Wall clock time and date at job start Mon Mar 30 2020 01:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99809 * 2 1 4 4 H 1.48499 * 109.47339 * 240.00262 * 3 2 1 5 5 H 1.48505 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47088 * 119.99905 * 3 2 1 7 7 C 1.37872 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00232 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46789 * 179.97438 * 9 7 2 11 11 C 1.38286 * 119.92630 * 90.00652 * 10 9 7 12 12 C 1.38118 * 120.06863 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92933 * 359.97438 * 12 11 10 14 14 N 1.39915 * 120.07121 * 180.02562 * 13 12 11 15 15 C 1.34775 * 120.00547 * 146.82721 * 14 13 12 16 16 O 1.21298 * 119.99437 * 354.71411 * 15 14 13 17 17 C 1.50699 * 120.00598 * 174.71106 * 15 14 13 18 18 O 1.42903 * 113.25645 * 337.95706 * 17 15 14 19 19 C 1.53514 * 114.17355 * 204.99728 * 17 15 14 20 20 N 1.47481 * 87.93142 * 220.33049 * 19 17 15 21 21 C 1.47473 * 87.83852 * 27.01329 * 20 19 17 22 22 C 1.38878 * 119.85858 * 0.27677 * 13 12 11 23 23 C 1.38116 * 119.92440 * 359.42622 * 22 13 12 24 24 H 0.96992 * 120.00451 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47109 * 59.99938 * 9 7 2 26 26 H 1.08997 * 109.47187 * 299.99781 * 9 7 2 27 27 H 1.07992 * 119.96607 * 359.96682 * 11 10 9 28 28 H 1.07995 * 120.03440 * 179.97438 * 12 11 10 29 29 H 0.97000 * 120.00124 * 326.82226 * 14 13 12 30 30 H 0.96696 * 113.99836 * 47.04014 * 18 17 15 31 31 H 1.08995 * 113.47442 * 105.56470 * 19 17 15 32 32 H 1.09001 * 113.47570 * 335.10331 * 19 17 15 33 33 H 1.00905 * 110.99169 * 138.70644 * 20 19 17 34 34 H 1.09001 * 113.48084 * 87.74913 * 21 20 19 35 35 H 1.08994 * 113.47755 * 218.22139 * 21 20 19 36 36 H 1.08000 * 120.03323 * 179.72851 * 22 13 12 37 37 H 1.08004 * 119.96029 * 180.30177 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2305 -3.6445 -0.0027 11 6 2.6788 -4.1700 1.1953 12 6 3.5760 -5.2200 1.1978 13 6 4.0276 -5.7484 -0.0045 14 7 4.9361 -6.8125 -0.0055 15 6 4.8878 -7.7391 -0.9830 16 8 3.9985 -7.7053 -1.8072 17 6 5.9386 -8.8171 -1.0521 18 8 7.1497 -8.4686 -0.3784 19 6 6.1463 -9.4034 -2.4556 20 7 6.2642 -10.7314 -1.8251 21 6 5.4174 -10.2246 -0.7293 22 6 3.5795 -5.2150 -1.2059 23 6 2.6775 -4.1690 -1.2015 24 1 -0.4850 0.8399 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6241 -2.5576 0.8880 27 1 2.3270 -3.7588 2.1299 28 1 3.9261 -5.6297 2.1337 29 1 5.6008 -6.8834 0.6974 30 1 7.0159 -8.0995 0.5054 31 1 7.0657 -9.0672 -2.9349 32 1 5.2734 -9.3049 -3.1009 33 1 5.7772 -11.4319 -2.3640 34 1 4.3499 -10.3451 -0.9139 35 1 5.7190 -10.5842 0.2544 36 1 3.9321 -5.6209 -2.1425 37 1 2.3249 -3.7569 -2.1355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341109485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:14 Heat of formation + Delta-G solvation = -18.117859 kcal Electronic energy + Delta-G solvation = -20520.311550 eV Core-core repulsion = 17263.793127 eV Total energy + Delta-G solvation = -3256.518423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42171 -39.48370 -37.90488 -36.19015 -34.82963 -33.04082 -30.63543 -30.39764 -28.21043 -26.57862 -26.39856 -23.69675 -22.54845 -21.93652 -20.37701 -20.06381 -19.09879 -17.31095 -17.14012 -16.33900 -15.86820 -15.56045 -15.31362 -14.96513 -14.30736 -14.27779 -13.80871 -13.64145 -13.20718 -13.14599 -12.98395 -12.70319 -12.63770 -12.10933 -11.89802 -11.47957 -11.32976 -10.88826 -10.72847 -10.62047 -10.42190 -10.13257 -9.86935 -9.54566 -9.45705 -9.34098 -8.44833 -8.38018 -7.49952 -6.06144 -4.10626 1.63057 1.96628 2.38158 2.72786 3.30472 3.30788 3.34783 3.37786 3.76604 3.83788 4.28605 4.35599 4.50961 4.69884 4.83297 5.08222 5.26541 5.27922 5.32599 5.34134 5.45949 5.53133 5.78278 5.92689 6.00163 6.11407 6.55021 6.56347 6.68774 6.76242 6.90126 7.08451 7.13206 7.32363 7.46240 7.60868 7.80973 7.88309 7.89213 8.28954 8.94405 9.53332 11.03490 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.042403 B = 0.003197 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.179881 B = 8756.148001 C = 8810.769128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.038 4.038 11 C -0.108 4.108 12 C -0.140 4.140 13 C 0.099 3.901 14 N -0.661 5.661 15 C 0.498 3.502 16 O -0.509 6.509 17 C 0.082 3.918 18 O -0.514 6.514 19 C 0.031 3.969 20 N -0.615 5.615 21 C -0.007 4.007 22 C -0.115 4.115 23 C -0.108 4.108 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.124 0.876 28 H 0.115 0.885 29 H 0.402 0.598 30 H 0.378 0.622 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.327 0.673 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.108 -18.594 0.588 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.039 4.039 11 C -0.126 4.126 12 C -0.161 4.161 13 C 0.007 3.993 14 N -0.306 5.306 15 C 0.283 3.717 16 O -0.384 6.384 17 C 0.036 3.964 18 O -0.319 6.319 19 C -0.099 4.099 20 N -0.239 5.239 21 C -0.139 4.139 22 C -0.135 4.135 23 C -0.126 4.126 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.142 0.858 28 H 0.133 0.867 29 H 0.238 0.762 30 H 0.227 0.773 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.141 0.859 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.442 -18.814 -0.287 22.022 hybrid contribution -0.374 1.244 0.613 1.437 sum 11.068 -17.569 0.326 20.768 Atomic orbital electron populations 1.69943 1.06043 1.26986 1.50313 1.25012 0.94887 0.99267 0.95141 0.86590 0.79529 0.82782 0.78737 1.20144 1.21223 1.20165 1.21019 0.93012 0.89854 1.51263 0.92495 1.18361 0.92552 0.89542 0.98476 1.20752 0.96216 0.95089 0.91818 1.20908 0.97334 0.95754 0.98650 1.20745 1.00214 0.99672 0.95428 1.17497 0.96331 0.90869 0.94597 1.43338 1.34417 1.24559 1.28301 1.20983 0.86524 0.82415 0.81763 1.90764 1.35055 1.73309 1.39229 1.22552 0.84419 0.91648 0.97746 1.86669 1.27299 1.84540 1.33362 1.23672 1.04050 0.89107 0.93118 1.67394 1.43392 1.04968 1.08170 1.24199 0.97828 0.92543 0.99294 1.20968 0.99295 0.96633 0.96574 1.21012 0.97375 0.95588 0.98653 0.92743 0.95247 0.95245 0.85841 0.86697 0.76234 0.77348 0.88115 0.88464 0.86066 0.89845 0.88343 0.85942 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -14.21 9.09 -34.44 -0.31 -14.53 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 10 C -0.04 -0.82 5.07 -104.59 -0.53 -1.35 16 11 C -0.11 -2.01 9.69 -39.61 -0.38 -2.39 16 12 C -0.14 -2.18 9.96 -39.39 -0.39 -2.57 16 13 C 0.10 1.55 6.28 -83.69 -0.53 1.02 16 14 N -0.66 -7.62 5.27 -9.86 -0.05 -7.67 16 15 C 0.50 6.08 6.94 -10.99 -0.08 6.01 16 16 O -0.51 -8.02 13.80 5.54 0.08 -7.94 16 17 C 0.08 0.78 1.97 -91.24 -0.18 0.60 16 18 O -0.51 -4.51 13.47 -35.23 -0.47 -4.98 16 19 C 0.03 0.29 7.95 -7.54 -0.06 0.23 16 20 N -0.61 -5.30 8.71 -122.65 -1.07 -6.36 16 21 C -0.01 -0.06 8.04 -7.54 -0.06 -0.12 16 22 C -0.11 -2.06 8.66 -39.39 -0.34 -2.40 16 23 C -0.11 -2.15 9.69 -39.61 -0.38 -2.53 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 26 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 27 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 29 H 0.40 3.02 7.12 -40.82 -0.29 2.73 16 30 H 0.38 1.73 7.37 45.56 0.34 2.06 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 0.91 7.41 -51.93 -0.38 0.52 16 33 H 0.33 2.18 8.91 -39.29 -0.35 1.83 16 34 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.12 2.17 6.43 -52.49 -0.34 1.83 16 37 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -33.25 317.32 -8.46 -41.71 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.94 Total: 5.06 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.49 Total: -15.43 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: -0.38 Total: -39.54 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.40 Total: -12.92 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.25 -8.46 -41.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341109485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.591 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds