Wall clock time and date at job start Mon Mar 30 2020 01:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34804 * 116.99538 * 2 1 4 4 O 1.21533 * 120.00206 * 359.97438 * 3 2 1 5 5 C 1.46955 * 119.99661 * 180.27086 * 3 2 1 6 6 C 1.33084 * 120.00048 * 179.72130 * 5 3 2 7 7 C 1.50693 * 119.99835 * 180.02562 * 6 5 3 8 8 O 1.42904 * 109.47338 * 135.00282 * 7 6 5 9 9 C 1.42894 * 114.00291 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47020 * 330.00132 * 9 8 7 11 11 C 1.50699 * 109.46989 * 89.99739 * 9 8 7 12 12 H 1.08005 * 119.99897 * 239.99926 * 11 9 8 13 13 C 1.37878 * 120.00202 * 60.00198 * 11 9 8 14 14 N 1.31515 * 119.99445 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 120.00130 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47174 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46849 * 119.99902 * 15 13 11 18 18 H 1.48507 * 109.46982 * 239.99964 * 15 13 11 19 19 C 1.50704 * 109.47131 * 209.99899 * 9 8 7 20 20 C 1.38235 * 119.99774 * 324.72546 * 19 9 8 21 21 C 1.38230 * 119.99749 * 179.81143 * 20 19 9 22 22 C 1.38245 * 119.99874 * 0.39604 * 21 20 19 23 23 C 1.38232 * 119.99913 * 359.85887 * 22 21 20 24 24 C 1.38228 * 120.00111 * 359.95270 * 23 22 21 25 25 H 1.08998 * 109.47630 * 300.00490 * 1 2 3 26 26 H 1.09004 * 109.46770 * 60.00894 * 1 2 3 27 27 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99739 * 359.72556 * 5 3 2 29 29 H 1.08002 * 119.99683 * 0.02562 * 6 5 3 30 30 H 1.09008 * 109.46982 * 254.99639 * 7 6 5 31 31 H 1.08997 * 109.47657 * 15.00113 * 7 6 5 32 32 H 0.97008 * 119.99401 * 179.97438 * 14 13 11 33 33 H 1.07998 * 119.99740 * 359.97438 * 20 19 9 34 34 H 1.08003 * 120.00423 * 180.23160 * 21 20 19 35 35 H 1.07996 * 119.99440 * 179.83411 * 22 21 20 36 36 H 1.08002 * 119.99327 * 179.97438 * 23 22 21 37 37 H 1.08003 * 119.99843 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2012 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5314 1.2781 -0.0060 6 6 4.1356 2.4639 -0.0116 7 6 5.6404 2.5427 -0.0184 8 8 6.0622 3.5167 -0.9753 9 6 7.4801 3.6711 -1.0612 10 1 7.9288 3.4530 -0.0921 11 6 8.0274 2.7195 -2.0937 12 1 8.7519 1.9712 -1.8081 13 6 7.6032 2.8041 -3.4029 14 7 6.7206 3.7151 -3.7504 15 14 8.2821 1.6250 -4.6828 16 1 9.2527 0.7026 -4.0406 17 1 7.1684 0.8390 -5.2718 18 1 8.9645 2.3956 -5.7532 19 6 7.8080 5.0872 -1.4594 20 6 6.9844 5.7666 -2.3373 21 6 7.2830 7.0668 -2.6995 22 6 8.4098 7.6847 -2.1899 23 6 9.2362 7.0035 -1.3161 24 6 8.9355 5.7046 -0.9509 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 4.1196 0.3723 -0.0060 29 1 3.5473 3.3696 -0.0113 30 1 5.9937 2.8299 0.9721 31 1 6.0541 1.5699 -0.2837 32 1 6.4224 3.7748 -4.6716 33 1 6.1062 5.2824 -2.7383 34 1 6.6375 7.5990 -3.3825 35 1 8.6445 8.6996 -2.4750 36 1 10.1167 7.4862 -0.9184 37 1 9.5815 5.1722 -0.2685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224492477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:14 Heat of formation + Delta-G solvation = -94.655769 kcal Electronic energy + Delta-G solvation = -20615.912035 eV Core-core repulsion = 17323.781928 eV Total energy + Delta-G solvation = -3292.130107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37970 -39.95351 -38.31331 -37.57714 -35.34542 -34.20371 -32.10959 -31.25272 -29.37926 -28.59191 -27.18527 -24.68259 -23.37264 -22.85342 -21.86162 -20.55348 -18.98467 -18.64617 -17.85870 -17.43550 -17.35156 -16.91329 -16.43012 -15.85323 -15.66285 -15.06382 -14.99713 -14.60828 -14.35440 -14.09419 -13.85395 -13.78769 -13.33140 -13.18268 -12.94179 -12.83004 -12.60149 -12.45592 -12.02374 -11.84818 -11.83134 -11.66534 -11.53993 -11.07290 -10.71777 -10.63736 -9.87741 -9.39182 -9.14455 -7.88789 -6.31362 0.03022 0.84359 1.01835 1.39828 1.43674 1.51893 1.70842 1.91468 2.41487 3.10245 3.34575 3.47652 3.87831 4.07739 4.24288 4.31958 4.32066 4.37835 4.40179 4.46385 4.60487 4.67901 4.68709 4.74587 4.92254 5.11292 5.16605 5.24200 5.30118 5.37217 5.49519 5.65553 5.71119 5.90414 6.06771 6.18546 6.36917 6.55558 6.65644 6.67146 7.08045 7.47758 8.90763 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.004741 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.187904 B = 5904.098082 C = 6886.392550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.500 3.500 4 O -0.547 6.547 5 C -0.200 4.200 6 C -0.023 4.023 7 C 0.084 3.916 8 O -0.388 6.388 9 C 0.243 3.757 10 H 0.028 0.972 11 C -0.563 4.563 12 H 0.057 0.943 13 C 0.044 3.956 14 N -0.862 5.862 15 Si 0.943 3.057 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.285 1.285 19 C -0.070 4.070 20 C -0.067 4.067 21 C -0.164 4.164 22 C -0.142 4.142 23 C -0.146 4.146 24 C -0.141 4.141 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.136 0.864 28 H 0.162 0.838 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.258 0.742 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.547 -2.839 6.699 8.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.348 3.652 4 O -0.440 6.440 5 C -0.219 4.219 6 C -0.042 4.042 7 C 0.007 3.993 8 O -0.309 6.309 9 C 0.188 3.812 10 H 0.046 0.954 11 C -0.600 4.600 12 H 0.075 0.925 13 C -0.160 4.160 14 N -0.497 5.497 15 Si 0.769 3.231 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.211 1.211 19 C -0.070 4.070 20 C -0.086 4.086 21 C -0.182 4.182 22 C -0.160 4.160 23 C -0.164 4.164 24 C -0.159 4.159 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.154 0.846 28 H 0.179 0.821 29 H 0.135 0.865 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.153 0.847 34 H 0.135 0.865 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.010 -2.420 6.435 8.507 hybrid contribution 0.205 -0.677 -0.901 1.146 sum -4.805 -3.096 5.534 7.956 Atomic orbital electron populations 1.23587 0.74519 1.05894 1.02544 1.86589 1.25229 1.31749 1.83905 1.21738 0.90417 0.81288 0.71708 1.90827 1.67948 1.37151 1.48025 1.21889 0.89407 1.00326 1.10266 1.23675 0.96390 0.97812 0.86295 1.21396 0.89985 0.94523 0.93384 1.88017 1.25254 1.58309 1.59272 1.18581 0.78721 0.90046 0.93883 0.95409 1.21705 1.26353 1.17163 0.94757 0.92495 1.25599 0.94537 0.95998 0.99840 1.70044 1.29862 1.32166 1.17628 0.85762 0.78368 0.79510 0.79469 1.19132 1.20729 1.21110 1.20136 0.95177 0.94684 0.97025 1.21681 1.01371 0.92209 0.93377 1.21394 0.99048 0.95720 1.02084 1.21238 0.95424 1.00441 0.98882 1.21147 1.00654 0.94622 0.99934 1.21064 0.97314 0.95796 1.01699 0.91645 0.92311 0.84578 0.82066 0.86479 0.90822 0.92235 0.93202 0.84666 0.86550 0.84624 0.84258 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.57 113.37 1.20 1.71 16 2 O -0.36 -9.40 10.58 -57.16 -0.60 -10.01 16 3 C 0.50 15.73 7.91 70.11 0.55 16.28 16 4 O -0.55 -20.19 16.01 19.73 0.32 -19.87 16 5 C -0.20 -6.02 9.75 23.40 0.23 -5.79 16 6 C -0.02 -0.78 9.47 24.53 0.23 -0.55 16 7 C 0.08 3.08 6.16 71.23 0.44 3.52 16 8 O -0.39 -18.45 8.52 -148.98 -1.27 -19.72 16 9 C 0.24 11.73 2.59 29.10 0.08 11.81 16 10 H 0.03 1.24 7.70 -2.39 -0.02 1.23 16 11 C -0.56 -29.33 8.89 25.60 0.23 -29.10 16 12 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 13 C 0.04 2.33 5.24 84.65 0.44 2.78 16 14 N -0.86 -46.71 8.50 21.45 0.18 -46.52 16 15 Si 0.94 42.14 29.54 68.60 2.03 44.17 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 19 C -0.07 -3.30 4.80 -19.86 -0.10 -3.40 16 20 C -0.07 -3.25 7.46 22.27 0.17 -3.08 16 21 C -0.16 -6.79 10.05 22.27 0.22 -6.57 16 22 C -0.14 -5.10 10.05 22.27 0.22 -4.87 16 23 C -0.15 -5.20 10.05 22.27 0.22 -4.98 16 24 C -0.14 -5.77 9.68 22.27 0.22 -5.55 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.14 8.14 -2.38 -0.02 1.13 16 27 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.16 4.06 7.93 -2.91 -0.02 4.04 16 29 H 0.12 4.26 7.49 -2.91 -0.02 4.24 16 30 H 0.07 2.36 8.09 -2.38 -0.02 2.34 16 31 H 0.06 2.17 7.89 -2.39 -0.02 2.15 16 32 H 0.26 13.54 8.31 -92.70 -0.77 12.77 16 33 H 0.14 7.28 5.50 -2.91 -0.02 7.27 16 34 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 37 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -63.45 324.48 6.06 -57.39 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.06 Total: 22.36 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 4.36 Total: -27.79 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.18 Total: -46.52 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -1.56 Total: -49.60 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -63.45 6.06 -57.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224492477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.266 kcal (2) G-P(sol) polarization free energy of solvation -63.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds