Wall clock time and date at job start Mon Mar 30 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35638 * 116.99244 * 2 1 4 4 C 1.38702 * 120.15986 * 0.02562 * 3 2 1 5 5 C 1.38060 * 120.08999 * 180.02562 * 4 3 2 6 6 C 1.38557 * 120.40270 * 359.95400 * 5 4 3 7 7 C 1.37765 * 120.31024 * 359.97438 * 6 5 4 8 8 C 1.39768 * 119.90177 * 0.02655 * 7 6 5 9 9 C 1.47397 * 120.19768 * 179.97438 * 8 7 6 10 10 O 1.21508 * 119.99935 * 179.97438 * 9 8 7 11 11 O 1.34749 * 120.00301 * 359.97438 * 9 8 7 12 12 C 1.45201 * 117.00645 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46747 * 29.99610 * 12 11 9 14 14 C 1.50701 * 109.47352 * 149.99905 * 12 11 9 15 15 H 1.07995 * 119.99672 * 0.02562 * 14 12 11 16 16 C 1.37872 * 119.99566 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00432 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99854 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47387 * 89.99323 * 18 16 14 20 20 H 1.48502 * 109.47136 * 209.99960 * 18 16 14 21 21 H 1.48502 * 109.46972 * 329.99605 * 18 16 14 22 22 C 1.53001 * 109.46917 * 270.00174 * 12 11 9 23 23 C 1.53000 * 117.49959 * 128.74259 * 22 12 11 24 24 C 1.53007 * 117.49961 * 60.08622 * 22 12 11 25 25 H 1.08996 * 109.47290 * 299.99827 * 1 2 3 26 26 H 1.08993 * 109.47176 * 60.00300 * 1 2 3 27 27 H 1.09004 * 109.46854 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.96005 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.79445 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.84975 * 180.02562 * 6 5 4 31 31 H 1.08004 * 120.05205 * 179.74518 * 7 6 5 32 32 H 0.96998 * 120.00092 * 180.02562 * 17 16 14 33 33 H 1.08993 * 115.55088 * 274.41143 * 22 12 11 34 34 H 1.09002 * 117.49798 * 359.97438 * 23 22 12 35 35 H 1.08998 * 117.49899 * 145.01999 * 23 22 12 36 36 H 1.08998 * 117.49292 * 214.98153 * 24 22 12 37 37 H 1.09007 * 117.49631 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2924 2.3739 0.0005 5 6 1.9205 3.6033 0.0000 6 6 3.3037 3.6840 -0.0001 7 6 4.0671 2.5372 0.0008 8 6 3.4446 1.2858 0.0014 9 6 4.2550 0.0547 0.0018 10 8 3.7101 -1.0314 0.0027 11 8 5.6002 0.1334 0.0012 12 6 6.3341 -1.1195 0.0011 13 1 5.7494 -1.8829 -0.5123 14 6 7.6494 -0.9313 -0.7099 15 1 7.9081 0.0336 -1.1203 16 6 8.5223 -1.9909 -0.8365 17 7 8.2074 -3.1657 -0.3363 18 14 10.1531 -1.7575 -1.7172 19 1 11.1895 -1.3424 -0.7381 20 1 10.5584 -3.0357 -2.3553 21 1 10.0076 -0.7087 -2.7585 22 6 6.5924 -1.5592 1.4436 23 6 6.2029 -2.9883 1.8270 24 6 5.3742 -1.8062 2.3359 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2138 2.3195 0.0014 29 1 1.3300 4.5076 0.0000 30 1 3.7858 4.6505 -0.0001 31 1 5.1450 2.6050 -0.0034 32 1 8.8218 -3.9111 -0.4250 33 1 7.4817 -1.1373 1.9116 34 1 5.7622 -3.6150 1.0517 35 1 6.8358 -3.5063 2.5475 36 1 5.4624 -1.5469 3.3909 37 1 4.3887 -1.6549 1.8952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344936619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:43 Heat of formation + Delta-G solvation = -86.251201 kcal Electronic energy + Delta-G solvation = -21468.019241 eV Core-core repulsion = 18176.253583 eV Total energy + Delta-G solvation = -3291.765658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67631 -40.57356 -38.39792 -38.01870 -36.59498 -34.70709 -32.53574 -31.11579 -29.85749 -28.18551 -25.82451 -24.70569 -23.11071 -23.04703 -22.09646 -21.08901 -19.48487 -18.70788 -18.31067 -17.53351 -17.11203 -16.87138 -16.60858 -16.41873 -15.71146 -15.67444 -15.34657 -14.67829 -14.54398 -14.36562 -13.58827 -13.53057 -13.18380 -13.05844 -12.95059 -12.78507 -12.55300 -12.28994 -12.16803 -12.10276 -12.03642 -11.77404 -11.37024 -11.12990 -10.94104 -10.60800 -10.43327 -10.08561 -9.27712 -8.20813 -6.38315 -0.21167 0.41182 1.42234 1.44287 1.54841 1.73112 2.01714 2.32124 2.44442 2.81722 3.06207 3.22250 3.78768 3.88351 4.03423 4.09180 4.24217 4.28696 4.36902 4.38456 4.39723 4.45806 4.53237 4.70582 4.71653 4.78521 4.94057 5.09098 5.19673 5.25291 5.33140 5.38753 5.45855 5.48803 5.56903 5.78694 5.85717 6.15473 6.41278 6.65737 7.07412 7.32086 8.85881 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.005204 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.323963 B = 5379.074543 C = 6047.051861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.323 6.323 3 C 0.168 3.832 4 C -0.220 4.220 5 C -0.033 4.033 6 C -0.166 4.166 7 C -0.036 4.036 8 C -0.195 4.195 9 C 0.489 3.511 10 O -0.534 6.534 11 O -0.359 6.359 12 C 0.256 3.744 13 H 0.002 0.998 14 C -0.556 4.556 15 H 0.064 0.936 16 C 0.025 3.975 17 N -0.896 5.896 18 Si 0.977 3.023 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.130 4.130 23 C -0.120 4.120 24 C -0.202 4.202 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.168 0.832 29 H 0.177 0.823 30 H 0.165 0.835 31 H 0.136 0.864 32 H 0.267 0.733 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 13.561 2.299 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.121 3.879 4 C -0.238 4.238 5 C -0.051 4.051 6 C -0.184 4.184 7 C -0.054 4.054 8 C -0.197 4.197 9 C 0.336 3.664 10 O -0.426 6.426 11 O -0.276 6.276 12 C 0.203 3.797 13 H 0.020 0.980 14 C -0.593 4.593 15 H 0.082 0.918 16 C -0.177 4.177 17 N -0.532 5.532 18 Si 0.801 3.199 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.193 1.193 22 C -0.149 4.149 23 C -0.157 4.157 24 C -0.239 4.239 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.186 0.814 29 H 0.194 0.806 30 H 0.182 0.818 31 H 0.154 0.846 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.171 12.806 2.322 19.241 hybrid contribution 0.834 -0.782 -0.449 1.229 sum -13.337 12.023 1.873 18.054 Atomic orbital electron populations 1.23463 0.76222 1.05430 1.03037 1.86349 1.23678 1.26717 1.86795 1.19356 0.90230 0.86238 0.92103 1.21569 1.01595 0.90841 1.09839 1.21713 0.94546 0.98050 0.90756 1.21437 0.94393 0.98510 1.04069 1.21518 1.01251 0.90412 0.92228 1.18844 0.90596 0.92160 1.18057 1.21603 0.82253 0.89891 0.72675 1.90735 1.73407 1.31174 1.47297 1.86505 1.18473 1.39782 1.82836 1.19826 0.89384 0.78449 0.92063 0.98030 1.21171 1.01898 0.97966 1.38294 0.91782 1.25751 1.01957 0.94227 0.95793 1.70175 1.37470 1.01397 1.44144 0.85279 0.78285 0.77748 0.78623 1.19309 1.20371 1.19261 1.22412 0.96615 1.00237 0.95605 1.22277 1.01636 0.90564 1.01242 1.23244 0.96042 1.05182 0.99439 0.90446 0.90569 0.87572 0.81439 0.80580 0.81795 0.84604 0.92373 0.90003 0.91841 0.88969 0.87906 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -10.94 8.57 -68.59 -0.59 -11.52 16 3 C 0.17 5.31 6.70 22.86 0.15 5.46 16 4 C -0.22 -4.45 9.03 22.34 0.20 -4.24 16 5 C -0.03 -0.53 10.03 22.30 0.22 -0.30 16 6 C -0.17 -3.30 10.02 22.23 0.22 -3.08 16 7 C -0.04 -1.07 9.61 22.53 0.22 -0.86 16 8 C -0.19 -7.32 5.89 -20.02 -0.12 -7.44 16 9 C 0.49 23.77 7.11 70.23 0.50 24.27 16 10 O -0.53 -28.72 12.25 26.81 0.33 -28.39 16 11 O -0.36 -18.88 9.09 -56.59 -0.51 -19.40 16 12 C 0.26 14.78 2.25 29.85 0.07 14.85 16 13 H 0.00 0.13 6.92 -2.39 -0.02 0.11 16 14 C -0.56 -32.76 8.88 25.60 0.23 -32.53 16 15 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 16 C 0.02 1.39 5.30 84.65 0.45 1.84 16 17 N -0.90 -51.92 11.43 21.45 0.25 -51.68 16 18 Si 0.98 43.94 29.54 68.60 2.03 45.97 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C -0.13 -6.86 4.47 -10.79 -0.05 -6.91 16 23 C -0.12 -5.94 9.04 30.62 0.28 -5.67 16 24 C -0.20 -9.41 9.81 30.62 0.30 -9.11 16 25 H 0.08 1.12 7.66 -2.39 -0.02 1.10 16 26 H 0.08 1.12 7.66 -2.39 -0.02 1.10 16 27 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.17 2.13 6.30 -2.91 -0.02 2.11 16 29 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 30 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.14 4.21 7.61 -2.91 -0.02 4.19 16 32 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.08 4.38 8.11 -2.39 -0.02 4.36 16 34 H 0.06 3.44 8.05 -2.39 -0.02 3.42 16 35 H 0.09 4.15 8.14 -2.39 -0.02 4.13 16 36 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 37 H 0.08 4.04 5.36 -2.38 -0.01 4.02 16 Total: -1.00 -75.92 314.49 6.36 -69.56 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 1.08 Total: 17.83 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 3.78 Total: -22.36 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.25 Total: -51.68 kcal Atomic # 8 Polarization: -58.54 SS G_CDS: -0.77 Total: -59.32 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -75.92 6.36 -69.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344936619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.695 kcal (2) G-P(sol) polarization free energy of solvation -75.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds