Wall clock time and date at job start Mon Mar 30 2020 01:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00294 * 2 1 4 4 H 1.48507 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47104 * 299.99958 * 3 2 1 6 6 H 1.48496 * 109.47104 * 60.00379 * 3 2 1 7 7 C 1.37878 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00138 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47379 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47156 * 179.97438 * 10 9 7 12 12 C 1.46896 * 110.99732 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.73366 * 31.59894 * 12 11 10 14 14 C 1.54345 * 110.82314 * 267.97312 * 12 11 10 15 15 C 1.51376 * 105.16925 * 215.43019 * 14 12 11 16 16 C 1.38495 * 130.39065 * 197.14490 * 15 14 12 17 17 C 1.38106 * 120.21493 * 180.02562 * 16 15 14 18 18 C 1.38255 * 119.93333 * 0.02562 * 17 16 15 19 19 N 1.48025 * 120.02942 * 179.97438 * 18 17 16 20 20 O 1.21796 * 119.99824 * 0.02562 * 19 18 17 21 21 O 1.21794 * 119.99468 * 180.02562 * 19 18 17 22 22 C 1.38101 * 119.93318 * 359.97438 * 18 17 16 23 23 C 1.38215 * 109.75737 * 17.18695 * 15 14 12 24 24 C 1.51368 * 109.76221 * 0.02562 * 23 15 14 25 25 H 0.97004 * 119.99032 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47630 * 60.00234 * 9 7 2 27 27 H 1.09002 * 109.47260 * 300.00205 * 9 7 2 28 28 H 1.09004 * 109.46496 * 60.00044 * 10 9 7 29 29 H 1.08993 * 109.47232 * 300.00268 * 10 9 7 30 30 H 1.00903 * 110.99881 * 56.04516 * 11 10 9 31 31 H 1.08997 * 110.30414 * 334.35018 * 14 12 11 32 32 H 1.08998 * 110.30350 * 96.41163 * 14 12 11 33 33 H 1.08003 * 119.88958 * 0.04841 * 16 15 14 34 34 H 1.07998 * 120.02915 * 180.27290 * 17 16 15 35 35 H 1.08000 * 119.88601 * 179.97438 * 22 18 17 36 36 H 1.08994 * 110.30313 * 101.73594 * 24 23 15 37 37 H 1.09000 * 110.30293 * 223.79312 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5105 -4.9343 0.0001 12 6 2.4349 -6.0759 0.0007 13 1 3.3525 -5.8292 0.5348 14 6 2.7406 -6.5352 -1.4408 15 6 2.8731 -8.0408 -1.3571 16 6 3.4391 -8.9425 -2.2429 17 6 3.4448 -10.2925 -1.9517 18 6 2.8834 -10.7463 -0.7725 19 7 2.8879 -12.1928 -0.4585 20 8 3.3867 -12.9838 -1.2388 21 8 2.3927 -12.5919 0.5803 22 6 2.3185 -9.8486 0.1120 23 6 2.3119 -8.4944 -0.1782 24 6 1.7634 -7.3249 0.6107 25 1 -0.4849 0.8402 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 2.8717 -3.6044 0.8895 29 1 2.8718 -3.6045 -0.8904 30 1 0.8738 -4.9846 -0.7811 31 1 1.9208 -6.2641 -2.1060 32 1 3.6728 -6.0909 -1.7896 33 1 3.8778 -8.5888 -3.1642 34 1 3.8910 -10.9926 -2.6425 35 1 1.8798 -10.2040 1.0327 36 1 0.6810 -7.2666 0.4973 37 1 2.0281 -7.4216 1.6637 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254579853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:35 Heat of formation + Delta-G solvation = -6.140483 kcal Electronic energy + Delta-G solvation = -19944.086111 eV Core-core repulsion = 16688.087065 eV Total energy + Delta-G solvation = -3255.999045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.30401 -41.46008 -38.30484 -37.72216 -35.94573 -34.44396 -33.01867 -31.56385 -29.56144 -28.73081 -26.69631 -25.74241 -23.54731 -22.56765 -22.41916 -21.77659 -19.86215 -19.71699 -18.65428 -18.51406 -17.22148 -16.97548 -16.55361 -16.39665 -15.87849 -15.30338 -14.84073 -14.73019 -14.51251 -14.04846 -13.90546 -13.52558 -13.40004 -13.03675 -12.88612 -12.78084 -12.62631 -12.36688 -12.34720 -12.34448 -12.23502 -12.19412 -11.91258 -11.37322 -11.21884 -10.56342 -10.38299 -10.03324 -9.28606 -8.19991 -6.30617 -1.27892 -0.06943 0.24856 0.32556 1.41005 1.42032 1.54323 2.20706 2.40737 2.95908 3.14378 3.17818 3.50072 3.51677 3.68195 3.84369 3.96577 4.12982 4.17619 4.43886 4.55080 4.58152 4.65504 4.67759 4.71465 4.76031 4.85662 4.99012 5.02273 5.10610 5.12803 5.25555 5.46197 5.48230 5.70602 5.80787 6.14977 6.28057 6.44547 6.53817 6.88059 7.39016 8.92173 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.057274 B = 0.002584 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.764382 B =10835.234403 C =11102.604372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.029 3.971 10 C 0.085 3.915 11 N -0.686 5.686 12 C 0.089 3.911 13 H 0.092 0.908 14 C -0.115 4.115 15 C -0.033 4.033 16 C -0.099 4.099 17 C -0.052 4.052 18 C -0.064 4.064 19 N 0.034 4.966 20 O -0.171 6.171 21 O -0.191 6.191 22 C -0.048 4.048 23 C -0.093 4.093 24 C -0.069 4.069 25 H 0.263 0.737 26 H -0.007 1.007 27 H -0.007 1.007 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.344 0.656 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.176 0.824 34 H 0.170 0.830 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.589 -18.779 -4.751 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.044 4.044 11 N -0.317 5.317 12 C -0.022 4.022 13 H 0.110 0.890 14 C -0.154 4.154 15 C -0.034 4.034 16 C -0.117 4.117 17 C -0.071 4.071 18 C -0.148 4.148 19 N 0.548 4.452 20 O -0.387 6.387 21 O -0.402 6.402 22 C -0.067 4.067 23 C -0.095 4.095 24 C -0.107 4.107 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.011 0.989 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.164 0.836 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.193 0.807 34 H 0.188 0.812 35 H 0.172 0.828 36 H 0.113 0.887 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.340 -17.984 -4.174 19.868 hybrid contribution 0.249 0.427 -0.626 0.798 sum 7.590 -17.557 -4.800 19.721 Atomic orbital electron populations 1.70109 1.07790 1.27654 1.51678 1.25948 0.95718 1.03310 0.94825 0.85421 0.79158 0.78925 0.77664 1.18453 1.20483 1.20647 1.21658 0.93592 0.92252 1.50443 0.92011 1.18947 0.94433 0.92362 0.95144 1.21803 0.95505 0.87867 0.99188 1.60445 1.19406 1.01384 1.50416 1.22291 0.95461 0.90156 0.94285 0.89001 1.22041 1.04548 0.89578 0.99198 1.21211 0.92110 0.96915 0.93122 1.20980 0.99589 0.90012 1.01128 1.21200 0.94842 0.97446 0.93629 1.21064 1.13618 0.78689 1.01394 1.43875 0.97472 1.04312 0.99543 1.94501 1.46210 1.52526 1.45480 1.94535 1.47408 1.83546 1.14678 1.20469 0.95594 0.91426 0.99231 1.20617 0.98997 0.92689 0.97149 1.21095 1.01383 0.88609 0.99586 0.92831 0.98833 0.98854 0.92282 0.95383 0.83642 0.88221 0.88419 0.80678 0.81212 0.82777 0.88686 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 3 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.54 -29.39 9.11 25.60 0.23 -29.15 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.42 5.23 29.85 0.16 1.58 16 10 C 0.08 3.11 5.49 86.30 0.47 3.59 16 11 N -0.69 -19.87 6.35 -486.81 -3.09 -22.96 16 12 C 0.09 1.87 3.41 45.84 0.16 2.02 16 13 H 0.09 1.97 7.83 -2.39 -0.02 1.95 16 14 C -0.12 -1.88 6.45 30.52 0.20 -1.68 16 15 C -0.03 -0.50 6.14 -19.59 -0.12 -0.62 16 16 C -0.10 -1.21 10.04 22.30 0.22 -0.99 16 17 C -0.05 -0.77 9.55 22.24 0.21 -0.55 16 18 C -0.06 -1.27 6.85 36.35 0.25 -1.02 16 19 N 0.03 0.82 4.45 -46.52 -0.21 0.61 16 20 O -0.17 -4.29 18.45 18.89 0.35 -3.94 16 21 O -0.19 -5.12 18.45 18.89 0.35 -4.77 16 22 C -0.05 -0.89 9.55 22.30 0.21 -0.68 16 23 C -0.09 -1.62 6.14 -19.60 -0.12 -1.74 16 24 C -0.07 -1.27 6.49 30.52 0.20 -1.08 16 25 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 26 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.06 2.18 8.08 -2.38 -0.02 2.16 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.34 9.54 8.08 -89.69 -0.72 8.81 16 31 H 0.10 1.60 7.56 -2.39 -0.02 1.58 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.17 1.89 7.62 -2.91 -0.02 1.86 16 35 H 0.15 2.66 7.60 -2.91 -0.02 2.63 16 36 H 0.09 1.82 8.08 -2.39 -0.02 1.80 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -64.91 321.44 2.61 -62.30 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.36 Total: 8.88 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 2.53 Total: -29.87 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -3.01 Total: -77.44 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.70 Total: -8.71 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -64.91 2.61 -62.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254579853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.164 kcal (2) G-P(sol) polarization free energy of solvation -64.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds