5.56080 5.68803 6.29661 6.48420 7.35468 8.12789 8.34059 9.30926 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.036329 B = 0.003648 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.557746 B = 7674.547956 C = 7932.388373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.301 1.301 6 H -0.277 1.277 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.743 5.743 10 C 0.170 3.830 11 H 0.047 0.953 12 C -0.117 4.117 13 C -0.078 4.078 14 C -0.019 4.019 15 C -0.107 4.107 16 C -0.060 4.060 17 C -0.069 4.069 18 N 0.033 4.967 19 O -0.177 6.177 20 O -0.191 6.191 21 C -0.053 4.053 22 C -0.078 4.078 23 C -0.068 4.068 24 C -0.110 4.110 25 H 0.249 0.751 26 H 0.369 0.631 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.178 0.822 32 H 0.165 0.835 33 H 0.157 0.843 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.048 0.952 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.344 -16.558 3.206 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.367 4.367 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.062 3.938 11 H 0.065 0.935 12 C -0.158 4.158 13 C -0.116 4.116 14 C -0.019 4.019 15 C -0.125 4.125 16 C -0.079 4.079 17 C -0.153 4.153 18 N 0.547 4.453 19 O -0.391 6.391 20 O -0.402 6.402 21 C -0.073 4.073 22 C -0.079 4.079 23 C -0.106 4.106 24 C -0.149 4.149 25 H 0.058 0.942 26 H 0.200 0.800 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.195 0.805 32 H 0.183 0.817 33 H 0.175 0.825 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.847 -15.843 3.184 18.423 hybrid contribution -0.819 0.740 0.010 1.104 sum 8.028 -15.103 3.194 17.400 Atomic orbital electron populations 1.69811 1.06697 1.25926 1.59920 1.25520 0.96241 1.01026 1.04178 0.85281 0.77188 0.79506 0.78229 1.20372 1.22735 1.20341 1.19611 0.91487 0.85158 1.40415 0.90270 1.42802 1.05418 1.01241 1.88815 1.20131 0.94652 0.84978 0.94007 0.93500 1.21819 0.98453 0.96788 0.98692 1.20982 0.96591 0.88801 1.05209 1.20442 0.93600 0.95439 0.92446 1.21541 0.98776 0.92423 0.99781 1.21279 0.93133 0.97285 0.96199 1.21296 1.05635 0.88385 0.99934 1.43943 0.99102 1.02530 0.99715 1.94491 1.67022 1.51836 1.25797 1.94520 1.47036 1.77240 1.21392 1.21147 0.96165 0.92491 0.97453 1.19796 0.96811 0.94039 0.97268 1.20805 1.02546 0.93333 0.93903 1.21464 0.98379 0.94530 1.00498 0.94249 0.80003 0.93869 0.92669 0.88089 0.88590 0.80501 0.81721 0.82497 0.88673 0.88327 0.93325 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 44.65 29.55 68.60 2.03 46.67 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.23 -12.31 9.80 84.03 0.82 -11.49 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -35.09 5.01 -327.36 -1.64 -36.73 16 10 C 0.17 5.78 2.26 44.06 0.10 5.88 16 11 H 0.05 1.58 7.70 -2.39 -0.02 1.56 16 12 C -0.12 -3.43 5.16 30.15 0.16 -3.27 16 13 C -0.08 -1.48 5.46 30.11 0.16 -1.31 16 14 C -0.02 -0.35 4.98 -19.87 -0.10 -0.45 16 15 C -0.11 -1.67 9.69 22.32 0.22 -1.45 16 16 C -0.06 -1.08 9.56 22.29 0.21 -0.87 16 17 C -0.07 -1.58 6.85 36.39 0.25 -1.33 16 18 N 0.03 0.91 4.45 -46.41 -0.21 0.70 16 19 O -0.18 -4.93 18.45 18.89 0.35 -4.58 16 20 O -0.19 -5.59 18.45 18.89 0.35 -5.24 16 21 C -0.05 -1.13 9.19 22.32 0.21 -0.93 16 22 C -0.08 -1.57 4.99 -19.87 -0.10 -1.67 16 23 C -0.07 -1.36 5.45 30.12 0.16 -1.19 16 24 C -0.11 -3.13 5.06 30.16 0.15 -2.98 16 25 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.37 19.24 7.81 -92.71 -0.72 18.52 16 27 H 0.04 1.35 7.85 -2.38 -0.02 1.33 16 28 H 0.05 1.84 8.05 -2.39 -0.02 1.83 16 29 H 0.10 1.44 7.91 -2.39 -0.02 1.43 16 30 H 0.10 1.63 6.91 -2.39 -0.02 1.62 16 31 H 0.18 1.66 7.97 -2.91 -0.02 1.63 16 32 H 0.17 2.42 7.61 -2.91 -0.02 2.40 16 33 H 0.16 3.06 7.53 -2.91 -0.02 3.04 16 34 H 0.09 1.57 7.91 -2.39 -0.02 1.55 16 35 H 0.10 1.72 6.91 -2.39 -0.02 1.70 16 36 H 0.05 1.47 7.85 -2.39 -0.02 1.45 16 37 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -65.37 310.53 4.24 -61.13 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.37 Total: 21.17 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 2.71 Total: -24.92 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -1.56 Total: -94.23 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.70 Total: -9.82 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.37 4.24 -61.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172896894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.988 kcal (2) G-P(sol) polarization free energy of solvation -65.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds