Wall clock time and date at job start Mon Mar 30 2020 01:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00527 * 2 1 4 4 H 1.48498 * 109.47207 * 269.99901 * 3 2 1 5 5 H 1.48496 * 109.46938 * 29.99999 * 3 2 1 6 6 H 1.48499 * 109.47116 * 149.99666 * 3 2 1 7 7 C 1.37884 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00045 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00045 * 180.02562 * 7 2 1 10 10 C 1.53514 * 114.16998 * 179.97438 * 9 7 2 11 11 N 1.47482 * 87.93373 * 220.13725 * 10 9 7 12 12 C 1.46900 * 111.00268 * 138.70132 * 11 10 9 13 13 C 1.50695 * 109.47003 * 170.00070 * 12 11 10 14 14 C 1.38059 * 119.50141 * 95.00367 * 13 12 11 15 15 C 1.38786 * 119.20879 * 180.10216 * 14 13 12 16 16 C 1.38787 * 118.42701 * 0.27522 * 15 14 13 17 17 C 1.39160 * 119.28199 * 359.32517 * 16 15 14 18 18 N 1.31908 * 119.50296 * 275.02003 * 13 12 11 19 19 O 1.35986 * 120.50363 * 180.60736 * 17 16 15 20 20 C 1.43147 * 116.74065 * 342.73471 * 19 17 16 21 21 C 1.53460 * 108.32997 * 46.48216 * 20 19 17 22 22 O 1.35955 * 119.64960 * 179.97438 * 16 15 14 23 23 C 1.47484 * 87.83511 * 27.00989 * 11 10 9 24 24 H 0.97008 * 119.99531 * 0.02562 * 1 2 3 25 25 H 1.08996 * 113.25625 * 312.94611 * 9 7 2 26 26 H 1.08996 * 113.47741 * 105.36886 * 10 9 7 27 27 H 1.09000 * 113.53028 * 334.90941 * 10 9 7 28 28 H 1.08995 * 109.47036 * 50.00292 * 12 11 10 29 29 H 1.08997 * 109.47280 * 289.99864 * 12 11 10 30 30 H 1.07999 * 120.39168 * 0.12047 * 14 13 12 31 31 H 1.08002 * 120.78271 * 179.97438 * 15 14 13 32 32 H 1.09002 * 109.69229 * 166.19704 * 20 19 17 33 33 H 1.09007 * 109.69469 * 286.77285 * 20 19 17 34 34 H 1.09002 * 109.71919 * 59.96422 * 21 20 19 35 35 H 1.09003 * 109.71932 * 180.56186 * 21 20 19 36 36 H 1.08994 * 113.47583 * 87.75808 * 23 11 10 37 37 H 1.09003 * 113.47320 * 218.22378 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.1399 -2.5948 0.0000 11 7 5.1457 -2.0852 0.9506 12 6 5.4197 -3.0701 2.0055 13 6 6.6152 -2.6265 2.8086 14 6 6.4238 -1.9147 3.9760 15 6 7.5292 -1.5073 4.7098 16 6 8.7928 -1.8291 4.2345 17 6 8.9112 -2.5565 3.0540 18 7 7.8286 -2.9239 2.3855 19 8 10.1367 -2.8959 2.5723 20 6 11.2565 -2.1721 3.0931 21 6 11.1216 -2.1078 4.6204 22 8 9.8929 -1.4419 4.9332 23 6 4.1437 -1.0989 1.3957 24 1 -0.4850 0.8402 -0.0004 25 1 3.9421 -0.5115 -0.7323 26 1 4.5598 -2.8823 -0.9639 27 1 3.4921 -3.3625 0.4233 28 1 5.6258 -4.0398 1.5526 29 1 4.5522 -3.1519 2.6604 30 1 5.4259 -1.6779 4.3142 31 1 7.4089 -0.9489 5.6263 32 1 12.1810 -2.6846 2.8272 33 1 11.2646 -1.1624 2.6823 34 1 11.1078 -3.1174 5.0312 35 1 11.9596 -1.5515 5.0405 36 1 3.4963 -1.4665 2.1917 37 1 4.5669 -0.1185 1.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233840011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:54 Heat of formation + Delta-G solvation = 13.193769 kcal Electronic energy + Delta-G solvation = -20921.543696 eV Core-core repulsion = 17666.383047 eV Total energy + Delta-G solvation = -3255.160649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.58944 -39.50935 -38.43454 -37.50911 -32.98637 -32.27001 -31.95649 -30.32433 -28.31687 -26.00128 -25.17668 -24.95658 -23.39850 -22.05810 -20.97443 -18.80732 -18.67723 -18.02467 -17.54546 -17.01774 -15.89771 -15.51220 -15.21503 -14.99211 -14.80470 -14.62024 -14.28495 -13.96364 -13.52679 -13.28797 -13.18547 -12.67582 -12.45537 -11.78565 -11.75903 -11.67727 -11.37908 -11.25373 -11.03576 -10.36418 -9.99044 -9.95028 -9.59749 -9.50310 -9.32208 -9.12669 -8.55928 -8.25757 -8.11205 -6.10774 -4.11165 1.02166 1.18169 2.51880 2.83373 3.30384 3.38780 3.44141 3.67034 3.83990 4.27071 4.42402 4.42992 4.53568 4.58602 4.74510 4.91657 5.04129 5.09346 5.16673 5.20604 5.35563 5.48263 5.71754 5.86383 5.91045 6.01087 6.12072 6.29864 6.32654 6.42082 6.48873 6.54507 6.75704 6.98617 7.05335 7.35863 7.67978 7.83692 8.02747 8.48656 8.92562 9.52494 11.01646 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.003877 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.927776 B = 7219.667460 C = 7471.869173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.257 1.257 7 C -0.511 4.511 8 H 0.075 0.925 9 C 0.000 4.000 10 C 0.012 3.988 11 N -0.475 5.475 12 C 0.068 3.932 13 C 0.166 3.834 14 C -0.160 4.160 15 C -0.071 4.071 16 C -0.004 4.004 17 C 0.262 3.738 18 N -0.454 5.454 19 O -0.296 6.296 20 C 0.026 3.974 21 C 0.020 3.980 22 O -0.306 6.306 23 C -0.013 4.013 24 H 0.264 0.736 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.067 0.933 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.871 -3.941 11.067 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.019 4.019 10 C -0.117 4.117 11 N -0.198 5.198 12 C -0.061 4.061 13 C 0.028 3.972 14 C -0.181 4.181 15 C -0.097 4.097 16 C -0.052 4.052 17 C 0.082 3.918 18 N -0.174 5.174 19 O -0.206 6.206 20 C -0.050 4.050 21 C -0.056 4.056 22 O -0.219 6.219 23 C -0.142 4.142 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.145 0.855 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.142 0.858 36 H 0.085 0.915 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.616 -4.105 10.117 24.217 hybrid contribution -0.133 1.111 1.214 1.651 sum 21.483 -2.994 11.331 24.472 Atomic orbital electron populations 1.69912 1.06409 1.27106 1.50197 1.25007 0.94624 0.99216 0.93975 0.86883 0.80743 0.83418 0.78746 1.20282 1.21525 1.18160 1.20920 0.88196 0.94534 1.51198 0.90706 1.20497 0.96197 0.92819 0.92387 1.23809 0.92146 0.99500 0.96229 1.68894 1.31690 1.09391 1.09783 1.21563 0.92358 0.97711 0.94456 1.20867 0.90797 0.93431 0.92094 1.21862 0.99746 1.00181 0.96321 1.20860 0.88613 0.99759 1.00431 1.19626 0.88652 1.03716 0.93190 1.19361 0.86668 0.96692 0.89076 1.66606 0.96923 1.22673 1.31205 1.86205 1.11766 1.58408 1.64178 1.23715 0.88685 0.98692 0.93945 1.23660 0.86444 0.99538 0.95970 1.86262 1.15275 1.60444 1.59962 1.24508 0.92286 0.95992 1.01455 0.92598 0.92590 0.91299 0.91807 0.89548 0.91617 0.83647 0.83681 0.85527 0.90158 0.90363 0.85836 0.91507 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.17 27.14 -169.99 -4.61 16.55 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -5.95 5.68 56.52 0.32 -5.63 16 7 C -0.51 -13.91 9.38 -34.44 -0.32 -14.24 16 8 H 0.07 2.20 8.06 -52.48 -0.42 1.77 16 9 C 0.00 0.01 2.95 -91.24 -0.27 -0.26 16 10 C 0.01 0.23 7.25 -7.54 -0.05 0.18 16 11 N -0.47 -9.27 6.32 -246.08 -1.55 -10.82 16 12 C 0.07 1.13 5.12 -4.98 -0.03 1.10 16 13 C 0.17 2.71 6.36 -82.63 -0.53 2.19 16 14 C -0.16 -2.23 9.71 -39.44 -0.38 -2.62 16 15 C -0.07 -0.91 10.10 -39.18 -0.40 -1.30 16 16 C 0.00 -0.06 6.50 -39.04 -0.25 -0.31 16 17 C 0.26 4.08 7.55 -16.95 -0.13 3.95 16 18 N -0.45 -7.96 10.29 -9.39 -0.10 -8.06 16 19 O -0.30 -4.07 10.51 -32.45 -0.34 -4.41 16 20 C 0.03 0.21 7.24 37.40 0.27 0.48 16 21 C 0.02 0.14 7.27 37.40 0.27 0.42 16 22 O -0.31 -3.53 10.42 -32.35 -0.34 -3.87 16 23 C -0.01 -0.28 6.70 -7.54 -0.05 -0.33 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.06 1.34 7.04 -51.93 -0.37 0.97 16 26 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.24 7.87 -51.93 -0.41 0.84 16 28 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 29 H 0.07 0.99 7.20 -51.93 -0.37 0.62 16 30 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 1.36 7.38 -51.93 -0.38 0.98 16 37 H 0.06 1.34 7.11 -51.93 -0.37 0.97 16 LS Contribution 307.99 15.07 4.64 4.64 Total: -1.00 -32.90 307.99 -8.41 -41.31 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.92 Total: -0.45 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.96 Total: -8.75 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.88 Total: -45.02 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.68 Total: -8.28 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.61 Total: 16.55 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.90 -8.41 -41.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233840011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.505 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds