Wall clock time and date at job start Mon Mar 30 2020 01:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99809 * 2 1 4 4 H 1.48499 * 109.47339 * 240.00262 * 3 2 1 5 5 H 1.48505 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47088 * 119.99905 * 3 2 1 7 7 C 1.37872 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00232 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46789 * 179.97438 * 9 7 2 11 11 C 1.38286 * 119.92630 * 90.00652 * 10 9 7 12 12 C 1.38118 * 120.06863 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92933 * 359.97438 * 12 11 10 14 14 N 1.39915 * 120.07121 * 180.02562 * 13 12 11 15 15 C 1.34775 * 120.00547 * 146.82721 * 14 13 12 16 16 O 1.21298 * 119.99437 * 354.71411 * 15 14 13 17 17 C 1.50699 * 120.00598 * 174.71106 * 15 14 13 18 18 O 1.42903 * 113.25645 * 337.95706 * 17 15 14 19 19 C 1.53514 * 114.17355 * 204.99728 * 17 15 14 20 20 N 1.47481 * 87.93142 * 220.33049 * 19 17 15 21 21 C 1.47473 * 87.83852 * 27.01329 * 20 19 17 22 22 C 1.38878 * 119.85858 * 0.27677 * 13 12 11 23 23 C 1.38116 * 119.92440 * 359.42622 * 22 13 12 24 24 H 0.96992 * 120.00451 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47109 * 59.99938 * 9 7 2 26 26 H 1.08997 * 109.47187 * 299.99781 * 9 7 2 27 27 H 1.07992 * 119.96607 * 359.96682 * 11 10 9 28 28 H 1.07995 * 120.03440 * 179.97438 * 12 11 10 29 29 H 0.97000 * 120.00124 * 326.82226 * 14 13 12 30 30 H 0.96696 * 113.99836 * 47.04014 * 18 17 15 31 31 H 1.08995 * 113.47442 * 105.56470 * 19 17 15 32 32 H 1.09001 * 113.47570 * 335.10331 * 19 17 15 33 33 H 1.00905 * 110.99169 * 138.70644 * 20 19 17 34 34 H 1.09001 * 113.48084 * 87.74913 * 21 20 19 35 35 H 1.08994 * 113.47755 * 218.22139 * 21 20 19 36 36 H 1.08000 * 120.03323 * 179.72851 * 22 13 12 37 37 H 1.08004 * 119.96029 * 180.30177 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2305 -3.6445 -0.0027 11 6 2.6788 -4.1700 1.1953 12 6 3.5760 -5.2200 1.1978 13 6 4.0276 -5.7484 -0.0045 14 7 4.9361 -6.8125 -0.0055 15 6 4.8878 -7.7391 -0.9830 16 8 3.9985 -7.7053 -1.8072 17 6 5.9386 -8.8171 -1.0521 18 8 7.1497 -8.4686 -0.3784 19 6 6.1463 -9.4034 -2.4556 20 7 6.2642 -10.7314 -1.8251 21 6 5.4174 -10.2246 -0.7293 22 6 3.5795 -5.2150 -1.2059 23 6 2.6775 -4.1690 -1.2015 24 1 -0.4850 0.8399 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6241 -2.5576 0.8880 27 1 2.3270 -3.7588 2.1299 28 1 3.9261 -5.6297 2.1337 29 1 5.6008 -6.8834 0.6974 30 1 7.0159 -8.0995 0.5054 31 1 7.0657 -9.0672 -2.9349 32 1 5.2734 -9.3049 -3.1009 33 1 5.7772 -11.4319 -2.3640 34 1 4.3499 -10.3451 -0.9139 35 1 5.7190 -10.5842 0.2544 36 1 3.9321 -5.6209 -2.1425 37 1 2.3249 -3.7569 -2.1355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341109485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:13 Heat of formation + Delta-G solvation = -45.481980 kcal Electronic energy + Delta-G solvation = -20521.498148 eV Core-core repulsion = 17263.793127 eV Total energy + Delta-G solvation = -3257.705021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.31154 -40.58725 -39.10840 -37.00962 -36.05365 -34.93488 -32.29300 -31.82325 -29.29332 -28.04910 -27.09512 -25.34832 -23.97387 -23.18921 -21.73440 -20.88927 -20.06581 -18.53865 -18.42835 -17.82610 -16.95790 -16.71976 -16.57704 -16.04519 -15.91676 -15.46905 -14.89768 -14.62705 -14.53160 -14.30880 -14.27006 -13.89821 -13.66811 -13.53462 -13.29731 -13.20545 -12.66090 -12.59598 -12.46254 -12.06177 -11.72837 -11.56033 -11.40097 -11.11867 -10.70303 -10.60107 -10.17102 -9.80510 -8.94630 -8.19040 -6.33712 0.32877 0.53116 1.28984 1.40491 1.42919 1.51224 1.75896 2.39846 2.66509 2.93562 3.05016 3.10687 3.12747 3.54305 4.00580 4.05161 4.10017 4.18129 4.35293 4.48002 4.55498 4.57956 4.62029 4.65018 4.71583 4.86974 5.08148 5.27508 5.30433 5.37836 5.40637 5.55937 5.74544 6.03712 6.06812 6.08726 6.17400 6.22307 6.57060 6.78985 6.90921 7.34976 8.89134 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.042403 B = 0.003197 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.179881 B = 8756.148001 C = 8810.769128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.071 4.071 11 C -0.113 4.113 12 C -0.123 4.123 13 C 0.115 3.885 14 N -0.647 5.647 15 C 0.500 3.500 16 O -0.546 6.546 17 C 0.091 3.909 18 O -0.520 6.520 19 C 0.026 3.974 20 N -0.620 5.620 21 C 0.000 4.000 22 C -0.123 4.123 23 C -0.121 4.121 24 H 0.266 0.734 25 H -0.001 1.001 26 H 0.008 0.992 27 H 0.128 0.872 28 H 0.163 0.837 29 H 0.425 0.575 30 H 0.397 0.603 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.338 0.662 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.663 -19.908 1.991 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.072 4.072 11 C -0.132 4.132 12 C -0.143 4.143 13 C 0.022 3.978 14 N -0.295 5.295 15 C 0.287 3.713 16 O -0.423 6.423 17 C 0.045 3.955 18 O -0.328 6.328 19 C -0.104 4.104 20 N -0.246 5.246 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.140 4.140 24 H 0.074 0.926 25 H 0.017 0.983 26 H 0.026 0.974 27 H 0.146 0.854 28 H 0.181 0.819 29 H 0.265 0.735 30 H 0.248 0.752 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.152 0.848 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.036 -20.153 1.151 24.587 hybrid contribution -1.124 1.519 0.172 1.897 sum 12.913 -18.635 1.322 22.710 Atomic orbital electron populations 1.70074 1.07717 1.28043 1.51257 1.25941 0.95764 1.03161 0.94573 0.85487 0.78280 0.78020 0.79204 1.19478 1.20654 1.18935 1.21364 0.93148 0.91171 1.51032 0.92564 1.18094 0.92891 0.91185 0.95858 1.20423 0.97511 0.95482 0.93776 1.21011 0.97974 0.96633 0.97558 1.21065 0.98182 0.97811 0.97235 1.17563 0.95614 0.90827 0.93781 1.43237 1.34066 1.23125 1.29061 1.21552 0.86439 0.82556 0.80793 1.90761 1.36701 1.74262 1.40539 1.22412 0.83876 0.91024 0.98157 1.86661 1.26645 1.84732 1.34789 1.23685 1.03776 0.89781 0.93196 1.67382 1.43911 1.04813 1.08459 1.24213 0.97812 0.91159 0.99966 1.20982 0.99206 0.96233 0.97854 1.20919 0.98518 0.96730 0.97784 0.92558 0.98304 0.97409 0.85413 0.81914 0.73462 0.75162 0.88381 0.88888 0.84839 0.89788 0.86638 0.85938 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 2 C 0.00 0.21 5.46 84.65 0.46 0.68 16 3 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.53 -30.24 9.09 25.60 0.23 -30.01 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.06 3.05 5.10 29.10 0.15 3.20 16 10 C -0.07 -3.16 5.07 -19.84 -0.10 -3.26 16 11 C -0.11 -4.13 9.69 22.25 0.22 -3.91 16 12 C -0.12 -3.42 9.96 22.39 0.22 -3.20 16 13 C 0.12 3.32 6.28 38.16 0.24 3.56 16 14 N -0.65 -12.70 5.27 -303.50 -1.60 -14.29 16 15 C 0.50 10.99 6.94 87.66 0.61 11.60 16 16 O -0.55 -16.54 13.80 -3.09 -0.04 -16.58 16 17 C 0.09 1.48 1.97 -11.19 -0.02 1.46 16 18 O -0.52 -7.27 13.47 -148.98 -2.01 -9.27 16 19 C 0.03 0.45 7.95 83.58 0.66 1.11 16 20 N -0.62 -9.20 8.71 -542.32 -4.73 -13.93 16 21 C 0.00 -0.01 8.04 83.58 0.67 0.67 16 22 C -0.12 -4.36 8.66 22.39 0.19 -4.16 16 23 C -0.12 -5.00 9.69 22.25 0.22 -4.78 16 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.00 -0.08 8.08 -2.39 -0.02 -0.10 16 26 H 0.01 0.43 8.08 -2.39 -0.02 0.41 16 27 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 28 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 29 H 0.43 4.39 7.12 -92.71 -0.66 3.73 16 30 H 0.40 1.88 7.37 -74.06 -0.55 1.33 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.65 7.41 -2.39 -0.02 1.63 16 33 H 0.34 3.81 8.91 -89.69 -0.80 3.01 16 34 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.12 4.33 6.43 -2.91 -0.02 4.32 16 37 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -73.96 317.32 -3.19 -77.15 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -0.88 Total: 13.83 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 3.75 Total: -27.05 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -6.04 Total: -84.25 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -2.05 Total: -25.86 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -73.96 -3.19 -77.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341109485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.669 kcal (2) G-P(sol) polarization free energy of solvation -73.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds