Wall clock time and date at job start Mon Mar 30 2020 02:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 120.00488 * 2 1 4 4 H 1.48494 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46946 * 300.00331 * 3 2 1 6 6 H 1.48502 * 109.46929 * 59.99669 * 3 2 1 7 7 C 1.38898 * 119.99302 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99718 * 202.19411 * 7 2 1 9 9 N 1.37205 * 120.00336 * 22.19887 * 7 2 1 10 10 C 1.34774 * 120.00015 * 211.47303 * 9 7 2 11 11 O 1.21271 * 120.00437 * 187.20558 * 10 9 7 12 12 C 1.50703 * 120.00085 * 7.20831 * 10 9 7 13 13 C 1.52998 * 109.47466 * 186.26647 * 12 10 9 14 14 H 1.08995 * 110.75195 * 302.98237 * 13 12 10 15 15 C 1.55568 * 110.84033 * 179.30695 * 13 12 10 16 16 C 1.54946 * 100.82479 * 207.68951 * 15 13 12 17 17 O 1.43642 * 105.22616 * 36.43558 * 16 15 13 18 18 C 1.43237 * 109.97239 * 335.53092 * 17 16 15 19 19 C 1.39431 * 120.00113 * 31.47265 * 9 7 2 20 20 C 1.39068 * 119.69574 * 196.04915 * 19 9 7 21 21 C 1.38376 * 119.09372 * 179.73480 * 20 19 9 22 22 C 1.38830 * 118.49610 * 0.53049 * 21 20 19 23 23 C 1.38145 * 119.30705 * 359.72961 * 22 21 20 24 24 N 1.31884 * 120.85509 * 0.02562 * 23 22 21 25 25 H 0.97001 * 119.99256 * 4.62848 * 1 2 3 26 26 H 1.09002 * 109.46865 * 66.26803 * 12 10 9 27 27 H 1.08999 * 109.47244 * 306.26970 * 12 10 9 28 28 H 1.08993 * 111.22291 * 89.78866 * 15 13 12 29 29 H 1.09001 * 111.12800 * 325.54201 * 15 13 12 30 30 H 1.09001 * 110.30618 * 277.47396 * 16 15 13 31 31 H 1.08997 * 110.30840 * 155.40885 * 16 15 13 32 32 H 1.08998 * 109.83410 * 121.22020 * 18 17 16 33 33 H 1.09004 * 109.82644 * 242.19579 * 18 17 16 34 34 H 1.07999 * 120.44838 * 359.97438 * 20 19 9 35 35 H 1.08001 * 120.75115 * 180.26184 * 21 20 19 36 36 H 1.07994 * 120.34962 * 179.75772 * 22 21 20 37 37 H 1.08003 * 119.57328 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3963 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0085 -1.2030 -0.0005 8 1 3.0285 -1.2379 0.3528 9 7 1.3987 -2.3469 -0.4500 10 6 1.7299 -3.5405 0.0813 11 8 1.2905 -4.5623 -0.4019 12 6 2.6463 -3.6053 1.2759 13 6 2.9845 -5.0660 1.5807 14 1 2.0768 -5.6457 1.7480 15 6 3.9448 -5.1689 2.8002 16 6 4.6828 -6.4928 2.4785 17 8 4.8361 -6.5018 1.0504 18 6 3.8289 -5.6828 0.4450 19 6 0.4363 -2.2747 -1.4563 20 6 -0.4110 -3.3550 -1.6781 21 6 -1.3652 -3.2678 -2.6764 22 6 -1.4321 -2.1030 -3.4288 23 6 -0.5546 -1.0711 -3.1572 24 7 0.3415 -1.1808 -2.1958 25 1 -0.4849 0.8374 -0.0678 26 1 2.1509 -3.1595 2.1385 27 1 3.5635 -3.0573 1.0604 28 1 3.3890 -5.2460 3.7347 29 1 4.6386 -4.3286 2.8260 30 1 4.0862 -7.3463 2.8004 31 1 5.6586 -6.5095 2.9640 32 1 4.2978 -4.8910 -0.1391 33 1 3.1943 -6.2923 -0.1984 34 1 -0.3279 -4.2482 -1.0767 35 1 -2.0398 -4.0890 -2.8688 36 1 -2.1627 -2.0043 -4.2180 37 1 -0.6031 -0.1629 -3.7396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331414023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:53 Heat of formation + Delta-G solvation = -39.479970 kcal Electronic energy + Delta-G solvation = -21757.553266 eV Core-core repulsion = 18500.108512 eV Total energy + Delta-G solvation = -3257.444754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.74970 -40.44310 -39.42378 -36.82713 -34.51359 -33.70824 -32.85273 -31.40874 -30.47983 -27.96668 -27.00510 -24.30976 -23.94041 -23.22901 -21.85923 -20.90272 -19.61497 -18.24483 -17.75529 -17.14509 -16.99580 -16.66409 -16.64657 -16.03442 -15.77858 -15.46164 -15.23347 -14.77613 -14.38672 -14.09963 -13.86947 -13.82438 -13.44181 -13.12593 -12.97425 -12.76239 -12.60959 -12.45294 -12.11153 -12.07734 -11.78679 -11.63370 -11.35614 -10.79654 -10.51312 -10.37707 -10.23503 -9.81845 -8.95580 -8.27018 -6.08587 0.47834 0.73612 1.41307 1.49629 1.59123 1.92813 2.24762 2.61179 2.99428 3.09821 3.51837 3.53457 3.81485 3.97003 4.04282 4.08037 4.21928 4.31400 4.40434 4.50810 4.53529 4.57914 4.73274 4.76253 4.82537 4.87576 4.96327 5.01165 5.11489 5.17011 5.31680 5.34966 5.47796 5.56665 5.72076 6.06082 6.08597 6.45547 7.01741 7.15528 7.70719 7.84191 8.72714 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.006576 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.079686 B = 4256.722919 C = 5568.475519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.047 3.953 3 Si 0.975 3.025 4 H -0.257 1.257 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.386 4.386 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.469 3.531 11 O -0.585 6.585 12 C -0.096 4.096 13 C -0.100 4.100 14 H 0.082 0.918 15 C -0.142 4.142 16 C 0.045 3.955 17 O -0.410 6.410 18 C 0.065 3.935 19 C 0.357 3.643 20 C -0.235 4.235 21 C -0.071 4.071 22 C -0.220 4.220 23 C 0.097 3.903 24 N -0.495 5.495 25 H 0.267 0.733 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.147 0.853 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 -4.932 2.857 6.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.162 4.162 3 Si 0.799 3.201 4 H -0.181 1.181 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.512 4.512 8 H 0.126 0.874 9 N -0.100 5.100 10 C 0.262 3.738 11 O -0.470 6.470 12 C -0.135 4.135 13 C -0.119 4.119 14 H 0.101 0.899 15 C -0.179 4.179 16 C -0.031 4.031 17 O -0.330 6.330 18 C -0.011 4.011 19 C 0.128 3.872 20 C -0.258 4.258 21 C -0.097 4.097 22 C -0.242 4.242 23 C -0.063 4.063 24 N -0.209 5.209 25 H 0.077 0.923 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.176 0.824 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.480 -4.760 2.842 6.546 hybrid contribution -0.777 0.592 -0.343 1.035 sum 2.703 -4.168 2.499 5.561 Atomic orbital electron populations 1.70030 1.08237 1.28818 1.42168 1.25799 0.95184 1.02304 0.92876 0.85194 0.79394 0.78196 0.77272 1.18083 1.21102 1.20495 1.19656 0.98070 0.85894 1.47540 0.87427 1.41500 1.33160 1.07838 1.27460 1.21419 0.84279 0.81947 0.86115 1.90395 1.57686 1.35037 1.63901 1.21368 0.99358 0.97181 0.95620 1.22481 0.99253 0.94832 0.95370 0.89926 1.23382 0.98018 0.98531 0.98018 1.23590 1.01874 0.97346 0.80293 1.88340 1.53528 1.70148 1.20988 1.23015 0.88919 0.93546 0.95628 1.18762 0.90305 0.89809 0.88282 1.22613 0.98306 1.01526 1.03360 1.21650 0.95972 0.98395 0.93712 1.22106 1.03357 0.94737 1.03972 1.22837 0.91446 0.99004 0.92971 1.67117 1.23871 1.24500 1.05456 0.92335 0.87801 0.88503 0.87528 0.89337 0.91352 0.87733 0.92754 0.92572 0.83539 0.82893 0.82385 0.82170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.74 11.25 21.65 0.24 -46.50 16 2 C 0.05 2.38 4.22 84.91 0.36 2.74 16 3 Si 0.98 40.68 29.61 68.60 2.03 42.71 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.39 -19.58 8.56 84.01 0.72 -18.86 16 8 H 0.11 5.03 6.75 -2.91 -0.02 5.01 16 9 N -0.39 -20.00 2.80 -464.37 -1.30 -21.30 16 10 C 0.47 21.48 7.20 87.66 0.63 22.11 16 11 O -0.59 -27.95 11.87 -3.00 -0.04 -27.99 16 12 C -0.10 -3.37 4.04 29.85 0.12 -3.25 16 13 C -0.10 -3.02 2.59 -9.44 -0.02 -3.04 16 14 H 0.08 2.62 7.97 -2.39 -0.02 2.60 16 15 C -0.14 -3.08 6.64 32.14 0.21 -2.87 16 16 C 0.04 0.99 7.77 72.65 0.56 1.55 16 17 O -0.41 -12.72 11.36 -148.98 -1.69 -14.41 16 18 C 0.07 2.18 6.48 72.45 0.47 2.65 16 19 C 0.36 18.62 6.14 132.90 0.82 19.44 16 20 C -0.24 -11.15 8.85 22.50 0.20 -10.96 16 21 C -0.07 -2.75 10.17 22.44 0.23 -2.52 16 22 C -0.22 -7.89 10.11 22.39 0.23 -7.67 16 23 C 0.10 4.04 11.18 84.66 0.95 4.99 16 24 N -0.49 -25.10 7.19 -192.95 -1.39 -26.48 16 25 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 27 H 0.10 3.26 7.06 -2.39 -0.02 3.25 16 28 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.09 1.81 8.04 -2.39 -0.02 1.79 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.91 7.76 -2.39 -0.02 1.89 16 33 H 0.06 2.06 7.85 -2.38 -0.02 2.04 16 34 H 0.15 7.17 5.22 -6.00 -0.03 7.14 16 35 H 0.15 4.63 8.06 -2.91 -0.02 4.61 16 36 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 37 H 0.16 5.59 8.06 -2.91 -0.02 5.57 16 Total: -1.00 -65.88 305.04 4.39 -61.49 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 1.06 Total: 28.18 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.47 Total: 4.30 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -2.44 Total: -94.28 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -1.73 Total: -42.40 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -65.88 4.39 -61.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331414023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.013 kcal (2) G-P(sol) polarization free energy of solvation -65.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds