Wall clock time and date at job start Mon Mar 30 2020 02:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99941 * 2 1 4 4 H 1.48498 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47360 * 300.00299 * 3 2 1 6 6 H 1.48503 * 109.46909 * 60.00390 * 3 2 1 7 7 C 1.37879 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99742 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64334 * 56.86383 * 9 7 2 11 11 C 1.55156 * 110.87393 * 293.60798 * 9 7 2 12 12 C 1.54908 * 101.58197 * 206.06598 * 11 9 7 13 13 N 1.47422 * 104.83357 * 37.01425 * 12 11 9 14 14 C 1.34774 * 125.65171 * 155.91447 * 13 12 11 15 15 O 1.21281 * 120.00298 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.99741 * 359.94939 * 14 13 12 17 17 C 1.50701 * 109.47003 * 179.97438 * 16 14 13 18 18 C 1.38675 * 120.41870 * 89.99574 * 17 16 14 19 19 C 1.38621 * 118.41924 * 180.02562 * 18 17 16 20 20 C 1.38223 * 119.16382 * 359.97438 * 19 18 17 21 21 N 1.31854 * 120.76098 * 0.02562 * 20 19 18 22 22 C 1.31878 * 121.72641 * 359.70497 * 21 20 19 23 23 C 1.47031 * 108.70136 * 335.86884 * 13 12 11 24 24 H 0.97002 * 119.99750 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99455 * 303.13943 * 10 9 7 26 26 H 1.08999 * 111.00338 * 324.14539 * 11 9 7 27 27 H 1.09000 * 110.99867 * 87.95188 * 11 9 7 28 28 H 1.09000 * 110.36459 * 155.84880 * 12 11 9 29 29 H 1.09001 * 110.36573 * 278.06223 * 12 11 9 30 30 H 1.09001 * 109.46804 * 299.99539 * 16 14 13 31 31 H 1.08991 * 109.47098 * 59.99762 * 16 14 13 32 32 H 1.08006 * 120.78840 * 359.97438 * 18 17 16 33 33 H 1.08007 * 120.41862 * 180.02562 * 19 18 17 34 34 H 1.08006 * 119.62008 * 180.02562 * 20 19 18 35 35 H 1.08007 * 119.61965 * 180.31154 * 22 21 20 36 36 H 1.08998 * 109.88059 * 241.64343 * 23 13 12 37 37 H 1.08994 * 109.87878 * 120.47623 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.3657 -2.5697 -1.1200 11 6 0.4723 -2.6879 1.3281 12 6 0.3768 -4.2315 1.4161 13 7 1.6634 -4.7200 0.8875 14 6 2.2280 -5.9104 1.1710 15 8 3.2943 -6.2091 0.6762 16 6 1.5347 -6.8703 2.1032 17 6 2.3679 -8.1172 2.2512 18 6 3.3261 -8.2070 3.2496 19 6 4.0695 -9.3730 3.3477 20 6 3.8322 -10.4002 2.4538 21 7 2.9126 -10.2798 1.5166 22 6 2.1833 -9.1875 1.3970 23 6 2.2281 -3.6937 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 -0.2689 -1.8414 -1.1659 26 1 1.0328 -2.2824 2.1704 27 1 -0.5183 -2.2373 1.2676 28 1 0.2488 -4.5452 2.4521 29 1 -0.4491 -4.5959 0.8052 30 1 1.4064 -6.4007 3.0785 31 1 0.5587 -7.1323 1.6949 32 1 3.4899 -7.3877 3.9340 33 1 4.8239 -9.4777 4.1134 34 1 4.4068 -11.3121 2.5238 35 1 1.4356 -9.1273 0.6198 36 1 2.3267 -4.0914 -1.0112 37 1 3.2021 -3.3762 0.3712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328568957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:20 Heat of formation + Delta-G solvation = -50.755132 kcal Electronic energy + Delta-G solvation = -21020.402670 eV Core-core repulsion = 17762.468988 eV Total energy + Delta-G solvation = -3257.933682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38656 -39.29379 -37.31050 -34.38328 -33.53649 -32.20022 -31.95456 -29.98186 -28.67291 -27.60778 -25.04365 -23.60590 -22.81175 -21.96378 -19.78395 -18.79680 -17.35648 -17.12815 -16.67642 -16.48399 -15.58532 -15.19831 -14.99887 -14.63507 -14.24912 -13.85540 -13.58977 -13.35936 -13.09752 -13.01050 -12.56389 -12.10452 -11.98378 -11.64550 -11.52775 -11.45324 -11.38711 -10.95100 -10.67093 -10.50740 -10.18241 -9.88202 -9.57336 -9.50471 -9.41841 -8.95899 -8.71694 -8.26923 -8.07912 -6.35177 -4.42326 1.05751 1.25732 2.97919 3.15234 3.24626 3.29010 3.42956 3.85740 4.22499 4.37150 4.65525 4.73360 4.89035 4.93166 4.96375 4.98956 5.27130 5.38767 5.48147 5.61339 5.71191 5.72535 5.85423 5.95181 6.04129 6.14750 6.21814 6.40873 6.62837 6.65188 6.83795 6.90409 7.23655 7.27960 7.68387 7.92843 7.94709 8.04227 8.54706 8.60995 9.26325 9.40170 10.72677 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.040848 B = 0.003682 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.301638 B = 7602.093661 C = 7803.515535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.587 6.587 11 C -0.137 4.137 12 C 0.094 3.906 13 N -0.608 5.608 14 C 0.522 3.478 15 O -0.548 6.548 16 C -0.095 4.095 17 C -0.109 4.109 18 C -0.063 4.063 19 C -0.172 4.172 20 C 0.091 3.909 21 N -0.485 5.485 22 C 0.112 3.888 23 C 0.122 3.878 24 H 0.269 0.731 25 H 0.386 0.614 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.061 0.939 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 -12.298 8.258 14.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.397 6.397 11 C -0.176 4.176 12 C -0.028 4.028 13 N -0.341 5.341 14 C 0.310 3.690 15 O -0.427 6.427 16 C -0.136 4.136 17 C -0.111 4.111 18 C -0.089 4.089 19 C -0.192 4.192 20 C -0.066 4.066 21 N -0.194 5.194 22 C -0.045 4.045 23 C 0.001 3.999 24 H 0.079 0.921 25 H 0.238 0.762 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.079 0.921 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.886 -13.639 7.298 15.494 hybrid contribution 0.184 2.283 0.802 2.427 sum 1.070 -11.356 8.100 13.989 Atomic orbital electron populations 1.69581 1.05969 1.27677 1.50551 1.24996 0.95047 0.99601 0.93416 0.86341 0.80174 0.82609 0.77753 1.19575 1.20707 1.20793 1.21591 0.93791 0.90224 1.51697 0.91648 1.19442 0.86168 0.90783 0.82889 1.86100 1.51431 1.53325 1.48858 1.23316 1.02886 0.90289 1.01137 1.22511 0.85235 0.97796 0.97272 1.48657 1.22518 1.16128 1.46795 1.19973 0.85482 0.81141 0.82401 1.90696 1.22345 1.75881 1.53779 1.20591 0.99243 0.92584 1.01179 1.20363 0.98034 0.95935 0.96792 1.21454 0.93238 0.97382 0.96792 1.22083 1.01080 0.94734 1.01329 1.22717 0.94615 0.98512 0.90776 1.67667 1.05870 1.25279 1.20553 1.22598 0.97027 0.88322 0.96544 1.22092 0.97406 0.87528 0.92905 0.92115 0.76156 0.91448 0.89581 0.92104 0.91725 0.87914 0.87773 0.84989 0.84887 0.82982 0.82995 0.92063 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.50 10.71 55.43 0.59 -21.91 16 2 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 3 Si 0.90 19.89 29.54 -169.99 -5.02 14.86 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.53 -13.71 8.22 -34.44 -0.28 -13.99 16 8 H 0.07 1.69 7.53 -52.49 -0.40 1.30 16 9 C 0.25 5.82 0.86 -89.94 -0.08 5.74 16 10 O -0.59 -14.51 13.09 -35.23 -0.46 -14.97 16 11 C -0.14 -2.82 5.68 -24.58 -0.14 -2.96 16 12 C 0.09 1.58 6.68 -2.53 -0.02 1.57 16 13 N -0.61 -11.46 3.33 -170.52 -0.57 -12.03 16 14 C 0.52 9.26 7.84 -10.98 -0.09 9.18 16 15 O -0.55 -11.77 16.36 5.56 0.09 -11.68 16 16 C -0.10 -1.19 4.86 -29.03 -0.14 -1.34 16 17 C -0.11 -1.43 4.39 -104.48 -0.46 -1.88 16 18 C -0.06 -0.74 9.86 -39.28 -0.39 -1.13 16 19 C -0.17 -1.83 10.11 -39.45 -0.40 -2.23 16 20 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 21 N -0.49 -6.73 10.36 -13.25 -0.14 -6.87 16 22 C 0.11 1.51 10.86 -17.55 -0.19 1.32 16 23 C 0.12 2.71 6.22 -3.06 -0.02 2.69 16 24 H 0.27 6.44 8.31 -40.82 -0.34 6.11 16 25 H 0.39 9.63 6.98 45.56 0.32 9.95 16 26 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 27 H 0.09 1.83 7.78 -51.93 -0.40 1.43 16 28 H 0.06 0.81 7.48 -51.93 -0.39 0.43 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.10 1.06 7.80 -51.93 -0.41 0.65 16 31 H 0.10 1.09 8.09 -51.93 -0.42 0.66 16 32 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.15 1.81 8.06 -52.48 -0.42 1.38 16 36 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 37 H 0.07 1.61 7.63 -51.93 -0.40 1.22 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -29.96 314.84 -7.42 -37.39 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -4.18 Total: 10.94 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.49 Total: -0.48 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.11 Total: -40.80 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.37 Total: -26.65 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.96 -7.42 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328568957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.369 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds