Wall clock time and date at job start Mon Mar 30 2020 02:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86793 * 120.00243 * 2 1 4 4 H 1.48502 * 109.47387 * 270.00526 * 3 2 1 5 5 H 1.48503 * 109.47233 * 30.00428 * 3 2 1 6 6 H 1.48507 * 109.47339 * 150.00066 * 3 2 1 7 7 C 1.37877 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00018 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00159 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47330 * 299.99983 * 9 7 2 11 11 O 1.45201 * 109.47418 * 179.97438 * 9 7 2 12 12 C 1.34229 * 117.00517 * 149.99921 * 11 9 7 13 13 O 1.20828 * 119.99602 * 0.02562 * 12 11 9 14 14 C 1.50694 * 120.00533 * 180.02562 * 12 11 9 15 15 C 1.52995 * 109.47301 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47299 * 179.97438 * 15 14 12 17 17 C 1.38602 * 120.79596 * 90.00262 * 16 15 14 18 18 N 1.32331 * 119.10423 * 179.97438 * 17 16 15 19 19 C 1.31794 * 120.81888 * 359.97438 * 18 17 16 20 20 N 1.31795 * 121.75372 * 0.02562 * 19 18 17 21 21 C 1.32334 * 120.81807 * 0.02562 * 20 19 18 22 22 C 1.53003 * 109.47120 * 60.00142 * 9 7 2 23 23 C 1.53008 * 117.49690 * 248.74718 * 22 9 7 24 24 C 1.52997 * 117.50052 * 180.08985 * 22 9 7 25 25 H 0.97002 * 120.00026 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47033 * 59.99945 * 14 12 11 27 27 H 1.09005 * 109.47292 * 300.00243 * 14 12 11 28 28 H 1.08998 * 109.46952 * 60.00104 * 15 14 12 29 29 H 1.08997 * 109.47566 * 300.00466 * 15 14 12 30 30 H 1.07994 * 120.45169 * 359.95292 * 17 16 15 31 31 H 1.08003 * 119.12654 * 179.71869 * 19 18 17 32 32 H 1.07998 * 120.44737 * 179.97438 * 21 20 19 33 33 H 1.09001 * 115.55064 * 34.41490 * 22 9 7 34 34 H 1.08998 * 117.49414 * 359.97438 * 23 22 9 35 35 H 1.09002 * 117.49465 * 145.01835 * 23 22 9 36 36 H 1.09001 * 117.50165 * 214.98075 * 24 22 9 37 37 H 1.09004 * 117.49676 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 2.1944 -3.6028 -0.0018 12 6 1.8037 -4.7394 0.5960 13 8 0.7092 -4.8098 1.1031 14 6 2.7299 -5.9275 0.6347 15 6 2.0467 -7.0830 1.3688 16 6 2.9727 -8.2713 1.4069 17 6 3.8623 -8.4444 2.4556 18 7 4.6598 -9.5004 2.4555 19 6 4.6147 -10.3805 1.4756 20 7 3.7819 -10.2486 0.4626 21 6 2.9552 -9.2175 0.3944 22 6 0.3708 -2.5799 -1.2495 23 6 -1.1448 -2.5124 -1.0512 24 6 -0.4809 -3.8375 -1.4335 25 1 -0.4850 0.8401 0.0004 26 1 3.6467 -5.6565 1.1581 27 1 2.9698 -6.2345 -0.3833 28 1 1.1297 -7.3541 0.8457 29 1 1.8071 -6.7758 2.3867 30 1 3.9044 -7.7269 3.2617 31 1 5.2812 -11.2300 1.5008 32 1 2.2756 -9.1151 -0.4386 33 1 0.7824 -2.1153 -2.1455 34 1 -1.5149 -2.4108 -0.0310 35 1 -1.7303 -2.0036 -1.8171 36 1 -0.6299 -4.2002 -2.4505 37 1 -0.4139 -4.6076 -0.6649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344936023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:47 Heat of formation + Delta-G solvation = -40.203630 kcal Electronic energy + Delta-G solvation = -20648.806101 eV Core-core repulsion = 17391.329967 eV Total energy + Delta-G solvation = -3257.476134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.00302 -41.30961 -38.35201 -36.71145 -35.76393 -34.69798 -34.65035 -31.60017 -29.81475 -26.82451 -25.53735 -25.17002 -23.38254 -23.04610 -21.73872 -20.94580 -18.96867 -18.58507 -18.53540 -18.32026 -17.34999 -17.09774 -16.46249 -15.78346 -15.61467 -15.26607 -15.06488 -14.55186 -14.47429 -14.40383 -14.12056 -13.65541 -13.20129 -13.09867 -12.93663 -12.79015 -12.30251 -12.17097 -12.11402 -11.84098 -11.79929 -11.75138 -11.40666 -11.17531 -10.92565 -10.57703 -10.42838 -10.34906 -10.18291 -8.20970 -6.37505 -0.09700 0.10934 1.42171 1.43632 1.44574 1.54594 2.06289 2.44299 2.81714 3.06702 3.23274 3.29850 3.30748 3.67596 3.73328 3.83296 3.93938 4.12257 4.24713 4.29918 4.34037 4.46832 4.51283 4.62473 4.78468 4.81371 4.83106 5.09436 5.11576 5.14130 5.28938 5.42197 5.46017 5.51496 5.59360 5.89519 5.98568 6.20923 6.66420 7.06517 7.10520 7.33056 8.85002 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029017 B = 0.003640 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.733889 B = 7691.001962 C = 8306.109938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.557 4.557 8 H 0.063 0.937 9 C 0.255 3.745 10 H 0.009 0.991 11 O -0.366 6.366 12 C 0.447 3.553 13 O -0.545 6.545 14 C -0.099 4.099 15 C -0.050 4.050 16 C -0.179 4.179 17 C 0.146 3.854 18 N -0.538 5.538 19 C 0.279 3.721 20 N -0.537 5.537 21 C 0.148 3.852 22 C -0.134 4.134 23 C -0.125 4.125 24 C -0.196 4.196 25 H 0.266 0.734 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.186 0.814 31 H 0.219 0.781 32 H 0.188 0.812 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.580 -15.660 0.636 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.177 4.177 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.594 4.594 8 H 0.081 0.919 9 C 0.202 3.798 10 H 0.027 0.973 11 O -0.282 6.282 12 C 0.292 3.708 13 O -0.437 6.437 14 C -0.137 4.137 15 C -0.088 4.088 16 C -0.183 4.183 17 C -0.019 4.019 18 N -0.251 5.251 19 C -0.008 4.008 20 N -0.251 5.251 21 C -0.017 4.017 22 C -0.153 4.153 23 C -0.163 4.163 24 C -0.233 4.233 25 H 0.076 0.924 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.203 0.797 31 H 0.235 0.765 32 H 0.205 0.795 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.711 -16.318 0.801 17.307 hybrid contribution -0.565 1.913 0.080 1.997 sum 5.145 -14.405 0.881 15.321 Atomic orbital electron populations 1.70152 1.06951 1.27882 1.48045 1.25689 0.95926 1.02235 0.93823 0.85349 0.78464 0.78037 0.78526 1.19653 1.20516 1.19267 1.21207 0.93779 0.89934 1.54522 0.91924 1.19794 0.86113 0.81297 0.92623 0.97303 1.86475 1.48860 1.22861 1.70004 1.24406 0.87215 0.85266 0.73912 1.90570 1.24367 1.83831 1.44922 1.21425 0.97897 0.88822 1.05513 1.20147 0.96538 0.89399 1.02746 1.21545 1.00089 0.99077 0.97608 1.23596 0.87984 0.93594 0.96734 1.68511 1.24154 1.04303 1.28174 1.25511 0.93771 0.97084 0.84457 1.68517 1.06759 1.23431 1.26348 1.23613 0.93711 0.87455 0.96953 1.22406 0.93294 1.00191 0.99378 1.22276 0.94859 0.98583 1.00538 1.23287 1.06000 0.91649 1.02353 0.92448 0.86398 0.85984 0.89194 0.89544 0.79733 0.76508 0.79476 0.90502 0.91687 0.89551 0.87894 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.53 11.43 21.45 0.25 -49.29 16 2 C 0.03 1.37 5.30 84.66 0.45 1.82 16 3 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.56 -30.92 8.88 25.60 0.23 -30.70 16 8 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 9 C 0.25 13.35 2.25 29.85 0.07 13.41 16 10 H 0.01 0.54 6.92 -2.39 -0.02 0.53 16 11 O -0.37 -16.50 9.84 -51.41 -0.51 -17.00 16 12 C 0.45 16.39 7.18 71.23 0.51 16.90 16 13 O -0.55 -22.83 13.03 21.96 0.29 -22.54 16 14 C -0.10 -2.26 5.79 29.84 0.17 -2.08 16 15 C -0.05 -0.94 4.68 29.85 0.14 -0.80 16 16 C -0.18 -3.05 5.17 -19.69 -0.10 -3.16 16 17 C 0.15 2.57 11.01 84.70 0.93 3.50 16 18 N -0.54 -10.60 10.44 -200.05 -2.09 -12.69 16 19 C 0.28 4.95 12.29 180.88 2.22 7.18 16 20 N -0.54 -10.41 10.44 -200.05 -2.09 -12.50 16 21 C 0.15 2.53 11.01 84.70 0.93 3.46 16 22 C -0.13 -6.45 4.47 -10.79 -0.05 -6.50 16 23 C -0.13 -5.68 9.04 30.62 0.28 -5.40 16 24 C -0.20 -7.92 9.80 30.62 0.30 -7.62 16 25 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 26 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.09 1.72 8.06 -2.39 -0.02 1.71 16 29 H 0.09 1.72 8.06 -2.39 -0.02 1.70 16 30 H 0.19 2.46 8.06 -2.91 -0.02 2.43 16 31 H 0.22 2.44 8.06 -2.91 -0.02 2.41 16 32 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.08 3.84 8.11 -2.39 -0.02 3.82 16 34 H 0.06 3.23 8.05 -2.39 -0.02 3.21 16 35 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 36 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 37 H 0.09 3.75 5.37 -2.38 -0.01 3.74 16 Total: -1.00 -67.11 320.34 5.03 -62.08 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.07 Total: 17.57 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 6.08 Total: -9.98 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -3.93 Total: -74.47 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.22 Total: -39.54 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -67.11 5.03 -62.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344936023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.880 kcal (2) G-P(sol) polarization free energy of solvation -67.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds