Wall clock time and date at job start Mon Mar 30 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99941 * 2 1 4 4 H 1.48498 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47360 * 300.00299 * 3 2 1 6 6 H 1.48503 * 109.46909 * 60.00390 * 3 2 1 7 7 C 1.37879 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99742 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64334 * 56.86383 * 9 7 2 11 11 C 1.55156 * 110.87393 * 293.60798 * 9 7 2 12 12 C 1.54908 * 101.58197 * 206.06598 * 11 9 7 13 13 N 1.47422 * 104.83357 * 37.01425 * 12 11 9 14 14 C 1.34774 * 125.65171 * 155.91447 * 13 12 11 15 15 O 1.21281 * 120.00298 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.99741 * 359.94939 * 14 13 12 17 17 C 1.50701 * 109.47003 * 179.97438 * 16 14 13 18 18 C 1.38675 * 120.41870 * 89.99574 * 17 16 14 19 19 C 1.38621 * 118.41924 * 180.02562 * 18 17 16 20 20 C 1.38223 * 119.16382 * 359.97438 * 19 18 17 21 21 N 1.31854 * 120.76098 * 0.02562 * 20 19 18 22 22 C 1.31878 * 121.72641 * 359.70497 * 21 20 19 23 23 C 1.47031 * 108.70136 * 335.86884 * 13 12 11 24 24 H 0.97002 * 119.99750 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99455 * 303.13943 * 10 9 7 26 26 H 1.08999 * 111.00338 * 324.14539 * 11 9 7 27 27 H 1.09000 * 110.99867 * 87.95188 * 11 9 7 28 28 H 1.09000 * 110.36459 * 155.84880 * 12 11 9 29 29 H 1.09001 * 110.36573 * 278.06223 * 12 11 9 30 30 H 1.09001 * 109.46804 * 299.99539 * 16 14 13 31 31 H 1.08991 * 109.47098 * 59.99762 * 16 14 13 32 32 H 1.08006 * 120.78840 * 359.97438 * 18 17 16 33 33 H 1.08007 * 120.41862 * 180.02562 * 19 18 17 34 34 H 1.08006 * 119.62008 * 180.02562 * 20 19 18 35 35 H 1.08007 * 119.61965 * 180.31154 * 22 21 20 36 36 H 1.08998 * 109.88059 * 241.64343 * 23 13 12 37 37 H 1.08994 * 109.87878 * 120.47623 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.3657 -2.5697 -1.1200 11 6 0.4723 -2.6879 1.3281 12 6 0.3768 -4.2315 1.4161 13 7 1.6634 -4.7200 0.8875 14 6 2.2280 -5.9104 1.1710 15 8 3.2943 -6.2091 0.6762 16 6 1.5347 -6.8703 2.1032 17 6 2.3679 -8.1172 2.2512 18 6 3.3261 -8.2070 3.2496 19 6 4.0695 -9.3730 3.3477 20 6 3.8322 -10.4002 2.4538 21 7 2.9126 -10.2798 1.5166 22 6 2.1833 -9.1875 1.3970 23 6 2.2281 -3.6937 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 -0.2689 -1.8414 -1.1659 26 1 1.0328 -2.2824 2.1704 27 1 -0.5183 -2.2373 1.2676 28 1 0.2488 -4.5452 2.4521 29 1 -0.4491 -4.5959 0.8052 30 1 1.4064 -6.4007 3.0785 31 1 0.5587 -7.1323 1.6949 32 1 3.4899 -7.3877 3.9340 33 1 4.8239 -9.4777 4.1134 34 1 4.4068 -11.3121 2.5238 35 1 1.4356 -9.1273 0.6198 36 1 2.3267 -4.0914 -1.0112 37 1 3.2021 -3.3762 0.3712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328568957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:19 Heat of formation + Delta-G solvation = -71.612904 kcal Electronic energy + Delta-G solvation = -21021.307131 eV Core-core repulsion = 17762.468988 eV Total energy + Delta-G solvation = -3258.838143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46519 -40.62094 -38.93737 -36.11424 -34.54580 -34.15162 -32.84034 -31.57014 -30.19668 -28.89373 -26.77849 -24.49741 -24.17537 -23.12487 -21.51547 -20.22028 -19.21122 -18.12269 -17.98191 -17.48117 -16.97883 -16.90842 -16.43183 -16.00031 -15.73404 -15.28824 -14.82679 -14.60762 -14.25466 -13.98803 -13.93321 -13.82999 -13.37667 -13.24096 -13.15322 -13.00616 -12.66555 -12.46056 -12.41818 -12.27411 -11.99000 -11.29407 -11.06433 -10.69970 -10.61657 -10.40859 -10.13505 -9.89911 -9.62433 -8.26845 -6.40661 0.15990 0.37162 1.39537 1.44435 1.53991 1.61653 2.05398 2.39107 2.89757 2.98804 3.49925 3.65291 3.76405 3.91069 3.93326 4.02689 4.09962 4.12598 4.31146 4.42133 4.50381 4.55028 4.60430 4.68613 4.77275 4.88012 4.93197 5.18748 5.19471 5.25178 5.32822 5.46686 5.53826 5.76350 5.80112 6.05566 6.58637 6.65919 7.03431 7.14315 7.30542 7.44712 8.79581 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.040848 B = 0.003682 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.301638 B = 7602.093661 C = 7803.515535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.038 3.962 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.564 4.564 8 H 0.050 0.950 9 C 0.234 3.766 10 O -0.595 6.595 11 C -0.129 4.129 12 C 0.103 3.897 13 N -0.611 5.611 14 C 0.520 3.480 15 O -0.592 6.592 16 C -0.082 4.082 17 C -0.125 4.125 18 C -0.074 4.074 19 C -0.169 4.169 20 C 0.081 3.919 21 N -0.514 5.514 22 C 0.092 3.908 23 C 0.129 3.871 24 H 0.273 0.727 25 H 0.383 0.617 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.157 0.843 36 H 0.038 0.962 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 -12.909 10.240 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.164 4.164 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.602 4.602 8 H 0.068 0.932 9 C 0.194 3.806 10 O -0.406 6.406 11 C -0.168 4.168 12 C -0.018 4.018 13 N -0.344 5.344 14 C 0.310 3.690 15 O -0.473 6.473 16 C -0.121 4.121 17 C -0.127 4.127 18 C -0.100 4.100 19 C -0.189 4.189 20 C -0.076 4.076 21 N -0.223 5.223 22 C -0.064 4.064 23 C 0.005 3.995 24 H 0.083 0.917 25 H 0.234 0.766 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.168 0.832 33 H 0.183 0.817 34 H 0.197 0.803 35 H 0.174 0.826 36 H 0.057 0.943 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.459 -14.262 9.296 17.031 hybrid contribution 0.374 2.440 0.162 2.473 sum 0.833 -11.823 9.458 15.163 Atomic orbital electron populations 1.69628 1.06491 1.28450 1.50040 1.25577 0.95886 1.01909 0.92996 0.85492 0.78684 0.79387 0.77935 1.20193 1.20484 1.19863 1.21793 0.93417 0.91939 1.53021 0.93161 1.19603 0.86569 0.90448 0.83979 1.86085 1.51510 1.53064 1.49909 1.23101 1.01509 0.93356 0.98856 1.22566 0.84318 0.94738 1.00192 1.48725 1.23167 1.16085 1.46417 1.20964 0.84955 0.80897 0.82158 1.90675 1.24530 1.76613 1.55518 1.20613 0.99415 0.90942 1.01177 1.20477 0.98933 0.95936 0.97386 1.21827 0.92909 0.98413 0.96827 1.22462 1.01079 0.93849 1.01495 1.23274 0.94140 0.99907 0.90250 1.67666 1.06956 1.25828 1.21848 1.22802 0.97649 0.88833 0.97155 1.21763 0.96836 0.88271 0.92581 0.91730 0.76586 0.92117 0.90480 0.87330 0.90738 0.84753 0.85189 0.83243 0.81705 0.80324 0.82551 0.94330 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.22 10.71 21.45 0.23 -44.99 16 2 C 0.04 1.89 5.28 84.65 0.45 2.34 16 3 Si 0.96 40.75 29.54 68.60 2.03 42.78 16 4 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.56 -29.49 8.22 25.60 0.21 -29.28 16 8 H 0.05 2.70 7.53 -2.91 -0.02 2.68 16 9 C 0.23 11.15 0.86 -10.35 -0.01 11.14 16 10 O -0.60 -29.93 13.09 -148.98 -1.95 -31.88 16 11 C -0.13 -5.19 5.68 31.99 0.18 -5.01 16 12 C 0.10 3.20 6.68 86.86 0.58 3.78 16 13 N -0.61 -22.36 3.33 -811.78 -2.70 -25.06 16 14 C 0.52 17.70 7.84 87.66 0.69 18.39 16 15 O -0.59 -25.45 16.36 -3.03 -0.05 -25.50 16 16 C -0.08 -1.79 4.86 29.10 0.14 -1.65 16 17 C -0.12 -3.02 4.39 -19.77 -0.09 -3.10 16 18 C -0.07 -1.57 9.86 22.47 0.22 -1.35 16 19 C -0.17 -3.14 10.11 22.36 0.23 -2.92 16 20 C 0.08 1.70 11.18 84.69 0.95 2.65 16 21 N -0.51 -13.77 10.36 -195.84 -2.03 -15.80 16 22 C 0.09 2.40 10.86 84.67 0.92 3.32 16 23 C 0.13 5.83 6.22 86.73 0.54 6.37 16 24 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 25 H 0.38 19.38 6.98 -74.06 -0.52 18.86 16 26 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 27 H 0.08 3.22 7.78 -2.39 -0.02 3.20 16 28 H 0.11 2.38 7.48 -2.39 -0.02 2.36 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.13 2.12 7.80 -2.39 -0.02 2.10 16 31 H 0.13 2.21 8.09 -2.39 -0.02 2.19 16 32 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 33 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 36 H 0.04 1.87 8.07 -2.39 -0.02 1.85 16 37 H 0.06 2.66 7.63 -2.39 -0.02 2.64 16 Total: -1.00 -66.37 314.84 1.10 -65.27 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.57 Total: 30.49 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.01 Total: 4.68 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -4.50 Total: -85.85 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -2.00 Total: -57.37 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -66.37 1.10 -65.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328568957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.341 kcal (2) G-P(sol) polarization free energy of solvation -66.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds