Wall clock time and date at job start Mon Mar 30 2020 01:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00527 * 2 1 4 4 H 1.48498 * 109.47207 * 269.99901 * 3 2 1 5 5 H 1.48496 * 109.46938 * 29.99999 * 3 2 1 6 6 H 1.48499 * 109.47116 * 149.99666 * 3 2 1 7 7 C 1.37884 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00045 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00045 * 180.02562 * 7 2 1 10 10 C 1.53514 * 114.16998 * 179.97438 * 9 7 2 11 11 N 1.47482 * 87.93373 * 220.13725 * 10 9 7 12 12 C 1.46900 * 111.00268 * 138.70132 * 11 10 9 13 13 C 1.50695 * 109.47003 * 170.00070 * 12 11 10 14 14 C 1.38059 * 119.50141 * 95.00367 * 13 12 11 15 15 C 1.38786 * 119.20879 * 180.10216 * 14 13 12 16 16 C 1.38787 * 118.42701 * 0.27522 * 15 14 13 17 17 C 1.39160 * 119.28199 * 359.32517 * 16 15 14 18 18 N 1.31908 * 119.50296 * 275.02003 * 13 12 11 19 19 O 1.35986 * 120.50363 * 180.60736 * 17 16 15 20 20 C 1.43147 * 116.74065 * 342.73471 * 19 17 16 21 21 C 1.53460 * 108.32997 * 46.48216 * 20 19 17 22 22 O 1.35955 * 119.64960 * 179.97438 * 16 15 14 23 23 C 1.47484 * 87.83511 * 27.00989 * 11 10 9 24 24 H 0.97008 * 119.99531 * 0.02562 * 1 2 3 25 25 H 1.08996 * 113.25625 * 312.94611 * 9 7 2 26 26 H 1.08996 * 113.47741 * 105.36886 * 10 9 7 27 27 H 1.09000 * 113.53028 * 334.90941 * 10 9 7 28 28 H 1.08995 * 109.47036 * 50.00292 * 12 11 10 29 29 H 1.08997 * 109.47280 * 289.99864 * 12 11 10 30 30 H 1.07999 * 120.39168 * 0.12047 * 14 13 12 31 31 H 1.08002 * 120.78271 * 179.97438 * 15 14 13 32 32 H 1.09002 * 109.69229 * 166.19704 * 20 19 17 33 33 H 1.09007 * 109.69469 * 286.77285 * 20 19 17 34 34 H 1.09002 * 109.71919 * 59.96422 * 21 20 19 35 35 H 1.09003 * 109.71932 * 180.56186 * 21 20 19 36 36 H 1.08994 * 113.47583 * 87.75808 * 23 11 10 37 37 H 1.09003 * 113.47320 * 218.22378 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.1399 -2.5948 0.0000 11 7 5.1457 -2.0852 0.9506 12 6 5.4197 -3.0701 2.0055 13 6 6.6152 -2.6265 2.8086 14 6 6.4238 -1.9147 3.9760 15 6 7.5292 -1.5073 4.7098 16 6 8.7928 -1.8291 4.2345 17 6 8.9112 -2.5565 3.0540 18 7 7.8286 -2.9239 2.3855 19 8 10.1367 -2.8959 2.5723 20 6 11.2565 -2.1721 3.0931 21 6 11.1216 -2.1078 4.6204 22 8 9.8929 -1.4419 4.9332 23 6 4.1437 -1.0989 1.3957 24 1 -0.4850 0.8402 -0.0004 25 1 3.9421 -0.5115 -0.7323 26 1 4.5598 -2.8823 -0.9639 27 1 3.4921 -3.3625 0.4233 28 1 5.6258 -4.0398 1.5526 29 1 4.5522 -3.1519 2.6604 30 1 5.4259 -1.6779 4.3142 31 1 7.4089 -0.9489 5.6263 32 1 12.1810 -2.6846 2.8272 33 1 11.2646 -1.1624 2.6823 34 1 11.1078 -3.1174 5.0312 35 1 11.9596 -1.5515 5.0405 36 1 3.4963 -1.4665 2.1917 37 1 4.5669 -0.1185 1.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233840011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:53 Heat of formation + Delta-G solvation = -13.355593 kcal Electronic energy + Delta-G solvation = -20922.694963 eV Core-core repulsion = 17666.383047 eV Total energy + Delta-G solvation = -3256.311916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.52501 -40.93620 -39.61893 -38.39653 -34.83439 -33.52915 -33.11793 -31.40365 -29.64900 -27.48287 -26.67559 -26.03399 -24.75864 -23.26800 -22.05921 -20.41250 -19.73032 -19.12609 -18.90000 -18.43330 -17.01527 -16.72352 -16.54607 -16.21720 -15.89541 -15.56038 -15.48940 -15.40336 -14.82982 -14.61194 -14.48749 -14.21434 -13.77829 -13.39891 -12.97513 -12.92279 -12.68549 -12.37062 -12.12213 -12.03491 -11.80962 -11.69866 -11.38285 -11.07377 -10.62982 -10.55768 -10.38653 -9.74462 -9.24320 -8.26765 -6.31298 -0.03933 0.14770 1.39656 1.42371 1.54633 1.65380 2.04791 2.39840 2.56416 3.05854 3.06631 3.30517 3.50383 3.54663 3.83885 3.90837 4.02336 4.11973 4.17213 4.19113 4.35997 4.40069 4.52522 4.56344 4.60740 4.68050 4.73837 4.81369 4.92226 4.98506 5.06209 5.29255 5.44157 5.49835 5.60710 5.65786 6.12747 6.26201 6.32825 6.74464 6.94837 7.35675 8.89100 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.003877 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.927776 B = 7219.667460 C = 7471.869173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.019 3.981 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.239 1.239 7 C -0.511 4.511 8 H 0.039 0.961 9 C -0.015 4.015 10 C 0.020 3.980 11 N -0.478 5.478 12 C 0.071 3.929 13 C 0.143 3.857 14 C -0.159 4.159 15 C -0.070 4.070 16 C 0.000 4.000 17 C 0.244 3.756 18 N -0.490 5.490 19 O -0.320 6.320 20 C 0.017 3.983 21 C 0.015 3.985 22 O -0.312 6.312 23 C 0.001 3.999 24 H 0.266 0.734 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.175 0.825 32 H 0.163 0.837 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.164 0.836 36 H 0.070 0.930 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.605 -3.067 12.689 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.162 1.162 7 C -0.549 4.549 8 H 0.057 0.943 9 C -0.034 4.034 10 C -0.109 4.109 11 N -0.200 5.200 12 C -0.058 4.058 13 C 0.005 3.995 14 C -0.180 4.180 15 C -0.096 4.096 16 C -0.048 4.048 17 C 0.064 3.936 18 N -0.211 5.211 19 O -0.230 6.230 20 C -0.058 4.058 21 C -0.059 4.059 22 O -0.226 6.226 23 C -0.129 4.129 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.181 0.819 31 H 0.192 0.808 32 H 0.181 0.819 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.182 0.818 36 H 0.089 0.911 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.389 -3.247 11.747 27.265 hybrid contribution -0.849 0.737 0.732 1.341 sum 23.540 -2.511 12.478 26.761 Atomic orbital electron populations 1.70049 1.08246 1.28126 1.52273 1.25831 0.95292 1.02974 0.93819 0.85863 0.80076 0.78803 0.78960 1.20003 1.21286 1.16176 1.21121 0.90408 0.93130 1.50208 0.94314 1.20479 0.93608 0.95126 0.94204 1.23693 0.92181 0.97810 0.97193 1.68842 1.30619 1.09956 1.10615 1.21548 0.93408 0.96855 0.93966 1.20816 0.90320 0.95104 0.93246 1.22050 1.01049 0.99326 0.95526 1.21218 0.87983 0.99276 1.01094 1.19726 0.89842 1.02597 0.92624 1.19558 0.86883 0.97300 0.89849 1.66485 0.97902 1.23968 1.32743 1.86169 1.12196 1.59530 1.65145 1.24146 0.88184 0.98940 0.94514 1.24051 0.85774 1.00544 0.95564 1.86254 1.15904 1.60855 1.59599 1.24272 0.92304 0.96654 0.99625 0.92490 0.92921 0.90398 0.91547 0.89442 0.90215 0.81907 0.80784 0.81948 0.90135 0.89667 0.81849 0.91148 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 2 C 0.02 1.06 5.47 84.66 0.46 1.52 16 3 Si 0.94 43.48 27.14 68.60 1.86 45.34 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.24 -10.22 5.68 99.48 0.56 -9.66 16 7 C -0.51 -28.27 9.38 25.60 0.24 -28.03 16 8 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 9 C -0.01 -0.68 2.95 -11.20 -0.03 -0.71 16 10 C 0.02 0.78 7.25 83.58 0.61 1.39 16 11 N -0.48 -18.06 6.32 -932.46 -5.89 -23.95 16 12 C 0.07 2.27 5.12 85.56 0.44 2.71 16 13 C 0.14 4.50 6.36 42.50 0.27 4.77 16 14 C -0.16 -4.11 9.71 22.36 0.22 -3.89 16 15 C -0.07 -1.62 10.10 22.53 0.23 -1.40 16 16 C 0.00 0.01 6.50 22.62 0.15 0.15 16 17 C 0.24 7.37 7.55 84.82 0.64 8.01 16 18 N -0.49 -16.96 10.29 -296.22 -3.05 -20.01 16 19 O -0.32 -8.46 10.51 -81.20 -0.85 -9.31 16 20 C 0.02 0.24 7.24 72.14 0.52 0.76 16 21 C 0.02 0.17 7.27 72.14 0.52 0.70 16 22 O -0.31 -6.34 10.42 -80.85 -0.84 -7.19 16 23 C 0.00 0.02 6.70 83.58 0.56 0.58 16 24 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 25 H 0.05 2.46 7.04 -2.39 -0.02 2.45 16 26 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.07 2.58 7.87 -2.39 -0.02 2.56 16 28 H 0.09 2.74 8.08 -2.39 -0.02 2.73 16 29 H 0.08 2.30 7.20 -2.39 -0.02 2.28 16 30 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 31 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.11 8.14 -2.38 -0.02 1.10 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 2.77 7.38 -2.39 -0.02 2.75 16 37 H 0.06 2.57 7.11 -2.39 -0.02 2.55 16 Total: -1.00 -72.50 307.99 -2.71 -75.21 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.93 Total: 11.02 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 4.82 Total: -13.43 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -8.64 Total: -101.64 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -1.70 Total: -16.50 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.86 Total: 45.34 kcal Total: -72.50 -2.71 -75.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233840011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.856 kcal (2) G-P(sol) polarization free energy of solvation -72.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds