Wall clock time and date at job start Mon Mar 30 2020 02:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48498 * 109.47502 * 353.81524 * 3 2 1 5 5 H 1.48509 * 109.47151 * 113.81736 * 3 2 1 6 6 H 1.48500 * 109.47073 * 233.81239 * 3 2 1 7 7 C 1.38816 * 120.00406 * 180.27772 * 2 1 3 8 8 H 1.08002 * 119.99460 * 15.35720 * 7 2 1 9 9 N 1.36933 * 120.00181 * 195.35824 * 7 2 1 10 10 C 1.47022 * 125.65125 * 8.12782 * 9 7 2 11 11 C 1.54322 * 107.27243 * 181.02222 * 10 9 7 12 12 C 1.55157 * 102.94134 * 22.18919 * 11 10 9 13 13 H 1.09007 * 110.99814 * 82.57295 * 12 11 10 14 14 O 1.42905 * 111.00148 * 206.38292 * 12 11 10 15 15 C 1.35654 * 116.99598 * 202.65168 * 14 12 11 16 16 C 1.38706 * 120.15223 * 354.61227 * 15 14 12 17 17 C 1.38057 * 120.08166 * 179.76870 * 16 15 14 18 18 C 1.38547 * 120.39014 * 0.51096 * 17 16 15 19 19 C 1.37781 * 120.29995 * 359.74744 * 18 17 16 20 20 C 1.39712 * 119.91275 * 359.97438 * 19 18 17 21 21 C 1.47533 * 120.19598 * 179.97438 * 20 19 18 22 22 N 1.34771 * 119.99683 * 0.02562 * 21 20 19 23 23 O 1.21584 * 120.00052 * 180.02562 * 21 20 19 24 24 C 1.47420 * 125.64676 * 187.81372 * 9 7 2 25 25 H 0.97003 * 119.99986 * 185.15585 * 1 2 3 26 26 H 1.09004 * 109.87714 * 300.44052 * 10 9 7 27 27 H 1.08996 * 109.88202 * 61.60095 * 10 9 7 28 28 H 1.09000 * 110.71595 * 140.55494 * 11 10 9 29 29 H 1.08996 * 110.71619 * 263.82880 * 11 10 9 30 30 H 1.08004 * 119.95614 * 0.03023 * 16 15 14 31 31 H 1.08004 * 119.80104 * 180.24037 * 17 16 15 32 32 H 1.07995 * 119.84920 * 179.76523 * 18 17 16 33 33 H 1.08003 * 120.04302 * 180.02562 * 19 18 17 34 34 H 0.97007 * 120.00471 * 359.97438 * 22 21 20 35 35 H 0.97005 * 120.00143 * 180.02562 * 22 21 20 36 36 H 1.08998 * 110.37100 * 274.74803 * 24 9 7 37 37 H 1.09001 * 110.36836 * 37.07563 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2922 2.7424 -0.1508 5 1 2.9872 1.7638 1.2809 6 1 3.2135 1.6331 -1.1300 7 6 2.0103 -1.2021 -0.0058 8 1 1.4992 -2.1195 -0.2580 9 7 3.3429 -1.2248 0.3081 10 6 4.1198 -0.0908 0.8297 11 6 5.5741 -0.5752 1.0085 12 6 5.6570 -1.7887 0.0452 13 1 5.8480 -1.4632 -0.9775 14 8 6.6517 -2.7191 0.4779 15 6 7.1657 -3.5521 -0.4613 16 6 6.6471 -3.5564 -1.7477 17 6 7.1745 -4.4014 -2.7037 18 6 8.2162 -5.2573 -2.3846 19 6 8.7400 -5.2700 -1.1103 20 6 8.2196 -4.4161 -0.1346 21 6 8.7754 -4.4249 1.2321 22 7 9.7883 -5.2581 1.5422 23 8 8.3195 -3.6806 2.0785 24 6 4.2348 -2.3921 0.1853 25 1 -0.4850 -0.8367 0.0755 26 1 4.0892 0.7367 0.1208 27 1 3.7139 0.2261 1.7903 28 1 6.2786 0.2018 0.7117 29 1 5.7529 -0.8869 2.0376 30 1 5.8324 -2.8948 -2.0030 31 1 6.7698 -4.3982 -3.7050 32 1 8.6196 -5.9173 -3.1382 33 1 9.5522 -5.9387 -0.8662 34 1 10.1518 -5.8522 0.8669 35 1 10.1535 -5.2642 2.4408 36 1 4.1705 -3.0143 1.0779 37 1 3.9804 -2.9723 -0.7017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225297352.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:19 Heat of formation + Delta-G solvation = -6.026771 kcal Electronic energy + Delta-G solvation = -21326.883356 eV Core-core repulsion = 18070.889241 eV Total energy + Delta-G solvation = -3255.994114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.62894 -39.00249 -37.82772 -36.46586 -33.80964 -32.52532 -31.15366 -30.28267 -29.33560 -28.17160 -24.22479 -24.15802 -22.58491 -21.14104 -20.56157 -20.20435 -18.72054 -17.57063 -17.32200 -16.88428 -15.75857 -15.66751 -15.10313 -15.01401 -14.83908 -14.22875 -14.16282 -13.64420 -13.41059 -13.28837 -12.82422 -12.56088 -12.25851 -12.00722 -11.72512 -11.49257 -11.34759 -11.04728 -10.63740 -10.36557 -9.96458 -9.87893 -9.76342 -9.39116 -9.21298 -9.01123 -8.72422 -8.25430 -7.07878 -6.33098 -3.24118 0.73824 1.28125 2.86228 3.21602 3.41481 3.42287 3.47402 3.70960 3.75681 4.55112 4.61023 4.63542 4.82470 4.91800 4.97161 5.13271 5.17102 5.21835 5.32055 5.39580 5.46802 5.63436 5.75936 5.91289 5.99379 6.13148 6.19946 6.27610 6.36484 6.43737 6.48883 6.62364 6.68828 6.73651 7.21459 7.51437 7.63844 8.25899 8.30765 9.01661 9.52309 10.18198 11.17611 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027814 B = 0.004669 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.450065 B = 5994.948400 C = 6519.954366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.020 4.020 3 Si 1.070 2.930 4 H -0.300 1.300 5 H -0.285 1.285 6 H -0.298 1.298 7 C -0.324 4.324 8 H 0.080 0.920 9 N -0.609 5.609 10 C 0.109 3.891 11 C -0.118 4.118 12 C 0.055 3.945 13 H 0.085 0.915 14 O -0.267 6.267 15 C 0.199 3.801 16 C -0.219 4.219 17 C -0.049 4.049 18 C -0.176 4.176 19 C -0.051 4.051 20 C -0.188 4.188 21 C 0.563 3.437 22 N -0.859 5.859 23 O -0.516 6.516 24 C 0.122 3.878 25 H 0.262 0.738 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.396 0.604 35 H 0.402 0.598 36 H 0.038 0.962 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.739 -11.109 -3.735 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.219 4.219 3 Si 0.904 3.096 4 H -0.229 1.229 5 H -0.213 1.213 6 H -0.227 1.227 7 C -0.451 4.451 8 H 0.097 0.903 9 N -0.338 5.338 10 C -0.016 4.016 11 C -0.156 4.156 12 C -0.002 4.002 13 H 0.103 0.897 14 O -0.177 6.177 15 C 0.149 3.851 16 C -0.237 4.237 17 C -0.067 4.067 18 C -0.194 4.194 19 C -0.069 4.069 20 C -0.192 4.192 21 C 0.349 3.651 22 N -0.425 5.425 23 O -0.392 6.392 24 C -0.005 4.005 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.225 0.775 35 H 0.233 0.767 36 H 0.056 0.944 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 21.033 -8.879 -3.168 23.049 hybrid contribution 0.468 -2.090 -0.249 2.156 sum 21.500 -10.969 -3.417 24.378 Atomic orbital electron populations 1.70890 1.05689 1.29288 1.50852 1.25817 0.96429 1.00880 0.98815 0.83839 0.73163 0.76272 0.76332 1.22866 1.21270 1.22676 1.20181 0.81807 0.96477 1.46610 0.90252 1.44671 1.06585 1.06188 1.76397 1.22056 0.89500 0.91938 0.98056 1.22641 0.97403 0.95251 1.00291 1.24060 0.87833 0.89409 0.98919 0.89722 1.86361 1.52709 1.44982 1.33650 1.19123 0.89713 0.88232 0.87996 1.21503 1.04545 1.04708 0.92978 1.21174 0.93903 0.92676 0.98953 1.20924 0.99542 1.02205 0.96729 1.21052 0.97683 0.95694 0.92499 1.19237 1.01233 1.03609 0.95085 1.18034 0.79448 0.79964 0.87659 1.43750 1.38594 1.43574 1.16559 1.90903 1.59159 1.39598 1.49493 1.22030 0.87445 0.91390 0.99585 0.92794 0.94809 0.92881 0.90613 0.89665 0.84075 0.85276 0.85465 0.85366 0.77467 0.76705 0.94375 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.37 13.70 55.49 0.76 -28.61 16 2 C -0.02 -0.60 5.50 -17.43 -0.10 -0.69 16 3 Si 1.07 27.00 24.52 -169.99 -4.17 22.84 16 4 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 5 H -0.29 -6.62 5.48 56.52 0.31 -6.31 16 6 H -0.30 -7.16 6.76 56.52 0.38 -6.78 16 7 C -0.32 -9.44 10.56 -15.06 -0.16 -9.60 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 9 N -0.61 -15.39 3.34 -169.94 -0.57 -15.96 16 10 C 0.11 2.46 4.63 -3.06 -0.01 2.44 16 11 C -0.12 -2.19 6.68 -24.90 -0.17 -2.35 16 12 C 0.05 1.00 2.81 -24.46 -0.07 0.93 16 13 H 0.08 1.42 6.30 -51.93 -0.33 1.10 16 14 O -0.27 -4.84 8.02 -40.54 -0.33 -5.17 16 15 C 0.20 3.06 6.69 -38.70 -0.26 2.80 16 16 C -0.22 -2.93 8.92 -39.47 -0.35 -3.28 16 17 C -0.05 -0.51 10.03 -39.53 -0.40 -0.90 16 18 C -0.18 -1.56 10.02 -39.63 -0.40 -1.96 16 19 C -0.05 -0.47 9.53 -39.20 -0.37 -0.84 16 20 C -0.19 -2.46 5.89 -104.84 -0.62 -3.08 16 21 C 0.56 7.73 8.04 -12.47 -0.10 7.63 16 22 N -0.86 -7.10 8.82 30.45 0.27 -6.83 16 23 O -0.52 -9.57 16.00 -16.59 -0.27 -9.84 16 24 C 0.12 2.60 6.83 -2.41 -0.02 2.59 16 25 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 26 H 0.03 0.79 3.75 -51.93 -0.19 0.59 16 27 H 0.05 1.24 6.72 -51.93 -0.35 0.89 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.14 1.95 5.60 -52.48 -0.29 1.66 16 31 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 0.68 6.40 -52.48 -0.34 0.34 16 34 H 0.40 1.91 6.86 -40.82 -0.28 1.63 16 35 H 0.40 2.81 8.93 -40.82 -0.36 2.45 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 1.01 7.74 -51.93 -0.40 0.60 16 LS Contribution 299.52 15.07 4.51 4.51 Total: -1.00 -36.18 299.52 -7.15 -43.33 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.35 Total: 2.04 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -3.02 Total: -6.32 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.46 Total: -51.40 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.59 Total: -15.00 kcal Atomic # 14 Polarization: 27.00 SS G_CDS: -4.17 Total: 22.84 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.18 -7.15 -43.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225297352.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.304 kcal (2) G-P(sol) polarization free energy of solvation -36.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds