Wall clock time and date at job start Mon Mar 30 2020 02:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86793 * 120.00243 * 2 1 4 4 H 1.48502 * 109.47387 * 270.00526 * 3 2 1 5 5 H 1.48503 * 109.47233 * 30.00428 * 3 2 1 6 6 H 1.48507 * 109.47339 * 150.00066 * 3 2 1 7 7 C 1.37877 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00018 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00159 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47330 * 299.99983 * 9 7 2 11 11 O 1.45201 * 109.47418 * 179.97438 * 9 7 2 12 12 C 1.34229 * 117.00517 * 149.99921 * 11 9 7 13 13 O 1.20828 * 119.99602 * 0.02562 * 12 11 9 14 14 C 1.50694 * 120.00533 * 180.02562 * 12 11 9 15 15 C 1.52995 * 109.47301 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47299 * 179.97438 * 15 14 12 17 17 C 1.38602 * 120.79596 * 90.00262 * 16 15 14 18 18 N 1.32331 * 119.10423 * 179.97438 * 17 16 15 19 19 C 1.31794 * 120.81888 * 359.97438 * 18 17 16 20 20 N 1.31795 * 121.75372 * 0.02562 * 19 18 17 21 21 C 1.32334 * 120.81807 * 0.02562 * 20 19 18 22 22 C 1.53003 * 109.47120 * 60.00142 * 9 7 2 23 23 C 1.53008 * 117.49690 * 248.74718 * 22 9 7 24 24 C 1.52997 * 117.50052 * 180.08985 * 22 9 7 25 25 H 0.97002 * 120.00026 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47033 * 59.99945 * 14 12 11 27 27 H 1.09005 * 109.47292 * 300.00243 * 14 12 11 28 28 H 1.08998 * 109.46952 * 60.00104 * 15 14 12 29 29 H 1.08997 * 109.47566 * 300.00466 * 15 14 12 30 30 H 1.07994 * 120.45169 * 359.95292 * 17 16 15 31 31 H 1.08003 * 119.12654 * 179.71869 * 19 18 17 32 32 H 1.07998 * 120.44737 * 179.97438 * 21 20 19 33 33 H 1.09001 * 115.55064 * 34.41490 * 22 9 7 34 34 H 1.08998 * 117.49414 * 359.97438 * 23 22 9 35 35 H 1.09002 * 117.49465 * 145.01835 * 23 22 9 36 36 H 1.09001 * 117.50165 * 214.98075 * 24 22 9 37 37 H 1.09004 * 117.49676 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 2.1944 -3.6028 -0.0018 12 6 1.8037 -4.7394 0.5960 13 8 0.7092 -4.8098 1.1031 14 6 2.7299 -5.9275 0.6347 15 6 2.0467 -7.0830 1.3688 16 6 2.9727 -8.2713 1.4069 17 6 3.8623 -8.4444 2.4556 18 7 4.6598 -9.5004 2.4555 19 6 4.6147 -10.3805 1.4756 20 7 3.7819 -10.2486 0.4626 21 6 2.9552 -9.2175 0.3944 22 6 0.3708 -2.5799 -1.2495 23 6 -1.1448 -2.5124 -1.0512 24 6 -0.4809 -3.8375 -1.4335 25 1 -0.4850 0.8401 0.0004 26 1 3.6467 -5.6565 1.1581 27 1 2.9698 -6.2345 -0.3833 28 1 1.1297 -7.3541 0.8457 29 1 1.8071 -6.7758 2.3867 30 1 3.9044 -7.7269 3.2617 31 1 5.2812 -11.2300 1.5008 32 1 2.2756 -9.1151 -0.4386 33 1 0.7824 -2.1153 -2.1455 34 1 -1.5149 -2.4108 -0.0310 35 1 -1.7303 -2.0036 -1.8171 36 1 -0.6299 -4.2002 -2.4505 37 1 -0.4139 -4.6076 -0.6649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344936023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:48 Heat of formation + Delta-G solvation = -24.032575 kcal Electronic energy + Delta-G solvation = -20648.104872 eV Core-core repulsion = 17391.329967 eV Total energy + Delta-G solvation = -3256.774905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24274 -39.73056 -36.66758 -35.09216 -34.69321 -33.90886 -32.67917 -30.61982 -27.94940 -25.76950 -24.80935 -23.35613 -22.33299 -21.28877 -20.25345 -19.19751 -17.85608 -17.81995 -17.25768 -16.56159 -15.83519 -15.53376 -14.91634 -14.62400 -14.19374 -14.00651 -13.88067 -13.82200 -13.66200 -12.86954 -12.53853 -12.32565 -11.54311 -11.39868 -11.24086 -11.11640 -11.03225 -11.00901 -10.94960 -10.45019 -10.30523 -9.88068 -9.82306 -9.54568 -9.43871 -9.38658 -9.05640 -8.68718 -8.45734 -6.18145 -4.26243 0.63913 0.83940 2.91486 3.23167 3.28935 3.31372 3.45553 3.64042 3.93385 3.99760 4.30932 4.37824 4.60851 4.62106 4.91545 5.01564 5.13277 5.15978 5.21197 5.48393 5.53032 5.77954 5.90670 5.93170 5.96528 6.13012 6.17103 6.35674 6.51316 6.65334 6.71106 6.97216 7.12351 7.23993 7.37331 7.59732 7.82650 7.83027 8.08297 8.58591 8.85676 9.38652 10.88520 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029017 B = 0.003640 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.733889 B = 7691.001962 C = 8306.109938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.249 3.751 10 H 0.049 0.951 11 O -0.352 6.352 12 C 0.454 3.546 13 O -0.520 6.520 14 C -0.112 4.112 15 C -0.061 4.061 16 C -0.181 4.181 17 C 0.151 3.849 18 N -0.519 5.519 19 C 0.283 3.717 20 N -0.519 5.519 21 C 0.151 3.849 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.230 4.230 25 H 0.264 0.736 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.170 0.830 31 H 0.194 0.806 32 H 0.169 0.831 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 -14.847 1.257 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.197 3.803 10 H 0.066 0.934 11 O -0.268 6.268 12 C 0.297 3.703 13 O -0.411 6.411 14 C -0.150 4.150 15 C -0.100 4.100 16 C -0.185 4.185 17 C -0.015 4.015 18 N -0.232 5.232 19 C -0.005 4.005 20 N -0.232 5.232 21 C -0.015 4.015 22 C -0.134 4.134 23 C -0.160 4.160 24 C -0.267 4.267 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.187 0.813 31 H 0.211 0.789 32 H 0.186 0.814 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.895 -15.479 1.418 16.297 hybrid contribution -0.310 1.741 -0.162 1.776 sum 4.586 -13.738 1.257 14.538 Atomic orbital electron populations 1.70041 1.05755 1.27030 1.48027 1.24879 0.95035 0.99092 0.94533 0.86359 0.79695 0.82299 0.78263 1.20446 1.21038 1.19680 1.20912 0.93813 0.88434 1.53550 0.91331 1.20214 0.86092 0.80446 0.93588 0.93368 1.86486 1.49309 1.22112 1.68900 1.23207 0.86542 0.85192 0.75376 1.90585 1.22794 1.83579 1.44107 1.21303 0.98822 0.91283 1.03585 1.20287 0.96538 0.89911 1.03248 1.21738 1.00070 0.99338 0.97314 1.23254 0.88410 0.93533 0.96304 1.68442 1.23482 1.03704 1.27606 1.24963 0.93866 0.96687 0.84990 1.68442 1.06093 1.22892 1.25821 1.23242 0.93871 0.87883 0.96524 1.22603 0.92929 0.97392 1.00485 1.22361 0.95560 0.96714 1.01398 1.23284 1.09526 0.93033 1.00810 0.92608 0.88146 0.88167 0.89226 0.89183 0.81336 0.78921 0.81366 0.89376 0.89338 0.90802 0.91070 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.79 11.43 55.43 0.63 -23.16 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 3 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -14.38 8.88 -34.44 -0.31 -14.69 16 8 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 9 C 0.25 6.34 2.25 -27.88 -0.06 6.28 16 10 H 0.05 1.36 6.92 -51.93 -0.36 1.00 16 11 O -0.35 -7.87 9.84 -39.26 -0.39 -8.26 16 12 C 0.45 8.41 7.18 36.00 0.26 8.67 16 13 O -0.52 -10.80 13.03 -18.75 -0.24 -11.05 16 14 C -0.11 -1.38 5.79 -27.89 -0.16 -1.55 16 15 C -0.06 -0.64 4.68 -27.89 -0.13 -0.77 16 16 C -0.18 -1.73 5.17 -104.36 -0.54 -2.27 16 17 C 0.15 1.46 11.01 -17.20 -0.19 1.27 16 18 N -0.52 -5.56 10.44 -14.58 -0.15 -5.71 16 19 C 0.28 2.77 12.29 -92.15 -1.13 1.64 16 20 N -0.52 -5.53 10.44 -14.58 -0.15 -5.69 16 21 C 0.15 1.45 11.01 -17.21 -0.19 1.26 16 22 C -0.12 -2.75 4.47 -90.62 -0.41 -3.15 16 23 C -0.12 -2.77 9.04 -26.69 -0.24 -3.01 16 24 C -0.23 -4.76 9.80 -26.70 -0.26 -5.02 16 25 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.09 0.94 8.06 -51.93 -0.42 0.52 16 29 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 30 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.19 1.28 8.06 -52.48 -0.42 0.85 16 32 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.09 2.18 8.11 -51.93 -0.42 1.76 16 34 H 0.09 2.13 8.05 -51.93 -0.42 1.71 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.09 1.97 5.37 -51.93 -0.28 1.70 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -30.73 320.34 -8.77 -39.50 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.82 Total: 3.54 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -3.46 Total: -9.60 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.33 Total: -34.56 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.63 Total: -19.30 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.73 -8.77 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344936023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.471 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds