Wall clock time and date at job start Mon Mar 30 2020 02:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48498 * 109.47502 * 353.81524 * 3 2 1 5 5 H 1.48509 * 109.47151 * 113.81736 * 3 2 1 6 6 H 1.48500 * 109.47073 * 233.81239 * 3 2 1 7 7 C 1.38816 * 120.00406 * 180.27772 * 2 1 3 8 8 H 1.08002 * 119.99460 * 15.35720 * 7 2 1 9 9 N 1.36933 * 120.00181 * 195.35824 * 7 2 1 10 10 C 1.47022 * 125.65125 * 8.12782 * 9 7 2 11 11 C 1.54322 * 107.27243 * 181.02222 * 10 9 7 12 12 C 1.55157 * 102.94134 * 22.18919 * 11 10 9 13 13 H 1.09007 * 110.99814 * 82.57295 * 12 11 10 14 14 O 1.42905 * 111.00148 * 206.38292 * 12 11 10 15 15 C 1.35654 * 116.99598 * 202.65168 * 14 12 11 16 16 C 1.38706 * 120.15223 * 354.61227 * 15 14 12 17 17 C 1.38057 * 120.08166 * 179.76870 * 16 15 14 18 18 C 1.38547 * 120.39014 * 0.51096 * 17 16 15 19 19 C 1.37781 * 120.29995 * 359.74744 * 18 17 16 20 20 C 1.39712 * 119.91275 * 359.97438 * 19 18 17 21 21 C 1.47533 * 120.19598 * 179.97438 * 20 19 18 22 22 N 1.34771 * 119.99683 * 0.02562 * 21 20 19 23 23 O 1.21584 * 120.00052 * 180.02562 * 21 20 19 24 24 C 1.47420 * 125.64676 * 187.81372 * 9 7 2 25 25 H 0.97003 * 119.99986 * 185.15585 * 1 2 3 26 26 H 1.09004 * 109.87714 * 300.44052 * 10 9 7 27 27 H 1.08996 * 109.88202 * 61.60095 * 10 9 7 28 28 H 1.09000 * 110.71595 * 140.55494 * 11 10 9 29 29 H 1.08996 * 110.71619 * 263.82880 * 11 10 9 30 30 H 1.08004 * 119.95614 * 0.03023 * 16 15 14 31 31 H 1.08004 * 119.80104 * 180.24037 * 17 16 15 32 32 H 1.07995 * 119.84920 * 179.76523 * 18 17 16 33 33 H 1.08003 * 120.04302 * 180.02562 * 19 18 17 34 34 H 0.97007 * 120.00471 * 359.97438 * 22 21 20 35 35 H 0.97005 * 120.00143 * 180.02562 * 22 21 20 36 36 H 1.08998 * 110.37100 * 274.74803 * 24 9 7 37 37 H 1.09001 * 110.36836 * 37.07563 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2922 2.7424 -0.1508 5 1 2.9872 1.7638 1.2809 6 1 3.2135 1.6331 -1.1300 7 6 2.0103 -1.2021 -0.0058 8 1 1.4992 -2.1195 -0.2580 9 7 3.3429 -1.2248 0.3081 10 6 4.1198 -0.0908 0.8297 11 6 5.5741 -0.5752 1.0085 12 6 5.6570 -1.7887 0.0452 13 1 5.8480 -1.4632 -0.9775 14 8 6.6517 -2.7191 0.4779 15 6 7.1657 -3.5521 -0.4613 16 6 6.6471 -3.5564 -1.7477 17 6 7.1745 -4.4014 -2.7037 18 6 8.2162 -5.2573 -2.3846 19 6 8.7400 -5.2700 -1.1103 20 6 8.2196 -4.4161 -0.1346 21 6 8.7754 -4.4249 1.2321 22 7 9.7883 -5.2581 1.5422 23 8 8.3195 -3.6806 2.0785 24 6 4.2348 -2.3921 0.1853 25 1 -0.4850 -0.8367 0.0755 26 1 4.0892 0.7367 0.1208 27 1 3.7139 0.2261 1.7903 28 1 6.2786 0.2018 0.7117 29 1 5.7529 -0.8869 2.0376 30 1 5.8324 -2.8948 -2.0030 31 1 6.7698 -4.3982 -3.7050 32 1 8.6196 -5.9173 -3.1382 33 1 9.5522 -5.9387 -0.8662 34 1 10.1518 -5.8522 0.8669 35 1 10.1535 -5.2642 2.4408 36 1 4.1705 -3.0143 1.0779 37 1 3.9804 -2.9723 -0.7017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225297352.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:19 Heat of formation + Delta-G solvation = -33.711125 kcal Electronic energy + Delta-G solvation = -21328.083840 eV Core-core repulsion = 18070.889241 eV Total energy + Delta-G solvation = -3257.194598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.69287 -40.23417 -39.03558 -37.86320 -34.77699 -34.61498 -32.11668 -31.67476 -30.72354 -29.80791 -26.05104 -25.13122 -23.79201 -22.74617 -21.87663 -21.49803 -19.73694 -19.65329 -18.36990 -17.80617 -17.47007 -16.80067 -16.33682 -16.03498 -15.96696 -15.57505 -15.54580 -15.22901 -15.12935 -14.51816 -14.15347 -14.05969 -13.74162 -13.20601 -13.11076 -13.03017 -12.81643 -12.51287 -12.13971 -11.76581 -11.66807 -11.44975 -11.12145 -10.97869 -10.76143 -10.65295 -10.06732 -9.27567 -9.18515 -8.71233 -5.54516 -0.14291 0.39569 1.40062 1.48711 1.70894 1.91832 2.01433 2.52667 2.59264 2.85301 3.04082 3.28376 3.43653 3.66915 3.74442 3.84812 3.85993 4.07124 4.10870 4.21824 4.32259 4.44535 4.56520 4.57505 4.72771 4.79205 4.84479 4.87293 5.04764 5.18207 5.32384 5.42292 5.46993 5.77700 5.93743 6.01366 6.33457 6.53573 6.73759 7.33202 7.40153 7.98783 8.81403 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027814 B = 0.004669 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.450065 B = 5994.948400 C = 6519.954366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.074 4.074 3 Si 1.107 2.893 4 H -0.309 1.309 5 H -0.253 1.253 6 H -0.275 1.275 7 C -0.319 4.319 8 H 0.047 0.953 9 N -0.628 5.628 10 C 0.101 3.899 11 C -0.110 4.110 12 C 0.073 3.927 13 H 0.100 0.900 14 O -0.288 6.288 15 C 0.157 3.843 16 C -0.236 4.236 17 C -0.048 4.048 18 C -0.161 4.161 19 C -0.037 4.037 20 C -0.203 4.203 21 C 0.556 3.444 22 N -0.831 5.831 23 O -0.577 6.577 24 C 0.121 3.879 25 H 0.248 0.752 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.127 0.873 31 H 0.154 0.846 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.416 0.584 35 H 0.411 0.589 36 H 0.022 0.978 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.757 -12.147 -5.191 28.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.267 4.267 3 Si 0.934 3.066 4 H -0.238 1.238 5 H -0.178 1.178 6 H -0.202 1.202 7 C -0.447 4.447 8 H 0.065 0.935 9 N -0.357 5.357 10 C -0.023 4.023 11 C -0.147 4.147 12 C 0.016 3.984 13 H 0.118 0.882 14 O -0.199 6.199 15 C 0.109 3.891 16 C -0.254 4.254 17 C -0.066 4.066 18 C -0.179 4.179 19 C -0.056 4.056 20 C -0.207 4.207 21 C 0.343 3.657 22 N -0.397 5.397 23 O -0.457 6.457 24 C -0.005 4.005 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.145 0.855 31 H 0.171 0.829 32 H 0.187 0.813 33 H 0.191 0.809 34 H 0.249 0.751 35 H 0.243 0.757 36 H 0.040 0.960 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 25.144 -10.008 -4.637 27.457 hybrid contribution -0.690 -2.058 0.125 2.174 sum 24.453 -12.066 -4.512 27.639 Atomic orbital electron populations 1.71000 1.06952 1.28512 1.53807 1.27172 0.96415 1.04520 0.98619 0.83425 0.72683 0.71836 0.78626 1.23755 1.17842 1.20238 1.20072 0.83913 0.95328 1.45365 0.93504 1.44706 1.05985 1.08392 1.76663 1.22193 0.91452 0.91341 0.97299 1.22605 0.95369 0.96315 1.00454 1.23696 0.85990 0.89102 0.99636 0.88226 1.86333 1.52668 1.45852 1.35013 1.19557 0.91566 0.89495 0.88484 1.21503 1.04878 1.05913 0.93154 1.21559 0.93981 0.91769 0.99333 1.21446 0.97929 1.01203 0.97349 1.21566 0.97838 0.94533 0.91627 1.19490 1.01183 1.04259 0.95791 1.18303 0.79960 0.79891 0.87524 1.43494 1.36562 1.42048 1.17605 1.90870 1.61393 1.42367 1.51090 1.22054 0.89436 0.90300 0.98688 0.94307 0.94133 0.93913 0.87116 0.89931 0.85479 0.82871 0.81334 0.80872 0.75100 0.75723 0.96041 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.05 13.70 21.65 0.30 -62.75 16 2 C -0.07 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 1.11 54.25 24.52 68.60 1.68 55.93 16 4 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 5 H -0.25 -11.06 5.48 99.48 0.55 -10.52 16 6 H -0.28 -12.39 6.76 99.48 0.67 -11.72 16 7 C -0.32 -19.26 10.56 84.03 0.89 -18.38 16 8 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 9 N -0.63 -32.31 3.34 -691.56 -2.31 -34.62 16 10 C 0.10 4.46 4.63 86.73 0.40 4.86 16 11 C -0.11 -3.94 6.68 31.78 0.21 -3.72 16 12 C 0.07 2.66 2.81 32.06 0.09 2.75 16 13 H 0.10 3.29 6.30 -2.38 -0.02 3.27 16 14 O -0.29 -10.53 8.02 -68.78 -0.55 -11.09 16 15 C 0.16 4.74 6.69 22.84 0.15 4.89 16 16 C -0.24 -6.08 8.92 22.34 0.20 -5.88 16 17 C -0.05 -0.85 10.03 22.30 0.22 -0.63 16 18 C -0.16 -2.05 10.02 22.24 0.22 -1.83 16 19 C -0.04 -0.52 9.53 22.52 0.21 -0.30 16 20 C -0.20 -4.94 5.89 -20.01 -0.12 -5.06 16 21 C 0.56 14.56 8.04 86.70 0.70 15.25 16 22 N -0.83 -11.36 8.82 -175.83 -1.55 -12.92 16 23 O -0.58 -21.63 16.00 16.94 0.27 -21.35 16 24 C 0.12 5.32 6.83 86.93 0.59 5.92 16 25 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 26 H 0.04 1.78 3.75 -2.38 -0.01 1.77 16 27 H 0.04 1.97 6.72 -2.39 -0.02 1.95 16 28 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.13 3.53 5.60 -2.91 -0.02 3.51 16 31 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.17 0.73 6.40 -2.91 -0.02 0.71 16 34 H 0.42 2.18 6.86 -92.70 -0.64 1.54 16 35 H 0.41 4.75 8.93 -92.70 -0.83 3.92 16 36 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 2.09 7.74 -2.39 -0.02 2.07 16 Total: -1.00 -84.27 299.52 1.51 -82.75 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -0.57 Total: 10.24 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 4.24 Total: -6.21 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -3.56 Total: -110.28 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.28 Total: -32.44 kcal Atomic # 14 Polarization: 54.25 SS G_CDS: 1.68 Total: 55.93 kcal Total: -84.27 1.51 -82.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225297352.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.044 kcal (2) G-P(sol) polarization free energy of solvation -84.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds