Wall clock time and date at job start Mon Mar 30 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99589 * 2 1 4 4 H 1.48501 * 109.46975 * 240.00216 * 3 2 1 5 5 H 1.48499 * 109.47505 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47149 * 120.00418 * 3 2 1 7 7 C 1.38803 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00548 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99966 * 0.27440 * 7 2 1 10 10 C 1.47024 * 125.64868 * 359.41421 * 9 7 2 11 11 C 1.54333 * 107.26835 * 178.85189 * 10 9 7 12 12 C 1.55156 * 103.01862 * 338.14205 * 11 10 9 13 13 H 1.09005 * 111.03729 * 277.21627 * 12 11 10 14 14 O 1.42905 * 111.00590 * 153.38451 * 12 11 10 15 15 C 1.35765 * 117.00018 * 162.35073 * 14 12 11 16 16 C 1.38595 * 120.14259 * 5.30599 * 15 14 12 17 17 C 1.38153 * 120.08751 * 179.74785 * 16 15 14 18 18 C 1.38474 * 120.37486 * 0.50734 * 17 16 15 19 19 C 1.37871 * 120.28585 * 359.77161 * 18 17 16 20 20 C 1.39653 * 119.90078 * 359.97133 * 19 18 17 21 21 C 1.47473 * 120.18487 * 180.02562 * 20 19 18 22 22 N 1.29408 * 120.00101 * 179.97438 * 21 20 19 23 23 O 1.41596 * 119.99970 * 180.02562 * 22 21 20 24 24 C 1.47426 * 125.64785 * 179.72444 * 9 7 2 25 25 H 0.96991 * 120.00516 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.87980 * 298.39899 * 10 9 7 27 27 H 1.08995 * 109.88155 * 59.56222 * 10 9 7 28 28 H 1.08996 * 110.85157 * 219.67498 * 11 10 9 29 29 H 1.09000 * 110.66802 * 96.51818 * 11 10 9 30 30 H 1.07993 * 119.95203 * 359.97438 * 16 15 14 31 31 H 1.07991 * 119.80862 * 180.25445 * 17 16 15 32 32 H 1.08006 * 119.85712 * 179.74535 * 18 17 16 33 33 H 1.07997 * 120.05219 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.00025 * 359.97438 * 21 20 19 35 35 H 0.96701 * 114.00169 * 180.02562 * 23 22 21 36 36 H 1.08993 * 110.37270 * 322.92675 * 24 9 7 37 37 H 1.08999 * 110.37088 * 85.25664 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1037 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3879 -0.0067 10 6 -0.1374 -2.5328 -0.0010 11 6 -0.4482 -4.0440 -0.0411 12 6 0.8518 -4.6528 -0.6298 13 1 0.8565 -4.5877 -1.7179 14 8 1.0250 -6.0045 -0.1996 15 6 1.8933 -6.7705 -0.9085 16 6 2.6475 -6.2075 -1.9259 17 6 3.5345 -6.9869 -2.6431 18 6 3.6695 -8.3355 -2.3593 19 6 2.9228 -8.9128 -1.3543 20 6 2.0265 -8.1347 -0.6184 21 6 1.2250 -8.7456 0.4583 22 7 0.3959 -8.0212 1.1384 23 8 -0.3733 -8.6076 2.1725 24 6 1.9337 -3.7310 -0.0138 25 1 -0.4850 0.8399 0.0004 26 1 -0.5500 -2.0914 0.9061 27 1 -0.5615 -2.0456 -0.8789 28 1 -1.2986 -4.2480 -0.6917 29 1 -0.6324 -4.4257 0.9632 30 1 2.5443 -5.1574 -2.1558 31 1 4.1229 -6.5427 -3.4322 32 1 4.3625 -8.9379 -2.9280 33 1 3.0308 -9.9650 -1.1365 34 1 1.3299 -9.7975 0.6793 35 1 -0.9637 -7.9883 2.6231 36 1 2.8329 -3.7372 -0.6298 37 1 2.1672 -4.0471 1.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234820839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:13 Heat of formation + Delta-G solvation = 13.865006 kcal Electronic energy + Delta-G solvation = -21112.617599 eV Core-core repulsion = 17857.486057 eV Total energy + Delta-G solvation = -3255.131542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33675 -39.29988 -37.72477 -37.56315 -34.64174 -34.19876 -31.52183 -31.24214 -30.29937 -29.09085 -26.54887 -24.72303 -23.79473 -22.21025 -21.64898 -21.26032 -19.07745 -18.97008 -18.68872 -17.05600 -16.71052 -16.55138 -16.53314 -16.05061 -15.69101 -15.24367 -15.11321 -14.64249 -14.43217 -14.27002 -13.98011 -13.92185 -13.54323 -13.04762 -12.89948 -12.67485 -12.50377 -12.18571 -12.09998 -12.06240 -11.87350 -11.56242 -11.47504 -11.37919 -10.78252 -10.73900 -9.64998 -9.03446 -8.95118 -7.88779 -5.26648 -0.10053 0.52638 1.45705 1.49269 1.52372 1.55674 2.09855 2.22276 2.49500 2.92232 3.30096 3.60002 3.61251 3.69099 3.91994 3.98275 4.05716 4.19442 4.33109 4.46295 4.50716 4.57288 4.64361 4.75150 4.81110 4.92637 5.01478 5.05918 5.31503 5.39111 5.47123 5.55784 5.60035 5.67356 5.87196 5.91351 6.12515 6.50146 6.88464 7.04183 7.69088 8.33487 9.21553 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.004625 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.792819 B = 6052.988547 C = 7006.470663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.061 4.061 3 Si 0.982 3.018 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.083 0.917 9 N -0.622 5.622 10 C 0.188 3.812 11 C -0.118 4.118 12 C 0.082 3.918 13 H 0.086 0.914 14 O -0.284 6.284 15 C 0.140 3.860 16 C -0.233 4.233 17 C -0.060 4.060 18 C -0.160 4.160 19 C -0.040 4.040 20 C -0.119 4.119 21 C 0.139 3.861 22 N -0.339 5.339 23 O -0.430 6.430 24 C 0.121 3.879 25 H 0.250 0.750 26 H 0.014 0.986 27 H 0.024 0.976 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.147 0.853 35 H 0.418 0.582 36 H 0.050 0.950 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -19.680 -4.655 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.254 4.254 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.101 0.899 9 N -0.350 5.350 10 C 0.063 3.937 11 C -0.156 4.156 12 C 0.025 3.975 13 H 0.103 0.897 14 O -0.194 6.194 15 C 0.092 3.908 16 C -0.252 4.252 17 C -0.079 4.079 18 C -0.178 4.178 19 C -0.060 4.060 20 C -0.122 4.122 21 C -0.071 4.071 22 N -0.081 5.081 23 O -0.341 6.341 24 C -0.004 4.004 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.140 0.860 31 H 0.166 0.834 32 H 0.182 0.818 33 H 0.189 0.811 34 H 0.164 0.836 35 H 0.268 0.732 36 H 0.068 0.932 37 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.834 -19.162 -4.451 20.258 hybrid contribution -0.090 1.183 0.529 1.299 sum 4.743 -17.980 -3.923 19.004 Atomic orbital electron populations 1.70149 1.06343 1.25672 1.57695 1.25678 0.96650 1.01068 1.02002 0.85105 0.77157 0.78451 0.78309 1.19952 1.21803 1.20409 1.19415 0.91047 0.83402 1.44005 0.89922 1.44608 1.02423 1.00647 1.87286 1.20929 0.83813 0.90314 0.98624 1.22766 0.95937 0.95061 1.01821 1.23469 0.96635 0.78873 0.98549 0.89662 1.86305 1.58072 1.22264 1.52784 1.19644 0.89464 0.90925 0.90814 1.21478 1.02117 1.01554 1.00008 1.21461 0.94724 0.94381 0.97340 1.21367 1.02054 0.94824 0.99533 1.21443 0.91375 1.00630 0.92508 1.18043 1.03492 0.90138 1.00489 1.24413 0.91747 0.98773 0.92120 1.76936 1.05753 1.25666 0.99748 1.88279 1.57865 1.39860 1.48055 1.22014 0.95423 0.85421 0.97588 0.94123 0.96798 0.95754 0.89216 0.90817 0.85964 0.83392 0.81847 0.81131 0.83567 0.73160 0.93169 0.96516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.29 10.31 21.65 0.22 -57.07 16 2 C -0.06 -3.47 5.49 84.86 0.47 -3.01 16 3 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.25 -14.26 10.28 84.03 0.86 -13.40 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.62 -33.00 3.39 -691.98 -2.35 -35.35 16 10 C 0.19 9.55 5.38 86.73 0.47 10.02 16 11 C -0.12 -4.66 6.68 31.79 0.21 -4.45 16 12 C 0.08 3.09 2.82 31.99 0.09 3.18 16 13 H 0.09 3.07 6.61 -2.38 -0.02 3.06 16 14 O -0.28 -10.02 7.83 -90.92 -0.71 -10.73 16 15 C 0.14 4.21 6.65 22.81 0.15 4.37 16 16 C -0.23 -6.28 8.72 22.33 0.19 -6.08 16 17 C -0.06 -1.17 10.03 22.31 0.22 -0.95 16 18 C -0.16 -2.38 10.02 22.24 0.22 -2.15 16 19 C -0.04 -0.64 9.78 22.52 0.22 -0.42 16 20 C -0.12 -2.93 5.88 -20.05 -0.12 -3.05 16 21 C 0.14 3.49 10.90 87.49 0.95 4.45 16 22 N -0.34 -10.45 9.97 -52.34 -0.52 -10.97 16 23 O -0.43 -11.52 14.95 -38.77 -0.58 -12.10 16 24 C 0.12 5.32 6.60 86.86 0.57 5.89 16 25 H 0.25 14.60 8.31 -92.72 -0.77 13.83 16 26 H 0.01 0.78 7.53 -2.39 -0.02 0.77 16 27 H 0.02 1.34 7.36 -2.39 -0.02 1.33 16 28 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.12 3.60 5.30 -2.91 -0.02 3.59 16 31 H 0.15 2.15 8.06 -2.92 -0.02 2.12 16 32 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.42 8.08 9.28 -74.06 -0.69 7.39 16 36 H 0.05 2.09 7.24 -2.39 -0.02 2.07 16 37 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -72.72 312.69 3.01 -69.71 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.40 Total: 14.35 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 4.52 Total: -5.59 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -2.65 Total: -103.39 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -1.29 Total: -22.83 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.72 3.01 -69.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234820839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.575 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds