Wall clock time and date at job start Mon Mar 30 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35638 * 116.99244 * 2 1 4 4 C 1.38702 * 120.15986 * 0.02562 * 3 2 1 5 5 C 1.38060 * 120.08999 * 180.02562 * 4 3 2 6 6 C 1.38557 * 120.40270 * 359.95400 * 5 4 3 7 7 C 1.37765 * 120.31024 * 359.97438 * 6 5 4 8 8 C 1.39768 * 119.90177 * 0.02655 * 7 6 5 9 9 C 1.47397 * 120.19768 * 179.97438 * 8 7 6 10 10 O 1.21508 * 119.99935 * 179.97438 * 9 8 7 11 11 O 1.34749 * 120.00301 * 359.97438 * 9 8 7 12 12 C 1.45201 * 117.00645 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46747 * 29.99610 * 12 11 9 14 14 C 1.50701 * 109.47352 * 149.99905 * 12 11 9 15 15 H 1.07995 * 119.99672 * 0.02562 * 14 12 11 16 16 C 1.37872 * 119.99566 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00432 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99854 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47387 * 89.99323 * 18 16 14 20 20 H 1.48502 * 109.47136 * 209.99960 * 18 16 14 21 21 H 1.48502 * 109.46972 * 329.99605 * 18 16 14 22 22 C 1.53001 * 109.46917 * 270.00174 * 12 11 9 23 23 C 1.53000 * 117.49959 * 128.74259 * 22 12 11 24 24 C 1.53007 * 117.49961 * 60.08622 * 22 12 11 25 25 H 1.08996 * 109.47290 * 299.99827 * 1 2 3 26 26 H 1.08993 * 109.47176 * 60.00300 * 1 2 3 27 27 H 1.09004 * 109.46854 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.96005 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.79445 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.84975 * 180.02562 * 6 5 4 31 31 H 1.08004 * 120.05205 * 179.74518 * 7 6 5 32 32 H 0.96998 * 120.00092 * 180.02562 * 17 16 14 33 33 H 1.08993 * 115.55088 * 274.41143 * 22 12 11 34 34 H 1.09002 * 117.49798 * 359.97438 * 23 22 12 35 35 H 1.08998 * 117.49899 * 145.01999 * 23 22 12 36 36 H 1.08998 * 117.49292 * 214.98153 * 24 22 12 37 37 H 1.09007 * 117.49631 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2924 2.3739 0.0005 5 6 1.9205 3.6033 0.0000 6 6 3.3037 3.6840 -0.0001 7 6 4.0671 2.5372 0.0008 8 6 3.4446 1.2858 0.0014 9 6 4.2550 0.0547 0.0018 10 8 3.7101 -1.0314 0.0027 11 8 5.6002 0.1334 0.0012 12 6 6.3341 -1.1195 0.0011 13 1 5.7494 -1.8829 -0.5123 14 6 7.6494 -0.9313 -0.7099 15 1 7.9081 0.0336 -1.1203 16 6 8.5223 -1.9909 -0.8365 17 7 8.2074 -3.1657 -0.3363 18 14 10.1531 -1.7575 -1.7172 19 1 11.1895 -1.3424 -0.7381 20 1 10.5584 -3.0357 -2.3553 21 1 10.0076 -0.7087 -2.7585 22 6 6.5924 -1.5592 1.4436 23 6 6.2029 -2.9883 1.8270 24 6 5.3742 -1.8062 2.3359 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2138 2.3195 0.0014 29 1 1.3300 4.5076 0.0000 30 1 3.7858 4.6505 -0.0001 31 1 5.1450 2.6050 -0.0034 32 1 8.8218 -3.9111 -0.4250 33 1 7.4817 -1.1373 1.9116 34 1 5.7622 -3.6150 1.0517 35 1 6.8358 -3.5063 2.5475 36 1 5.4624 -1.5469 3.3909 37 1 4.3887 -1.6549 1.8952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344936619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:43 Heat of formation + Delta-G solvation = -68.148985 kcal Electronic energy + Delta-G solvation = -21467.234270 eV Core-core repulsion = 18176.253583 eV Total energy + Delta-G solvation = -3290.980687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35721 -38.98822 -37.29050 -36.15819 -34.69341 -32.58651 -31.38603 -30.10236 -27.86773 -27.23486 -24.21421 -22.94724 -22.00268 -21.16468 -20.55257 -19.13404 -18.16208 -17.13485 -16.51931 -16.04546 -15.79092 -15.50514 -14.98991 -14.72321 -14.52217 -14.18152 -13.82833 -13.48897 -12.93641 -12.66802 -12.32295 -12.16113 -11.72367 -11.36565 -11.21963 -11.13723 -11.13268 -10.97375 -10.88548 -10.34624 -10.21691 -9.74666 -9.51068 -9.24304 -9.00913 -8.94336 -8.56570 -8.36083 -8.21837 -6.09258 -4.16851 0.94947 1.42395 3.18054 3.28389 3.28822 3.34458 3.37653 3.69695 4.03774 4.39169 4.71509 4.85263 5.02619 5.09161 5.09654 5.17430 5.24283 5.31718 5.45100 5.54236 5.73803 5.94548 6.03329 6.19622 6.28392 6.28620 6.44580 6.50972 6.66221 6.73850 6.78296 7.08672 7.25889 7.35821 7.40250 7.49600 7.70452 7.93542 8.20250 8.75360 8.99274 9.47490 10.97558 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.005204 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.323963 B = 5379.074543 C = 6047.051861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.280 6.280 3 C 0.182 3.818 4 C -0.229 4.229 5 C -0.055 4.055 6 C -0.176 4.176 7 C -0.024 4.024 8 C -0.149 4.149 9 C 0.497 3.503 10 O -0.498 6.498 11 O -0.351 6.351 12 C 0.250 3.750 13 H 0.048 0.952 14 C -0.526 4.526 15 H 0.068 0.932 16 C 0.069 3.931 17 N -0.873 5.873 18 Si 0.906 3.094 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.229 4.229 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.148 0.852 32 H 0.263 0.737 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.068 10.756 1.919 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.191 6.191 3 C 0.134 3.866 4 C -0.247 4.247 5 C -0.074 4.074 6 C -0.194 4.194 7 C -0.042 4.042 8 C -0.151 4.151 9 C 0.341 3.659 10 O -0.388 6.388 11 O -0.267 6.267 12 C 0.198 3.802 13 H 0.066 0.934 14 C -0.564 4.564 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.509 5.509 18 Si 0.733 3.267 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.133 4.133 23 C -0.161 4.161 24 C -0.266 4.266 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.165 0.835 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.032 9.984 1.936 16.530 hybrid contribution 0.660 0.016 -0.314 0.731 sum -12.372 10.000 1.622 15.990 Atomic orbital electron populations 1.23138 0.79015 1.04216 1.00941 1.86414 1.20548 1.25458 1.86633 1.19089 0.90832 0.84956 0.91688 1.21142 1.00045 0.91990 1.11551 1.21097 0.94798 0.96859 0.94606 1.21035 0.93695 0.98617 1.06035 1.21481 1.01281 0.90139 0.91281 1.18863 0.89698 0.93398 1.13139 1.20655 0.83051 0.88244 0.73980 1.90781 1.73300 1.29401 1.45336 1.86517 1.16846 1.41165 1.82215 1.20182 0.90142 0.78480 0.91401 0.93420 1.20908 1.00939 0.97619 1.36922 0.91333 1.24872 0.98467 0.94796 0.95403 1.70053 1.36285 1.00789 1.43779 0.86375 0.83011 0.77604 0.79705 1.20494 1.21093 1.19704 1.22587 0.95590 0.99122 0.96009 1.22358 1.01199 0.91073 1.01474 1.23288 0.97802 1.07125 0.98383 0.92745 0.92728 0.88051 0.84987 0.85570 0.85277 0.83470 0.92694 0.89420 0.89359 0.90878 0.91179 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.28 -4.64 8.57 -40.50 -0.35 -4.99 16 3 C 0.18 2.90 6.70 -38.67 -0.26 2.64 16 4 C -0.23 -2.72 9.03 -39.48 -0.36 -3.08 16 5 C -0.06 -0.58 10.03 -39.53 -0.40 -0.98 16 6 C -0.18 -2.04 10.02 -39.64 -0.40 -2.44 16 7 C -0.02 -0.36 9.61 -39.18 -0.38 -0.73 16 8 C -0.15 -2.71 5.89 -104.86 -0.62 -3.32 16 9 C 0.50 11.26 7.11 34.46 0.24 11.50 16 10 O -0.50 -12.39 12.25 -26.60 -0.33 -12.71 16 11 O -0.35 -8.60 9.09 -40.62 -0.37 -8.97 16 12 C 0.25 6.78 2.25 -27.88 -0.06 6.72 16 13 H 0.05 1.44 6.92 -51.93 -0.36 1.08 16 14 C -0.53 -14.81 8.88 -34.44 -0.31 -15.11 16 15 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 16 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 17 N -0.87 -24.58 11.43 55.43 0.63 -23.95 16 18 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.11 -2.89 4.47 -90.62 -0.41 -3.30 16 23 C -0.12 -2.96 9.04 -26.70 -0.24 -3.20 16 24 C -0.23 -5.20 9.81 -26.69 -0.26 -5.46 16 25 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 26 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.13 1.18 6.30 -52.49 -0.33 0.85 16 29 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.15 2.18 7.61 -52.48 -0.40 1.78 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.09 2.27 8.11 -51.93 -0.42 1.85 16 34 H 0.09 2.25 8.05 -51.93 -0.42 1.84 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.09 2.27 5.36 -51.93 -0.28 1.99 16 LS Contribution 314.49 15.07 4.74 4.74 Total: -1.00 -32.08 314.49 -7.89 -39.97 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.66 Total: 3.53 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -2.54 Total: -13.75 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.63 Total: -23.95 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.04 Total: -26.67 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.08 -7.89 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344936619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.182 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds