Wall clock time and date at job start Mon Mar 30 2020 02:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99589 * 2 1 4 4 H 1.48501 * 109.46975 * 240.00216 * 3 2 1 5 5 H 1.48499 * 109.47505 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47149 * 120.00418 * 3 2 1 7 7 C 1.38803 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00548 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99966 * 0.27440 * 7 2 1 10 10 C 1.47024 * 125.64868 * 359.41421 * 9 7 2 11 11 C 1.54333 * 107.26835 * 178.85189 * 10 9 7 12 12 C 1.55156 * 103.01862 * 338.14205 * 11 10 9 13 13 H 1.09005 * 111.03729 * 277.21627 * 12 11 10 14 14 O 1.42905 * 111.00590 * 153.38451 * 12 11 10 15 15 C 1.35765 * 117.00018 * 162.35073 * 14 12 11 16 16 C 1.38595 * 120.14259 * 5.30599 * 15 14 12 17 17 C 1.38153 * 120.08751 * 179.74785 * 16 15 14 18 18 C 1.38474 * 120.37486 * 0.50734 * 17 16 15 19 19 C 1.37871 * 120.28585 * 359.77161 * 18 17 16 20 20 C 1.39653 * 119.90078 * 359.97133 * 19 18 17 21 21 C 1.47473 * 120.18487 * 180.02562 * 20 19 18 22 22 N 1.29408 * 120.00101 * 179.97438 * 21 20 19 23 23 O 1.41596 * 119.99970 * 180.02562 * 22 21 20 24 24 C 1.47426 * 125.64785 * 179.72444 * 9 7 2 25 25 H 0.96991 * 120.00516 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.87980 * 298.39899 * 10 9 7 27 27 H 1.08995 * 109.88155 * 59.56222 * 10 9 7 28 28 H 1.08996 * 110.85157 * 219.67498 * 11 10 9 29 29 H 1.09000 * 110.66802 * 96.51818 * 11 10 9 30 30 H 1.07993 * 119.95203 * 359.97438 * 16 15 14 31 31 H 1.07991 * 119.80862 * 180.25445 * 17 16 15 32 32 H 1.08006 * 119.85712 * 179.74535 * 18 17 16 33 33 H 1.07997 * 120.05219 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.00025 * 359.97438 * 21 20 19 35 35 H 0.96701 * 114.00169 * 180.02562 * 23 22 21 36 36 H 1.08993 * 110.37270 * 322.92675 * 24 9 7 37 37 H 1.08999 * 110.37088 * 85.25664 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1037 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3879 -0.0067 10 6 -0.1374 -2.5328 -0.0010 11 6 -0.4482 -4.0440 -0.0411 12 6 0.8518 -4.6528 -0.6298 13 1 0.8565 -4.5877 -1.7179 14 8 1.0250 -6.0045 -0.1996 15 6 1.8933 -6.7705 -0.9085 16 6 2.6475 -6.2075 -1.9259 17 6 3.5345 -6.9869 -2.6431 18 6 3.6695 -8.3355 -2.3593 19 6 2.9228 -8.9128 -1.3543 20 6 2.0265 -8.1347 -0.6184 21 6 1.2250 -8.7456 0.4583 22 7 0.3959 -8.0212 1.1384 23 8 -0.3733 -8.6076 2.1725 24 6 1.9337 -3.7310 -0.0138 25 1 -0.4850 0.8399 0.0004 26 1 -0.5500 -2.0914 0.9061 27 1 -0.5615 -2.0456 -0.8789 28 1 -1.2986 -4.2480 -0.6917 29 1 -0.6324 -4.4257 0.9632 30 1 2.5443 -5.1574 -2.1558 31 1 4.1229 -6.5427 -3.4322 32 1 4.3625 -8.9379 -2.9280 33 1 3.0308 -9.9650 -1.1365 34 1 1.3299 -9.7975 0.6793 35 1 -0.9637 -7.9883 2.6231 36 1 2.8329 -3.7372 -0.6298 37 1 2.1672 -4.0471 1.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234820839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:14 Heat of formation + Delta-G solvation = 35.603433 kcal Electronic energy + Delta-G solvation = -21111.674950 eV Core-core repulsion = 17857.486057 eV Total energy + Delta-G solvation = -3254.188893 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18550 -37.95375 -36.68595 -36.06222 -33.58461 -32.28121 -30.48759 -29.70901 -28.97830 -27.38360 -24.60828 -23.74181 -22.60180 -20.62618 -20.26248 -19.88620 -17.87045 -17.69175 -16.99687 -15.90340 -15.56494 -15.22499 -14.89200 -14.66014 -14.39581 -13.90086 -13.65605 -13.48248 -13.44382 -12.77709 -12.41417 -12.34864 -11.95301 -11.70898 -11.53854 -11.04178 -10.96714 -10.79091 -10.41962 -10.32917 -10.24626 -10.09963 -9.88176 -9.76782 -9.68596 -8.71292 -8.64212 -7.94705 -6.90024 -5.75473 -3.10198 0.83524 1.46374 2.48217 3.08094 3.38670 3.41074 3.43904 3.47132 3.84692 4.47048 4.57272 4.87817 4.97210 5.15257 5.23007 5.30647 5.38518 5.48687 5.53907 5.56502 5.63927 5.74097 5.91077 6.17329 6.22187 6.31620 6.37508 6.43719 6.47080 6.59013 6.63874 6.76150 6.83635 7.49659 7.54848 7.68003 7.77380 7.81757 8.19876 9.16495 9.76252 10.40977 11.36202 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.004625 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.792819 B = 6052.988547 C = 7006.470663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.179 3.821 11 C -0.131 4.131 12 C 0.060 3.940 13 H 0.079 0.921 14 O -0.273 6.273 15 C 0.177 3.823 16 C -0.215 4.215 17 C -0.060 4.060 18 C -0.172 4.172 19 C -0.052 4.052 20 C -0.106 4.106 21 C 0.135 3.865 22 N -0.295 5.295 23 O -0.425 6.425 24 C 0.119 3.881 25 H 0.254 0.746 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.118 0.882 35 H 0.406 0.594 36 H 0.042 0.958 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -17.350 -3.467 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.054 3.946 11 C -0.169 4.169 12 C 0.003 3.997 13 H 0.097 0.903 14 O -0.182 6.182 15 C 0.127 3.873 16 C -0.233 4.233 17 C -0.079 4.079 18 C -0.190 4.190 19 C -0.073 4.073 20 C -0.108 4.108 21 C -0.075 4.075 22 N -0.037 5.037 23 O -0.333 6.333 24 C -0.007 4.007 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.156 0.844 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.135 0.865 35 H 0.254 0.746 36 H 0.061 0.939 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.957 -16.796 -3.263 17.364 hybrid contribution 0.381 0.614 0.198 0.749 sum 3.338 -16.182 -3.065 16.805 Atomic orbital electron populations 1.69929 1.04914 1.25326 1.56779 1.24805 0.95735 0.97702 1.01977 0.86171 0.78455 0.83011 0.77947 1.21108 1.21520 1.21100 1.19009 0.90455 0.82178 1.44306 0.90389 1.44330 1.01670 0.99548 1.87418 1.21207 0.84412 0.87334 1.01639 1.22968 0.94470 0.98585 1.00878 1.23916 0.98913 0.78145 0.98680 0.90348 1.86335 1.56685 1.23347 1.51853 1.19267 0.88466 0.90026 0.89555 1.21487 1.00781 1.01825 0.99239 1.21110 0.95681 0.93621 0.97534 1.20878 1.02603 0.95329 1.00238 1.20946 0.93378 0.99079 0.93859 1.17695 1.02544 0.90725 0.99851 1.24033 0.92936 0.97497 0.93014 1.76980 1.04165 1.24112 0.98394 1.88327 1.57575 1.39223 1.48201 1.21968 0.94194 0.86621 0.97946 0.93573 0.93340 0.93058 0.91511 0.91082 0.84367 0.85638 0.85665 0.85080 0.86467 0.74570 0.93944 0.95302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 10.31 55.49 0.57 -26.28 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.44 3.39 -170.07 -0.58 -16.02 16 10 C 0.18 4.33 5.38 -3.06 -0.02 4.32 16 11 C -0.13 -2.53 6.68 -24.89 -0.17 -2.70 16 12 C 0.06 1.12 2.82 -24.58 -0.07 1.05 16 13 H 0.08 1.39 6.61 -51.93 -0.34 1.05 16 14 O -0.27 -4.79 7.83 -19.00 -0.15 -4.94 16 15 C 0.18 2.73 6.65 -38.75 -0.26 2.47 16 16 C -0.21 -3.00 8.72 -39.48 -0.34 -3.34 16 17 C -0.06 -0.68 10.03 -39.53 -0.40 -1.07 16 18 C -0.17 -1.69 10.02 -39.63 -0.40 -2.08 16 19 C -0.05 -0.53 9.78 -39.19 -0.38 -0.92 16 20 C -0.11 -1.42 5.88 -104.91 -0.62 -2.03 16 21 C 0.14 1.83 10.90 -14.81 -0.16 1.67 16 22 N -0.30 -4.64 9.97 32.10 0.32 -4.32 16 23 O -0.42 -5.81 14.95 -11.47 -0.17 -5.98 16 24 C 0.12 2.55 6.60 -2.53 -0.02 2.53 16 25 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.05 1.29 7.53 -51.93 -0.39 0.90 16 27 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.14 2.02 5.30 -52.49 -0.28 1.74 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.41 3.93 9.28 45.56 0.42 4.35 16 36 H 0.04 0.87 7.24 -51.93 -0.38 0.49 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -32.45 312.69 -7.25 -39.70 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -3.85 Total: 3.17 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -3.08 Total: -6.97 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.32 Total: -46.62 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.32 Total: -10.92 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.45 -7.25 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234820839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.303 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds